mRNA_H-paniculata_contig3748.9864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3748.9864.1
Unique NamemRNA_H-paniculata_contig3748.9864.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3748.9864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3748contigH-paniculata_contig3748:10316..12805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3748.9864.1prot_H-paniculata_contig3748.9864.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3748 10316..12740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.7895663-CDS-H-paniculata_contig3748:10315..104021622930152.7895663-CDS-H-paniculata_contig3748:10315..10402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3748 10316..10402 -
1691481168.7159548-CDS-H-paniculata_contig3748:10315..104021691481168.7159548-CDS-H-paniculata_contig3748:10315..10402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3748 10316..10402 -
1622930152.8071642-CDS-H-paniculata_contig3748:12620..127401622930152.8071642-CDS-H-paniculata_contig3748:12620..12740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3748 12621..12740 -
1691481168.7265906-CDS-H-paniculata_contig3748:12620..127401691481168.7265906-CDS-H-paniculata_contig3748:12620..12740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3748 12621..12740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.827431-UTR-H-paniculata_contig3748:12740..128051622930152.827431-UTR-H-paniculata_contig3748:12740..12805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3748 12741..12805 -
1691481168.7339053-UTR-H-paniculata_contig3748:12740..128051691481168.7339053-UTR-H-paniculata_contig3748:12740..12805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3748 12741..12805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3748.9864.1

>prot_H-paniculata_contig3748.9864.1 ID=prot_H-paniculata_contig3748.9864.1|Name=mRNA_H-paniculata_contig3748.9864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MILCCVEYSKSRFSKNTPQKLPYLRSSFDILDGRRMGTNQEVQLLATRGG
SERMSCRSSPRGQLDNESK
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mRNA from alignment at H-paniculata_contig3748:10316..12805-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3748.9864.1 ID=mRNA_H-paniculata_contig3748.9864.1|Name=mRNA_H-paniculata_contig3748.9864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig3748:10316..12805- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTAGGCCCATAATTCCCCCCTACAACTGAAGAGACTATAGGAGGACGCT
TCTAGGGTTGCCCCGATGATTTTGTGCTGTGTAGAATATTCAAAGTCAAG
ATTTTCGAAAAATACTCCGCAGAAATTGCCGTATCTTCGTTCATCGTTCG
ATATCTTGGACGGCCGCCGTATGGGTACAAATCAGGTGAGTGTACAGTAC
AACAGCTGCAGCTTGCAGCTCTATTGAATATCATGCTGTCCAATTCTCAA
GTTGATCTTTGATATTTGATGATTAATTGTCTCAAGTCTGCACCCTTCGC
TCGCGTACTAACTTAATGCTCAGGATGGCAGACTGACATACTACATATAG
TGTAGCTCTGGAGGTGGAGCTACAAGGGTTTTGTGTTCGTTCTCAACGAC
GCTACACTTTTACTGTCAGATTATGCGTCGAAATTCCTGCTGCCGTAAGG
TAGACATGATTCATTGGTTTTCTCCAGGGCTGAAATAAGTTAGCTGCCAC
CTTGAATAGGATAAGGGGGGTTCATGTGGACTCAGTAAAGAAATAAGCCA
TTTTCCTTGTTAAGTTGGCATGCCCCTTGAAACGACCAAACAAGGGGAAT
TTCCAAGCAGCGACCACGCAGGCGTGCAACTGTTAGTGGGCCTGGGTGAG
CGCTACGCTGCGCCGAATCTCAAATCTCACAATCACGAGGCTCTACCTTC
GCATATATTTTGAAGACCATGGCTGGAGGGCGTATTTGAGCGGTCAAACG
TACGTGAGAACTGACCTTTGATCTTGTCGCACATGAACATTGTAGTGTAC
TGGAGTACCGCAGGAATGCTGTTTGTACTATTTAGAATCTGTCCAACAGC
TAACAATTCTATGACCTTGCTACGGCAGTAGAGTATGTTCCATCTCCTCG
CGCGTGCCTGTCTCTCTATCAGCAGCGGGCGCGCAATGGGAATAGCGAAT
AAATAGATACAGGGCATGGCGCGCGGTAGGGAGCCTGAAGCTGCTAACGC
AACTAGGTCATCTATTACCCTTTGCAACAACTCAGTAATTTAGGGCAGAC
ACAGGCTCTGCCAACACACACAACAAACTACAAGCACACAGGTAGGTGTA
CATATGCTCTGCCAATTCACACACATGTGATCTGTCAACCCAAATATGCG
GTCAGATGCGAGTTTTAGATACCAACGAGCACATGATCGCACTGCCAACA
GCAGCATCTTGGGAGCCTATGCCGGCCCCAACGACACGCGCGAAATGGGA
GCCCCTCAGCCTACCGTTTCGTATACAGTACAGTAAGCACCGAATAGTGT
GTTCGCCCATTGGGCGCCGGCGTCTGCAGTATCCCAATCTAACCCCTACC
TAACCCTCCACGTGGAAATATCATTGAAATGAGATGTCTATGACATGCTT
CTGGGGATAGAGAGTCGCCGCTGTTCAGACGGCGAGTCCGGTAAGACAGC
TGTAGTACATGCAGCATAGACAAAGTTGGCACGGTTCTGTAAACGACGGC
TACTTCGCTCGACCTTTAATGTCAGGGTTTTTGTTCGGAAACAGCCTCCA
CCCCCAGACGAATTGTAGTCAGTAGTCTATGGAAGATGTCCATCACACAA
TACAGAAGCATCCGACATGTATGTTCTTCTGCAAATAGATGAAACAGAAC
CCCCAAACCGGGAACTGAGAATCGCAGGGATGGCATCATGTACGCCCAGG
AAAAAAAAACGGGCCTTGTGGTCCACAAGGAAGGAATCCTCGATAAGGAG
GACATGGAATCATGGCCGCTGCTCAGACCCGACAAGTTGACCACTTTACC
GACTAATCTTCTGCGGGCTAGTGCTGCAGAGCTTGATACTATGTGCAGGC
AAATGTCCGAGGACTCAGGTGGGCTGAAATATAATGTGCAACAAACATGT
ACTTTGTCGGATCCAGACATACAATACTTGAAGGTTTACTGGCTATTGTA
ATAATCCTGTTTATCAGACGTTAACCGAACGGTGTTATTTTAATTTCTAT
AAATATAGAGATGAATGCCGTGAACACCATCCAGTGAACGTCTACTGTTT
GTCTATCCGGCCGGTAGTGTAAAACACTGAGCATTTTTCTATGGATATCA
CCTGCCTGTGTCAGGTTTATACCTGTCGTCGGTTGATGTACTGTTATCTA
GGTGTATACGGCAATACCTATGACCGTGAATGAACTTGTTAGTCAATTTT
CCTTATGCAATTGAAATAATGTGTGGTACCTCTAGTTTTTCTCGGCAAAA
AACACAGGATCGGCGTGTCTTCCGGACTACTGTAGCAGAGTGAGTGCAAG
TGTTCAATTATGTAAAGTCTGAATGACAGTAAGTGACCTTGCAACTGAAG
GTGAAGACAATAGGAAAACAAACACCCTCCTCTCTTCCTCCTCTATTGCC
CAGGAGGTGCAATTGCTGGCTACGCGAGGAGGCAGCGAGAGAATGTCTTG
TCGATCCTCACCGAGAGGGCAGCTCGACAACGAGTCCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3748:10316..12805-

>mRNA_H-paniculata_contig3748.9864.1 ID=mRNA_H-paniculata_contig3748.9864.1|Name=mRNA_H-paniculata_contig3748.9864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig3748:10316..12805- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTTGTGCTGTGTAGAATATTCAAAGTCAAGATTTTCGAAAAATAC
TCCGCAGAAATTGCCGTATCTTCGTTCATCGTTCGATATCTTGGACGGCC
GCCGTATGGGTACAAATCAGATGATTTTGTGCTGTGTAGAATATTCAAAG
TCAAGATTTTCGAAAAATACTCCGCAGAAATTGCCGTATCTTCGTTCATC
GTTCGATATCTTGGACGGCCGCCGTATGGGTACAAATCAGGAGGTGCAAT
TGCTGGCTACGCGAGGAGGCAGCGAGAGAATGTCTTGTCGATCCTCACCG
AGAGGGCAGCTCGACAACGAGTCCAAGGAGGTGCAATTGCTGGCTACGCG
AGGAGGCAGCGAGAGAATGTCTTGTCGATCCTCACCGAGAGGGCAGCTCG
ACAACGAGTCCAAG
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