mRNA_H-paniculata_contig3744.9858.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3744.9858.1
Unique NamemRNA_H-paniculata_contig3744.9858.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: A0A6H5KPJ7_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.470e-20
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 SGKAKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFKN 153
            SGK KGTI  SM+NIY+QEG+ AFWNGNGAN LKIMPESA+RFLGYEVFKN
Sbjct:   90 SGKTKGTIAKSMSNIYRQEGWLAFWNGNGANTLKIMPESAIRFLGYEVFKN 140          
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: D8LH95_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH95_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.000e-20
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    1 SGKAKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFKNA 156
            SGK KGTI  SM+NIY+QEG+ AFWNGNGAN LKIMPESA+RFLGYE+FKN+
Sbjct:  218 SGKTKGTIAKSMSNIYRQEGWLAFWNGNGANTLKIMPESAIRFLGYEIFKNS 269          
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: A0A835Z3Z5_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.460e-12
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 SGKAKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFK 150
            +G  +GTI+  +  I+ + G+RAFW GNGANV+KIMPESA+RF+GY+ FK
Sbjct:  499 AGTERGTIMGGLRGIWAEGGWRAFWRGNGANVIKIMPESAIRFMGYDFFK 548          
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: A0A0L0G9S6_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G9S6_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.730e-9
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 SGKAKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFKN 153
            +G  +G ++  + NIY   G+RAFW GNG N++KI PESA++F  YE  KN
Sbjct:  228 AGPMQGGVLQGLRNIYNDGGWRAFWRGNGMNIIKITPESAVKFYTYETVKN 278          
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: L8GVJ4_ACACA (Mitochondrial adp/atp carrier proteins (Iss), putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVJ4_ACACA)

HSP 1 Score: 56.6 bits (135), Expect = 5.150e-8
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    1 SGKAKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFK 150
            SG     ++ ++  I+ +EGFRA+W GNG NV++IMP  A RF  Y+ FK
Sbjct:   81 SGPRYQGVLPALRKIWAEEGFRAYWKGNGTNVIRIMPSDAARFYSYDTFK 130          
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: A0A2R5G3G9_9STRA (Calcium-binding mitochondrial carrier protein SCaMC-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3G9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.350e-8
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 SGKAKG-TIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFKN 153
            +G   G TI   + +IY++ GF AF+ GNG+NV+KI+PESAM+F  YE  KN
Sbjct:  126 TGNVSGRTITQGLRSIYKEGGFVAFYRGNGSNVVKIIPESAMKFFTYERLKN 177          
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: A0A7S2WI82_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WI82_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.410e-8
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    7 KAKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFK 150
            K K +I  ++ NIY+  G RAF+ GNG+NV+KIMPESA++F+ Y+  K
Sbjct:  216 KGKISIFQALKNIYRDGGVRAFFRGNGSNVIKIMPESAIKFVAYDQLK 263          
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: A0A0B7N5C0_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N5C0_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 5.470e-8
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   10 AKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFKN 153
            A+  ++  M NIY+Q GFRAF+ GNG NV+KI+PESA++F  +E  K+
Sbjct: 1657 AQSALLTGMKNIYRQGGFRAFFVGNGLNVIKIVPESAIKFYVFETAKS 1704          
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: A0A8H7SKQ8_9FUNG (Uncharacterized protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SKQ8_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 7.420e-8
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 SGKAKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFKN 153
            + K +  I+  + NIY Q GFRAF+ GNG NV+KI+PESA++F  +E  K+
Sbjct:  243 NSKPQSAILTGLKNIYHQGGFRAFFVGNGLNVIKIVPESAIKFYVFETTKS 293          
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Match: UPI000D62F0C9 (calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X2 n=2 Tax=Citrus TaxID=2706 RepID=UPI000D62F0C9)

HSP 1 Score: 55.8 bits (133), Expect = 1.010e-7
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   10 AKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFKNA 156
            A+  +V ++  I+++EGF  F+ GNG NVLK+ PESA++F  YE+ KNA
Sbjct:  255 AQARLVPTIRKIWKEEGFLGFFRGNGLNVLKVAPESAIKFHAYELLKNA 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3744.9858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPJ7_9PHAE1.470e-2082.35EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LH95_ECTSI3.000e-2078.85N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A835Z3Z5_9STRA2.460e-1258.00Mitochondrial carrier domain-containing protein n=... [more]
A0A0L0G9S6_9EUKA1.730e-949.02Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
L8GVJ4_ACACA5.150e-846.00Mitochondrial adp/atp carrier proteins (Iss), puta... [more]
A0A2R5G3G9_9STRA5.350e-851.92Calcium-binding mitochondrial carrier protein SCaM... [more]
A0A7S2WI82_9STRA5.410e-852.08Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A0B7N5C0_9FUNG5.470e-852.08Uncharacterized protein n=1 Tax=Parasitella parasi... [more]
A0A8H7SKQ8_9FUNG7.420e-849.02Uncharacterized protein n=1 Tax=Thamnidium elegans... [more]
UPI000D62F0C91.010e-748.98calcium-binding mitochondrial carrier protein SCaM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3744contigH-paniculata_contig3744:16403..16558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D8LH95
KEGG koko:K14684
KEGG TC2.A.29.23
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ATP transmembrane transporter activity
EggNOG OGsKOG0036@1,KOG0036@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.2495587-CDS-H-paniculata_contig3744:16402..165581622930152.2495587-CDS-H-paniculata_contig3744:16402..16558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3744 16403..16558 -
1691481168.468468-CDS-H-paniculata_contig3744:16402..165581691481168.468468-CDS-H-paniculata_contig3744:16402..16558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3744 16403..16558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3744.9858.1prot_H-paniculata_contig3744.9858.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3744 16403..16558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3744.9858.1

>prot_H-paniculata_contig3744.9858.1 ID=prot_H-paniculata_contig3744.9858.1|Name=mRNA_H-paniculata_contig3744.9858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
SGKAKGTIVVSMTNIYQQEGFRAFWNGNGANVLKIMPESAMRFLGYEVFK
NA
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mRNA from alignment at H-paniculata_contig3744:16403..16558-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3744.9858.1 ID=mRNA_H-paniculata_contig3744.9858.1|Name=mRNA_H-paniculata_contig3744.9858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig3744:16403..16558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGCAAGGCTAAGGGAACAATCGTGGTGAGCATGACGAACATCTACCA GCAGGAAGGATTTAGAGCGTTTTGGAACGGTAACGGCGCCAACGTGCTCA AGATCATGCCGGAGAGCGCCATGCGCTTCTTGGGGTACGAGGTCTTCAAA AACGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig3744:16403..16558-

>mRNA_H-paniculata_contig3744.9858.1 ID=mRNA_H-paniculata_contig3744.9858.1|Name=mRNA_H-paniculata_contig3744.9858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig3744:16403..16558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGCAAGGCTAAGGGAACAATCGTGGTGAGCATGACGAACATCTACCA
GCAGGAAGGATTTAGAGCGTTTTGGAACGGTAACGGCGCCAACGTGCTCA
AGATCATGCCGGAGAGCGCCATGCGCTTCTTGGGGTACGAGGTCTTCAAA
AACGCATCGGGCAAGGCTAAGGGAACAATCGTGGTGAGCATGACGAACAT
CTACCAGCAGGAAGGATTTAGAGCGTTTTGGAACGGTAACGGCGCCAACG
TGCTCAAGATCATGCCGGAGAGCGCCATGCGCTTCTTGGGGTACGAGGTC
TTCAAAAACGCA
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