mRNA_H-paniculata_contig3717.9803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3717.9803.1
Unique NamemRNA_H-paniculata_contig3717.9803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: A0A8K0F0F9_BRALA (Hypp5001 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0F0F9_BRALA)

HSP 1 Score: 75.1 bits (183), Expect = 5.060e-13
Identity = 38/128 (29.69%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   13 LRLDTKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDV 396
            + L TKI+ ++A+   ++ YG   W+   ++   L  +H+  L R L +      TN  +     LE+TG  S+E  +   R R++G+++R+  E LP+ ++    + G R RGRP R W   V++D+
Sbjct:  473 IHLSTKIKIYEAAIFTILTYGSEVWVTTKAQSHRLEAFHQRCLRRILRVRWFHRVTNQSV-----LEQTGTTSVEAVVAANRIRWLGHMIRMPKERLPRFLLDWNPNHGKRSRGRPRRTWLDSVLDDI 595          
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: UPI000C052046 (uncharacterized protein LOC111340234 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C052046)

HSP 1 Score: 73.9 bits (180), Expect = 6.660e-13
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   25 TKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDVNDFS 408
            TKIR FK++ L  +LYG  +W + ++   +L  +    L   L IY  +  +N+ L       RTG E I+  +++RR+R++G+VLR+   +LP+V +    DG  R RGRP   W   V  ++ + S
Sbjct:  158 TKIRFFKSNVLSTLLYGAESWKMTETISHKLEVFQNSCLRNILRIYWPQTISNYELR-----RRTGTELIKQQVQRRRWRWIGHVLRMPSAALPRVALRWTPDG-RRKRGRPRETWRRTVEKEMKENS 279          
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: A0A6P4YQR2_BRABE (uncharacterized protein LOC109471784 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YQR2_BRABE)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-11
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   13 LRLDTKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDVNDFSIS 414
            + L TK+R F+++   V+LYGC TW L  +   +L+ +    L   L I+  R  +N  L     LE  G E +EMT+++R++R++G+ LR   ES+ +  +  +  G  R RGRP   W   V  D+   + S
Sbjct:  150 ISLKTKLRIFESN---VLLYGCETWGLTQANIKKLQTFINARLRYILGIWWPRKVSNQDL-----LEIAGQERVEMTIRRRKWRWIGHTLRKPPESITRTALDWDPQG-RRKRGRPRLSWKRGVRKDLTAANTS 274          
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: UPI00200FE13E (uncharacterized protein LOC125233589 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200FE13E)

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-11
Identity = 41/134 (30.60%), Postives = 66/134 (49.25%), Query Frame = 1
Query:   10 KLRLDTKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDVNDFSI 411
            KL+L TKI  +K+  L ++LY   TW     +   L  +H   L   L +  +   TN  +     L+  G  SI  T+K+RR R++G+VLR+  + LP+ ++  E+    R  GRP  ++      D+  F I
Sbjct:   57 KLKLSTKILVYKSCVLSILLYASETWTTYSRQERRLNAFHMRCLRTILGVTWRDHITNERV-----LDLAGCYSITATLKQRRLRWLGHVLRMDPDRLPRAVMLSEIAYAKRPIGRPLLRFKDSCKRDMLSFGI 185          
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: A0A8B8B7A7_CRAVI (uncharacterized protein LOC111107908 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8B7A7_CRAVI)

HSP 1 Score: 68.9 bits (167), Expect = 3.000e-11
Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = 1
Query:   25 TKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDVNDFSISI 417
            TKI  + ++   V+LYG   W ++ S   +L  +    L R   I+      N  L     L R    SI   +KKRRFR++G+VLR+ +E LPKV +      G R  GRP   W   V+ ++ D   S+
Sbjct:   66 TKIHIYNSNVKSVLLYGSECWRIIQSDLQKLEVFQNNCLRRIQGIFWPEKIRNEDL-----LRRCNCHSIAEELKKRRFRWLGHVLRMTNERLPKVAL-RWTPPGKRKPGRPRTTWRRTVLAELQDLGYSL 190          
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: A0A5C6NA10_9TELE (Sodium/hydrogen exchanger 9B2 n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6NA10_9TELE)

HSP 1 Score: 69.3 bits (168), Expect = 3.960e-11
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   13 LRLDTKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDV 396
            ++L+TKI+ +KA  L  +LYGC TW        +L  +H   L   + I  +   TN  +     L+R G  SIE  + K + R+ G+++R+    LP+ +    L  G R  GRP +++  C+ + +
Sbjct:   78 IKLETKIKVYKAVVLTSLLYGCETWTTYRKYIKQLERFHMRSLRSIMHIKWQDRVTNLAV-----LDRAGLVSIETMIMKAQLRWSGHLIRMDSTRLPRQVFYGVLSQGQRNTGRPKKRYKDCIKDSL 200          
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: A0A5C6MDZ3_9TELE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6MDZ3_9TELE)

HSP 1 Score: 69.3 bits (168), Expect = 4.370e-11
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   13 LRLDTKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDV 396
            ++L+TKI+ +KA  L  +LYGC TW        +L  +H   L   + I  +   TN  +     L+R G  SIE  + K + R+ G+++R+    LP+ +    L  G R  GRP +++  C+ + +
Sbjct:  188 IKLETKIKVYKAVVLTSLLYGCETWTTYRKYIKQLERFHMRSLRSIMHIKWQDRVTNLAV-----LDRAGLVSIETMIMKAQLRWSGHLIRMDSTRLPRQVFYGVLSQGQRNTGRPKKRYKDCIKDSL 310          
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: A0A5C6MND2_9TELE (Uncharacterized protein n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6MND2_9TELE)

HSP 1 Score: 69.3 bits (168), Expect = 4.570e-11
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   13 LRLDTKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDV 396
            ++L+TKI+ +KA  L  +LYGC TW        +L  +H   L   + I  +   TN  +     L+R G  SIE  + K + R+ G+++R+    LP+ +    L  G R  GRP +++  C+ + +
Sbjct:  198 IKLETKIKVYKAVVLTSLLYGCETWTTYRKYIKQLERFHMRSLRSIMHIKWQDRVTNLAV-----LDRAGLVSIETMIMKAQLRWSGHLIRMDSTRLPRQVFYGVLSQGQRNTGRPKKRYKDCIKDSL 320          
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: A0A5C6MDP9_9TELE (Galectin n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6MDP9_9TELE)

HSP 1 Score: 69.3 bits (168), Expect = 4.590e-11
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   13 LRLDTKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDV 396
            ++L+TKI+ +KA  L  +LYGC TW        +L  +H   L   + I  +   TN  +     L+R G  SIE  + K + R+ G+++R+    LP+ +    L  G R  GRP +++  C+ + +
Sbjct:  102 IKLETKIKVYKAVVLTSLLYGCETWTTYRKYIKQLERFHMRSLRSIMHIKWQDRVTNLAV-----LDRAGLVSIETMIMKAQLRWSGHLIRMDSTRLPRQVFYGVLSQGQRNTGRPKKRYKDCIKDSL 224          
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Match: A0A5C6NV23_9TELE (Uncharacterized protein n=2 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6NV23_9TELE)

HSP 1 Score: 69.3 bits (168), Expect = 5.140e-11
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   13 LRLDTKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRCLSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDESLPKVMISEELDGGTRGRGRPARQWPYCVVNDV 396
            ++L+TKI+ +KA  L  +LYGC TW        +L  +H   L   + I  +   TN  +     L+R G  SIE  + K + R+ G+++R+    LP+ +    L  G R  GRP +++  C+ + +
Sbjct:  364 IKLETKIKVYKAVVLTSLLYGCETWTTYRKYIKQLERFHMRSLRSIMHIKWQDRVTNLAV-----LDRAGLVSIETMIMKAQLRWSGHLIRMDSTRLPRQVFYGVLSQGQRNTGRPKKRYKDCIKDSL 486          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3717.9803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K0F0F9_BRALA5.060e-1329.69Hypp5001 protein n=1 Tax=Branchiostoma lanceolatum... [more]
UPI000C0520466.660e-1333.59uncharacterized protein LOC111340234 n=1 Tax=Stylo... [more]
A0A6P4YQR2_BRABE1.130e-1132.84uncharacterized protein LOC109471784 n=1 Tax=Branc... [more]
UPI00200FE13E2.300e-1130.60uncharacterized protein LOC125233589 n=1 Tax=Legum... [more]
A0A8B8B7A7_CRAVI3.000e-1132.82uncharacterized protein LOC111107908 n=1 Tax=Crass... [more]
A0A5C6NA10_9TELE3.960e-1129.69Sodium/hydrogen exchanger 9B2 n=1 Tax=Takifugu fla... [more]
A0A5C6MDZ3_9TELE4.370e-1129.69Reverse transcriptase domain-containing protein (F... [more]
A0A5C6MND2_9TELE4.570e-1129.69Uncharacterized protein n=1 Tax=Takifugu flavidus ... [more]
A0A5C6MDP9_9TELE4.590e-1129.69Galectin n=1 Tax=Takifugu flavidus TaxID=433684 Re... [more]
A0A5C6NV23_9TELE5.140e-1129.69Uncharacterized protein n=2 Tax=Takifugu flavidus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3717contigH-paniculata_contig3717:3560..3985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.9
Seed ortholog evalue6.6e-11
Seed eggNOG ortholog6500.XP_005092035.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs39TZY@33154,3BI15@33208,3D94V@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.7468364-CDS-H-paniculata_contig3717:3559..39851622930146.7468364-CDS-H-paniculata_contig3717:3559..3985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3717 3560..3985 -
1691481166.003771-CDS-H-paniculata_contig3717:3559..39851691481166.003771-CDS-H-paniculata_contig3717:3559..3985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3717 3560..3985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3717.9803.1prot_H-paniculata_contig3717.9803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3717 3560..3985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3717.9803.1

>prot_H-paniculata_contig3717.9803.1 ID=prot_H-paniculata_contig3717.9803.1|Name=mRNA_H-paniculata_contig3717.9803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
DCPKLRLDTKIRTFKASALDVVLYGCFTWMLLDSRYAELRDYHRELLLRC
LSIYNKRGPTNHGLSYRVALERTGYESIEMTMKKRRFRFVGNVLRVGDES
LPKVMISEELDGGTRGRGRPARQWPYCVVNDVNDFSISITM*
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mRNA from alignment at H-paniculata_contig3717:3560..3985-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3717.9803.1 ID=mRNA_H-paniculata_contig3717.9803.1|Name=mRNA_H-paniculata_contig3717.9803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig3717:3560..3985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTGTCCGAAATTACGACTTGACACCAAGATTCGCACATTCAAGGCAAG CGCACTCGATGTCGTGCTGTATGGCTGCTTCACGTGGATGCTCCTCGACT CGCGCTATGCTGAGTTGAGGGACTACCATCGTGAACTCCTGCTGCGATGC CTCAGCATCTACAATAAGAGGGGACCTACAAATCACGGTCTGTCCTACCG AGTCGCCCTAGAGAGAACTGGGTACGAGAGCATCGAGATGACCATGAAGA AGCGACGATTTCGGTTCGTGGGGAACGTATTACGCGTGGGGGACGAGAGT CTGCCGAAGGTCATGATAAGCGAGGAACTTGACGGAGGAACAAGGGGCAG AGGCCGGCCTGCGAGGCAATGGCCATACTGTGTCGTCAACGACGTCAACG ACTTTAGCATCTCCATCACAATGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3717:3560..3985-

>mRNA_H-paniculata_contig3717.9803.1 ID=mRNA_H-paniculata_contig3717.9803.1|Name=mRNA_H-paniculata_contig3717.9803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig3717:3560..3985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTGTCCGAAATTACGACTTGACACCAAGATTCGCACATTCAAGGCAAG
CGCACTCGATGTCGTGCTGTATGGCTGCTTCACGTGGATGCTCCTCGACT
CGCGCTATGCTGAGTTGAGGGACTACCATCGTGAACTCCTGCTGCGATGC
CTCAGCATCTACAATAAGAGGGGACCTACAAATCACGGTCTGTCCTACCG
AGTCGCCCTAGAGAGAACTGGGTACGAGAGCATCGAGATGACCATGAAGA
AGCGACGATTTCGGTTCGTGGGGAACGTATTACGCGTGGGGGACGAGAGT
CTGCCGAAGGTCATGATAAGCGAGGAACTTGACGGAGGAACAAGGGGCAG
AGGCCGGCCTGCGAGGCAATGGCCATACTGTGTCGTCAACGACGTCAACG
ACTTTAGCATCTCCATCACAATGTAGGACTGTCCGAAATTACGACTTGAC
ACCAAGATTCGCACATTCAAGGCAAGCGCACTCGATGTCGTGCTGTATGG
CTGCTTCACGTGGATGCTCCTCGACTCGCGCTATGCTGAGTTGAGGGACT
ACCATCGTGAACTCCTGCTGCGATGCCTCAGCATCTACAATAAGAGGGGA
CCTACAAATCACGGTCTGTCCTACCGAGTCGCCCTAGAGAGAACTGGGTA
CGAGAGCATCGAGATGACCATGAAGAAGCGACGATTTCGGTTCGTGGGGA
ACGTATTACGCGTGGGGGACGAGAGTCTGCCGAAGGTCATGATAAGCGAG
GAACTTGACGGAGGAACAAGGGGCAGAGGCCGGCCTGCGAGGCAATGGCC
ATACTGTGTCGTCAACGACGTCAACGACTTTAGCATCTCCATCACAATGT
AG
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