mRNA_H-paniculata_contig3742.9852.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3742.9852.1
Unique NamemRNA_H-paniculata_contig3742.9852.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: A0A2S2NZC6_SCHGA (Uncharacterized protein ycf68 n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NZC6_SCHGA)

HSP 1 Score: 61.2 bits (147), Expect = 2.150e-10
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 RKMGVRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLESLSI 177
            RK G  S  H PY+LGYTRATM  TK CK  +     ++ L SDC LQ A +K ESL I
Sbjct:   13 RKAGTTSDHHAPYDLGYTRATMDGTKGCKTARSSQSHKTILSSDCRLQLAYMKPESLVI 71          
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: A8SSM3_9FIRM (Uncharacterized protein n=6 Tax=Eubacteriales TaxID=186802 RepID=A8SSM3_9FIRM)

HSP 1 Score: 60.5 bits (145), Expect = 4.420e-10
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 RKMGVRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLESLSI 177
            RK+G+ S  H PY+LGYTRATMA TK  K  K     +  L SDC LQ   +KLESL I
Sbjct:   13 RKVGMTSNHHAPYDLGYTRATMAVTKRSKPVKASKPQKGCLSSDCSLQLDYMKLESLVI 71          
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: A9LGX2_9BACT (Uncharacterized protein n=1 Tax=uncultured planctomycete 3FN TaxID=455066 RepID=A9LGX2_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 8.260e-10
Identity = 36/76 (47.37%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    1 RKMGVRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLESLSIIVYSGCRGEHVVGPCTH 228
            RK G  S  H  Y  G TRATM  TK  K  ++    ++ L SDC LQ A +KLESL I     C GE+V  PCTH
Sbjct:   14 RKAGTTSSHHGLYVQGCTRATMGRTKGSKLARVSKPQKASLSSDCRLQLAYMKLESLVIAGQLYC-GEYVPEPCTH 88          
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: A0A2S7V079_9GAMM (Uncharacterized protein n=1 Tax=Psychrosphaera saromensis TaxID=716813 RepID=A0A2S7V079_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 2.510e-9
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 RKMGVRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLESLSII 180
            RK+G  S  H PYE+GYTRATMASTK CK  ++    ++    D  LQ   +K ESL I+
Sbjct:   13 RKVGTTSSHHGPYEMGYTRATMASTKGCKLARVSGSHKACRSPDWSLQLDSMKSESLVIV 72          
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: D1YGT1_LACGS (Uncharacterized protein n=2 Tax=Lactobacillus TaxID=1578 RepID=D1YGT1_LACGS)

HSP 1 Score: 58.2 bits (139), Expect = 6.590e-9
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 RKMGVRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLESLSI 177
            RK+G+ S  H PY+LGYTRATM  T   +  K     ++ L SDC LQ A  KLESL I
Sbjct:   21 RKVGMTSSHHAPYDLGYTRATMDGTTRSEPAKASGSLKAVLSSDCRLQLAYTKLESLVI 79          
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: A0A2S7V0H2_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Psychrosphaera saromensis TaxID=716813 RepID=A0A2S7V0H2_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.090e-7
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1
Query:    1 RKMGVRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLE 165
            RK+G  S  H PYE+GYTRATMASTK CK  ++    ++    D  LQ   +K E
Sbjct:   14 RKVGTTSSHHGPYEMGYTRATMASTKGCKLARVSGSHKACRSPDWSLQLDSMKSE 68          
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: A0A231HGN8_9BURK (Uncharacterized protein n=5 Tax=Bacteria TaxID=2 RepID=A0A231HGN8_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 1.590e-7
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   13 VRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLESLSI 177
            + S  H PY+LGYTRATM  TK  +  +     ++ L SDC LQ A +KLESL I
Sbjct:    1 MTSNHHAPYDLGYTRATMDGTKGSETARFSQSHKTVLSSDCRLQLACMKLESLVI 55          
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: A0A0N1KF99_9BACI (Uncharacterized protein n=1 Tax=Geobacillus sp. BCO2 TaxID=1547578 RepID=A0A0N1KF99_9BACI)

HSP 1 Score: 52.4 bits (124), Expect = 4.510e-7
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   13 VRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLESLSI 177
            + S  H PY+LGYTRATM  TK C+  +     ++ L SDC LQ A +K ESL I
Sbjct:    1 MTSNHHAPYDLGYTRATMGGTKGCEPARGSESQKAALSSDCRLQLACMKPESLVI 55          
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: A0A4Y7RH53_9FIRM (Uncharacterized protein n=4 Tax=Pelotomaculum TaxID=191373 RepID=A0A4Y7RH53_9FIRM)

HSP 1 Score: 52.0 bits (123), Expect = 6.380e-7
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   13 VRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLESLSI 177
            + S  H PY LGYTRATMA TK  +  +     ++ L SDC LQFA +K ESL I
Sbjct:    1 MTSNHHAPYVLGYTRATMAGTKGSEAARRSKSQKAGLSSDCRLQFACMKSESLVI 55          
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Match: A0A143Z1R9_9LACT (Uncharacterized protein n=9 Tax=Bacilli TaxID=91061 RepID=A0A143Z1R9_9LACT)

HSP 1 Score: 51.6 bits (122), Expect = 9.030e-7
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1
Query:   13 VRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARIKLESLSI 177
            + S  H PY+LGYTRATM  T + K  +     ++ L SDC LQ A +K ESL I
Sbjct:    1 MTSNHHAPYDLGYTRATMDGTTSSKTARSSESLKAILSSDCRLQLAYMKPESLVI 55          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3742.9852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2S2NZC6_SCHGA2.150e-1052.54Uncharacterized protein ycf68 n=1 Tax=Schizaphis g... [more]
A8SSM3_9FIRM4.420e-1054.24Uncharacterized protein n=6 Tax=Eubacteriales TaxI... [more]
A9LGX2_9BACT8.260e-1047.37Uncharacterized protein n=1 Tax=uncultured plancto... [more]
A0A2S7V079_9GAMM2.510e-948.33Uncharacterized protein n=1 Tax=Psychrosphaera sar... [more]
D1YGT1_LACGS6.590e-950.85Uncharacterized protein n=2 Tax=Lactobacillus TaxI... [more]
A0A2S7V0H2_9GAMM1.090e-747.27Uncharacterized protein (Fragment) n=1 Tax=Psychro... [more]
A0A231HGN8_9BURK1.590e-749.09Uncharacterized protein n=5 Tax=Bacteria TaxID=2 R... [more]
A0A0N1KF99_9BACI4.510e-749.09Uncharacterized protein n=1 Tax=Geobacillus sp. BC... [more]
A0A4Y7RH53_9FIRM6.380e-750.91Uncharacterized protein n=4 Tax=Pelotomaculum TaxI... [more]
A0A143Z1R9_9LACT9.030e-747.27Uncharacterized protein n=9 Tax=Bacilli TaxID=9106... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3742contigH-paniculata_contig3742:267..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.0
Seed ortholog evalue4.6e-09
Seed eggNOG ortholog1124780.ANNU01000014_gene3895
Hectar predicted targeting categoryother localisation
EggNOG OGs2DMHR@1,32RMI@2,47W50@768503,4NUR9@976
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.7908728-CDS-H-paniculata_contig3742:266..5091622930151.7908728-CDS-H-paniculata_contig3742:266..509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3742 267..509 -
1691481168.2936647-CDS-H-paniculata_contig3742:266..5091691481168.2936647-CDS-H-paniculata_contig3742:266..509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3742 267..509 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.8067613-UTR-H-paniculata_contig3742:509..5151622930151.8067613-UTR-H-paniculata_contig3742:509..515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3742 510..515 -
1691481168.3042805-UTR-H-paniculata_contig3742:509..5151691481168.3042805-UTR-H-paniculata_contig3742:509..515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3742 510..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3742.9852.1prot_H-paniculata_contig3742.9852.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3742 267..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3742.9852.1

>prot_H-paniculata_contig3742.9852.1 ID=prot_H-paniculata_contig3742.9852.1|Name=mRNA_H-paniculata_contig3742.9852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MGVRSGFHDPYELGYTRATMASTKTCKREKLKPIFESFLGSDCGLQFARI
KLESLSIIVYSGCRGEHVVGPCTHTTPPVTS
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mRNA from alignment at H-paniculata_contig3742:267..515-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3742.9852.1 ID=mRNA_H-paniculata_contig3742.9852.1|Name=mRNA_H-paniculata_contig3742.9852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig3742:267..515- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAGATGGGGGTGAGGTCAGGTTTTCATGACCCTTATGAACTGGGCTA CACACGTGCTACAATGGCAAGTACAAAAACGTGCAAGCGTGAGAAGCTTA AGCCAATCTTTGAATCTTTTCTCGGTTCGGATTGCGGGCTGCAGTTCGCC CGCATAAAGTTGGAATCACTCAGTATAATCGTGTATTCAGGATGCCGCGG TGAACATGTCGTTGGGCCTTGCACACACACCACACCGCCCGTCACATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3742:267..515-

>mRNA_H-paniculata_contig3742.9852.1 ID=mRNA_H-paniculata_contig3742.9852.1|Name=mRNA_H-paniculata_contig3742.9852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig3742:267..515- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGTGAGGTCAGGTTTTCATGACCCTTATGAACTGGGCTACACACG
TGCTACAATGGCAAGTACAAAAACGTGCAAGCGTGAGAAGCTTAAGCCAA
TCTTTGAATCTTTTCTCGGTTCGGATTGCGGGCTGCAGTTCGCCCGCATA
AAGTTGGAATCACTCAGTATAATCGTGTATTCAGGATGCCGCGGTGAACA
TGTCGTTGGGCCTTGCACACACACCACACCGCCCGTCACATCCATGGGGG
TGAGGTCAGGTTTTCATGACCCTTATGAACTGGGCTACACACGTGCTACA
ATGGCAAGTACAAAAACGTGCAAGCGTGAGAAGCTTAAGCCAATCTTTGA
ATCTTTTCTCGGTTCGGATTGCGGGCTGCAGTTCGCCCGCATAAAGTTGG
AATCACTCAGTATAATCGTGTATTCAGGATGCCGCGGTGAACATGTCGTT
GGGCCTTGCACACACACCACACCGCCCGTCACATCC
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