mRNA_H-paniculata_contig3717.9804.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3717.9804.1
Unique NamemRNA_H-paniculata_contig3717.9804.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3717.9804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3717contigH-paniculata_contig3717:12183..13048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size866
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3717.9804.1prot_H-paniculata_contig3717.9804.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3717 12234..12782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.6329048-UTR-H-paniculata_contig3717:12182..122331622930146.6329048-UTR-H-paniculata_contig3717:12182..12233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3717 12183..12233 +
1691481165.9769423-UTR-H-paniculata_contig3717:12182..122331691481165.9769423-UTR-H-paniculata_contig3717:12182..12233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3717 12183..12233 +
1622930146.6701467-UTR-H-paniculata_contig3717:12782..130481622930146.6701467-UTR-H-paniculata_contig3717:12782..13048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3717 12783..13048 +
1691481165.9943712-UTR-H-paniculata_contig3717:12782..130481691481165.9943712-UTR-H-paniculata_contig3717:12782..13048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3717 12783..13048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.6485796-CDS-H-paniculata_contig3717:12233..127821622930146.6485796-CDS-H-paniculata_contig3717:12233..12782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3717 12234..12782 +
1691481165.9860258-CDS-H-paniculata_contig3717:12233..127821691481165.9860258-CDS-H-paniculata_contig3717:12233..12782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3717 12234..12782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3717.9804.1

>prot_H-paniculata_contig3717.9804.1 ID=prot_H-paniculata_contig3717.9804.1|Name=mRNA_H-paniculata_contig3717.9804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MKCSIHNTRARVVEMGLVSYVAGGRLLAVEYGRPETVTRNHDRGAGGCGE
GCCVVASRGCWKSLVGLHDHSRGAEVAVKAKTASSAPLLSGIPGPTNEPR
TPLRRKIHNIISRRPKLRSGKSPVRRLWLALVDISGCPPVSKSHHVFIST
WMEGNSLSYYRLSPQEIIKSKLEQKGKAVSWS*
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mRNA from alignment at H-paniculata_contig3717:12183..13048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3717.9804.1 ID=mRNA_H-paniculata_contig3717.9804.1|Name=mRNA_H-paniculata_contig3717.9804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=866bp|location=Sequence derived from alignment at H-paniculata_contig3717:12183..13048+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCGGTCGGGTTGATCCTGGCAAGCACGGTCCCCATTTTTCGTTTTCGT
GATGAAATGTTCGATACATAATACAAGAGCGCGTGTTGTGGAGATGGGCC
TTGTGAGTTATGTGGCGGGTGGGCGCTTGCTGGCGGTCGAGTATGGTCGA
CCGGAGACTGTGACAAGGAATCACGACCGTGGAGCAGGGGGCTGCGGTGA
AGGGTGTTGCGTGGTTGCCTCTCGAGGTTGTTGGAAGTCGTTGGTCGGTC
TACATGATCATTCGAGGGGTGCAGAGGTAGCGGTGAAAGCAAAAACCGCC
AGCTCTGCACCACTCTTGTCCGGTATTCCGGGACCGACAAACGAACCTCG
AACACCGTTGAGAAGGAAGATACACAACATAATTAGCCGCCGCCCTAAGC
TCCGCAGTGGCAAAAGTCCTGTCCGCAGACTCTGGTTGGCTTTAGTTGAC
ATTAGTGGATGCCCACCCGTCTCAAAATCTCATCATGTATTCATATCCAC
GTGGATGGAGGGTAATAGTCTTTCCTATTACCGGCTCTCGCCACAGGAAA
TAATCAAATCTAAACTAGAACAGAAAGGCAAGGCCGTATCCTGGTCCTGA
CGACGTGTAGGGTTGACGGAATATGTTGTTGTGTCTGTGTCACTGGTAAA
AACGAATGAGACTTTAATTTCGGGCATTTAGAAACGTTTTTCAAGGCGTA
GTAATGTGTTTTTTTTTGCCAAGAATCAGACGGGTAATGGGCCGCTTTTT
GTGTGTTTTCAAAGAGTAGTATTGGAGTCGGAGGATGGCATTAATGAAAA
CTCACCTCACAGAGCGGCAATGAAAGCAGAGTCTTTTGCGTAACGACCAC
TATGTCTGGCGTGTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig3717:12183..13048+

>mRNA_H-paniculata_contig3717.9804.1 ID=mRNA_H-paniculata_contig3717.9804.1|Name=mRNA_H-paniculata_contig3717.9804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig3717:12183..13048+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATGTTCGATACATAATACAAGAGCGCGTGTTGTGGAGATGGGCCT
TGTGAGTTATGTGGCGGGTGGGCGCTTGCTGGCGGTCGAGTATGGTCGAC
CGGAGACTGTGACAAGGAATCACGACCGTGGAGCAGGGGGCTGCGGTGAA
GGGTGTTGCGTGGTTGCCTCTCGAGGTTGTTGGAAGTCGTTGGTCGGTCT
ACATGATCATTCGAGGGGTGCAGAGGTAGCGGTGAAAGCAAAAACCGCCA
GCTCTGCACCACTCTTGTCCGGTATTCCGGGACCGACAAACGAACCTCGA
ACACCGTTGAGAAGGAAGATACACAACATAATTAGCCGCCGCCCTAAGCT
CCGCAGTGGCAAAAGTCCTGTCCGCAGACTCTGGTTGGCTTTAGTTGACA
TTAGTGGATGCCCACCCGTCTCAAAATCTCATCATGTATTCATATCCACG
TGGATGGAGGGTAATAGTCTTTCCTATTACCGGCTCTCGCCACAGGAAAT
AATCAAATCTAAACTAGAACAGAAAGGCAAGGCCGTATCCTGGTCCTGAA
TGAAATGTTCGATACATAATACAAGAGCGCGTGTTGTGGAGATGGGCCTT
GTGAGTTATGTGGCGGGTGGGCGCTTGCTGGCGGTCGAGTATGGTCGACC
GGAGACTGTGACAAGGAATCACGACCGTGGAGCAGGGGGCTGCGGTGAAG
GGTGTTGCGTGGTTGCCTCTCGAGGTTGTTGGAAGTCGTTGGTCGGTCTA
CATGATCATTCGAGGGGTGCAGAGGTAGCGGTGAAAGCAAAAACCGCCAG
CTCTGCACCACTCTTGTCCGGTATTCCGGGACCGACAAACGAACCTCGAA
CACCGTTGAGAAGGAAGATACACAACATAATTAGCCGCCGCCCTAAGCTC
CGCAGTGGCAAAAGTCCTGTCCGCAGACTCTGGTTGGCTTTAGTTGACAT
TAGTGGATGCCCACCCGTCTCAAAATCTCATCATGTATTCATATCCACGT
GGATGGAGGGTAATAGTCTTTCCTATTACCGGCTCTCGCCACAGGAAATA
ATCAAATCTAAACTAGAACAGAAAGGCAAGGCCGTATCCTGGTCCTGA
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