mRNA_H-paniculata_contig3715.9796.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3715.9796.1
Unique NamemRNA_H-paniculata_contig3715.9796.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3715.9796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3715contigH-paniculata_contig3715:3535..6501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2183
Cds size1506
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3715.9796.1prot_H-paniculata_contig3715.9796.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3715 3664..5856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.6747718-UTR-H-paniculata_contig3715:3534..36631622930145.6747718-UTR-H-paniculata_contig3715:3534..3663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3715 3535..3663 -
1691481165.5712605-UTR-H-paniculata_contig3715:3534..36631691481165.5712605-UTR-H-paniculata_contig3715:3534..3663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3715 3535..3663 -
1622930145.7198226-UTR-H-paniculata_contig3715:5856..62621622930145.7198226-UTR-H-paniculata_contig3715:5856..6262Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3715 5857..6262 -
1691481165.6030977-UTR-H-paniculata_contig3715:5856..62621691481165.6030977-UTR-H-paniculata_contig3715:5856..6262Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3715 5857..6262 -
1622930145.732056-UTR-H-paniculata_contig3715:6359..65011622930145.732056-UTR-H-paniculata_contig3715:6359..6501Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3715 6360..6501 -
1691481165.6114633-UTR-H-paniculata_contig3715:6359..65011691481165.6114633-UTR-H-paniculata_contig3715:6359..6501Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3715 6360..6501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.689425-CDS-H-paniculata_contig3715:3663..40221622930145.689425-CDS-H-paniculata_contig3715:3663..4022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3715 3664..4022 -
1691481165.584223-CDS-H-paniculata_contig3715:3663..40221691481165.584223-CDS-H-paniculata_contig3715:3663..4022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3715 3664..4022 -
1622930145.7073689-CDS-H-paniculata_contig3715:4709..58561622930145.7073689-CDS-H-paniculata_contig3715:4709..5856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3715 4710..5856 -
1691481165.592576-CDS-H-paniculata_contig3715:4709..58561691481165.592576-CDS-H-paniculata_contig3715:4709..5856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3715 4710..5856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3715.9796.1

>prot_H-paniculata_contig3715.9796.1 ID=prot_H-paniculata_contig3715.9796.1|Name=mRNA_H-paniculata_contig3715.9796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=502bp
MSSLSPRQPCTDDAPPLQETRSQSYAPKAESAATEALSQLPVSKEQRTAA
VAAASQAATAWPAIAKGLLSTSSSTCYSSSSLSTSSSSSIPRPHADEVPS
VEEAHSRSYVPKAASSATKALLARPVPKEKLAAVVAPAPQVATTASEIVR
GRIPRRSGRARTPSPSPQLPTLSAGNQPTYQQPRSKMKRKQSSSENPKNT
DTVPPKAKKKPPSTSRRPPGKPRSKSAAAAMTATAKAMAPTASTEPTAPA
AVSAIAATAALETGVLEKGKGPCSRGNTSASGGVAEAFRSSEGNGLSILR
RAMDNEQPQETPLTSKRKPRAKPPSSSRRGPRKRILAAANIPVPPLPTPS
PQLPAAAEMTAACGAERSVGETIVSCGASTHGASVAHGVPMYSEDASSRP
LAHPNTAMSFTRESHEMGNALMGHPTGMGYDTMGTELIDRGAFVADVHAS
EGTYGVNDHPGEPRTVWGGDLHQSGHDAPRRHPAACPTPSNGGDTRYQRS
I*
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mRNA from alignment at H-paniculata_contig3715:3535..6501-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3715.9796.1 ID=mRNA_H-paniculata_contig3715.9796.1|Name=mRNA_H-paniculata_contig3715.9796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2967bp|location=Sequence derived from alignment at H-paniculata_contig3715:3535..6501- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTTCCTGTTGGTAGTGTTGGTGCTGGTTCTGATGCTGCTCCTCTTTC
TGGTAGTACTGGTGCTGGTTCTGATGCTCCTCTTTCTGCCGGTAGTACTG
GTGCTGGTGCTGGTTCTGATGCTGCTCCTCTTTCTGCCGGTAGTACTGGT
GCTGGTGCTGGTTCTGATGCTGCTTCTCTTTCTGCCGTTAGTACTGGTGC
TGGTGCTGGTTCTGATGCTGCTCCTCTTTCTGCCGGTAGTACTGGTGCTG
GTGCTGCTCCTATTTATGTTGCTGGTGCTGCTGGTGCTGGTGCTGCTCCA
ATTTCTGGTGCTGCTGATTCTGGTGCTGCTCCCCTTTCTGCTGGTGCTGC
TGATTCTGGTGCTGTTCCCCCTTCTGCTGCTGGTTCTGGTTCTGCTGCTA
CTCCTCTCTCTGCTGCTGCTACTTCTGCTGGCTCTTGTGGTGCTGGCTCT
GGTGCTGCTCCTCTTTCTGCTGCTGGTGCTGTTGGTTCTGGTGCTGTTGG
TTGTGGTGGTGGTGCTGCTGCTTCTATTTCTGCTGGCGCTGCTGCTGCTG
CTCTTTCTGCTGCTGGTGGTGGTTCTGGTGCTACTCCTCTTTCTGCTGCT
GCTGGTCTTCCGTCTATCTCTACTTCATCCTCATTATCGCCATCAATGTC
ATCGTTGTCACCACGTCAACCTTGTACCGACGATGCGCCTCCTCTGCAAG
AGACTCGTTCCCAATCGTACGCTCCGAAGGCCGAATCCGCAGCTACGGAA
GCGCTCTCCCAGCTACCGGTTTCGAAGGAGCAACGGACAGCGGCGGTGGC
AGCGGCCTCACAGGCGGCAACAGCATGGCCAGCAATAGCGAAGGGTCTGT
TGTCTACGTCATCATCGACATGCTATTCCTCATCATCGTTATCGACATCA
TCTTCATCGTCAATACCCAGGCCTCATGCCGACGAGGTACCTTCTGTGGA
AGAGGCCCATTCTCGGTCGTATGTCCCGAAGGCCGCATCTTCAGCTACCA
AAGCACTTCTCGCGCGGCCGGTCCCGAAGGAGAAGCTGGCAGCAGTCGTG
GCACCGGCTCCACAGGTAGCAACTACCGCGTCAGAAATAGTCAGGGGTCG
AATCCCTCGACGATCGGGCCGCGCACGTACGCCGTCGCCATCCCCGCAGC
TACCTACTCTGAGTGCTGGCAATCAGCCAACGTACCAACAGCCGCGATCG
AAGATGAAGCGCAAGCAGTCTAGTTCGGAAAATCCGAAAAACACAGACAC
AGTACCACCGAAGGCAAAGAAGAAGCCGCCGTCCACTTCGCGACGCCCTC
CGGGAAAACCCCGCTCGAAGTCAGCAGCAGCAGCAATGACAGCGACGGCG
AAAGCAATGGCACCAACAGCATCCACAGAACCCACAGCACCTGCAGCAGT
ATCAGCGATAGCAGCAACAGCTGCGCTGGAAACCGGGGTGTTGGAAAAGG
GGAAGGGCCCATGTAGCCGAGGGAACACGTCAGCTTCGGGTGGAGTGGCG
GAAGCGTTCCGTTCTTCGGAAGGAAATGGCTTGTCGATACTCCGCCGGGC
GATGGACAACGAACAGCCGCAGGAGACCCCGCTAACCTCTAAGCGTAAGC
CGAGGGCAAAGCCGCCGTCGAGTTCGCGGCGTGGTCCGAGAAAGAGAATT
TTGGCAGCAGCGAACATACCAGTGCCACCGTTACCGACTCCATCACCACA
GCTACCAGCAGCAGCAGAAATGACGGCGGCATGTGGCGCGGAGCGAAGCG
TGGGGGAAACCATCGTGAGCTGTGGGGCTAGTACGCATGGAGGTATGTGT
GTGTGTATATGTGTATTATTCTCTGGTGTCAGTTGTGTATTTTGTGTGTG
GTTATTCATGTGATGTATCATCTTTTTTGGAGGTGTTTACCGGCCACCTA
GGGTGGATGAGATGTAGTCAAATAGAGCTCCAGGCCCCCGCTTTGCTCTT
AGGCACTTGAGCCTTCAAATGGAACAGGTAGTGGGCTGTTTTTAATTTCT
TGAAGCGTAATTCTGGTGGTTTCTGTCATGATCTATAAGTGAATTTGCCT
GGGAAGGGGAACATCTACTGCAGCTGTTCGTCTTGTACCAACAATTTATT
TTGAGGAATTCTCGAGTGAGGCACTCAGTAATTTCGGCGTGGACACAGCG
CATGAAACCGGAGACCCTAGTAAAATCATGTGCTGTAGTGTACTACGTCA
GGGAGAATTCGAGTGAAAAATCCTTCTCTATCGCTGTGATCCTGCCCCCG
CCCGGACAGGCAGCGTAGACTTTTGTCTCGATCATGCACCTTTGAATGCG
GAATGCAGACAAGAGTGGAGACAGCTACACCTCATTTTGACGTTTTGTGG
TGTAGAACTCACGGCATGATGTTTTGATTCTCCCCGTCCTTGACTCAGTT
GATGAATTTACCCACGACTGATCCCCCCTCCCGCCACCGTTGCACGGCAC
CATGAATTCCTTGAATCTGACTTGCTCAGCGAGTGTTGCGCACGGCGTGC
CGATGTACTCGGAGGACGCGTCGAGCCGTCCGTTGGCACACCCGAACACA
GCAATGAGCTTCACCAGGGAGTCCCATGAGATGGGCAATGCGTTGATGGG
CCACCCGACAGGCATGGGATATGACACCATGGGGACCGAGCTCATAGACC
GTGGTGCTTTTGTGGCCGACGTCCACGCCTCCGAGGGTACCTACGGGGTC
AACGATCACCCCGGGGAGCCCCGTACTGTGTGGGGGGGTGATCTACACCA
GAGTGGCCACGATGCTCCTCGACGCCATCCTGCTGCTTGTCCTACCCCGT
CCAATGGCGGTGACACACGGTATCAGCGCTCCATTTAAACGCGGTGTGTA
TGGACTACGTCGGGCGTTCACGCGTCATTTCTAAAGTATGTCTGATAACG
GTGAGGTGGGTGAGGCGGCGGCGGGGGGGGAAGTGGCGAGATGTGCCTTG
TGCCCAAATTGAGTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3715:3535..6501-

>mRNA_H-paniculata_contig3715.9796.1 ID=mRNA_H-paniculata_contig3715.9796.1|Name=mRNA_H-paniculata_contig3715.9796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3012bp|location=Sequence derived from alignment at H-paniculata_contig3715:3535..6501- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCGTTGTCACCACGTCAACCTTGTACCGACGATGCGCCTCCTCT
GCAAGAGACTCGTTCCCAATCGTACGCTCCGAAGGCCGAATCCGCAGCTA
CGGAAGCGCTCTCCCAGCTACCGGTTTCGAAGGAGCAACGGACAGCGGCG
GTGGCAGCGGCCTCACAGGCGGCAACAGCATGGCCAGCAATAGCGAAGGG
TCTGTTGTCTACGTCATCATCGACATGCTATTCCTCATCATCGTTATCGA
CATCATCTTCATCGTCAATACCCAGGCCTCATGCCGACGAGGTACCTTCT
GTGGAAGAGGCCCATTCTCGGTCGTATGTCCCGAAGGCCGCATCTTCAGC
TACCAAAGCACTTCTCGCGCGGCCGGTCCCGAAGGAGAAGCTGGCAGCAG
TCGTGGCACCGGCTCCACAGGTAGCAACTACCGCGTCAGAAATAGTCAGG
GGTCGAATCCCTCGACGATCGGGCCGCGCACGTACGCCGTCGCCATCCCC
GCAGCTACCTACTCTGAGTGCTGGCAATCAGCCAACGTACCAACAGCCGC
GATCGAAGATGAAGCGCAAGCAGTCTAGTTCGGAAAATCCGAAAAACACA
GACACAGTACCACCGAAGGCAAAGAAGAAGCCGCCGTCCACTTCGCGACG
CCCTCCGGGAAAACCCCGCTCGAAGTCAGCAGCAGCAGCAATGACAGCGA
CGGCGAAAGCAATGGCACCAACAGCATCCACAGAACCCACAGCACCTGCA
GCAGTATCAGCGATAGCAGCAACAGCTGCGCTGGAAACCGGGGTGTTGGA
AAAGGGGAAGGGCCCATGTAGCCGAGGGAACACGTCAGCTTCGGGTGGAG
TGGCGGAAGCGTTCCGTTCTTCGGAAGGAAATGGCTTGTCGATACTCCGC
CGGGCGATGGACAACGAACAGCCGCAGGAGACCCCGCTAACCTCTAAGCG
TAAGCCGAGGGCAAAGCCGCCGTCGAGTTCGCGGCGTGGTCCGAGAAAGA
GAATTTTGGCAGCAGCGAACATACCAGTGCCACCGTTACCGACTCCATCA
CCACAGCTACCAGCAGCAGCAGAAATGACGGCGGCATGTGGCGCGGAGCG
AAGCGTGGGGGAAACCATCGTGAGCTGTGGGGCTAGTACGCATGGAGATG
TCATCGTTGTCACCACGTCAACCTTGTACCGACGATGCGCCTCCTCTGCA
AGAGACTCGTTCCCAATCGTACGCTCCGAAGGCCGAATCCGCAGCTACGG
AAGCGCTCTCCCAGCTACCGGTTTCGAAGGAGCAACGGACAGCGGCGGTG
GCAGCGGCCTCACAGGCGGCAACAGCATGGCCAGCAATAGCGAAGGGTCT
GTTGTCTACGTCATCATCGACATGCTATTCCTCATCATCGTTATCGACAT
CATCTTCATCGTCAATACCCAGGCCTCATGCCGACGAGGTACCTTCTGTG
GAAGAGGCCCATTCTCGGTCGTATGTCCCGAAGGCCGCATCTTCAGCTAC
CAAAGCACTTCTCGCGCGGCCGGTCCCGAAGGAGAAGCTGGCAGCAGTCG
TGGCACCGGCTCCACAGGTAGCAACTACCGCGTCAGAAATAGTCAGGGGT
CGAATCCCTCGACGATCGGGCCGCGCACGTACGCCGTCGCCATCCCCGCA
GCTACCTACTCTGAGTGCTGGCAATCAGCCAACGTACCAACAGCCGCGAT
CGAAGATGAAGCGCAAGCAGTCTAGTTCGGAAAATCCGAAAAACACAGAC
ACAGTACCACCGAAGGCAAAGAAGAAGCCGCCGTCCACTTCGCGACGCCC
TCCGGGAAAACCCCGCTCGAAGTCAGCAGCAGCAGCAATGACAGCGACGG
CGAAAGCAATGGCACCAACAGCATCCACAGAACCCACAGCACCTGCAGCA
GTATCAGCGATAGCAGCAACAGCTGCGCTGGAAACCGGGGTGTTGGAAAA
GGGGAAGGGCCCATGTAGCCGAGGGAACACGTCAGCTTCGGGTGGAGTGG
CGGAAGCGTTCCGTTCTTCGGAAGGAAATGGCTTGTCGATACTCCGCCGG
GCGATGGACAACGAACAGCCGCAGGAGACCCCGCTAACCTCTAAGCGTAA
GCCGAGGGCAAAGCCGCCGTCGAGTTCGCGGCGTGGTCCGAGAAAGAGAA
TTTTGGCAGCAGCGAACATACCAGTGCCACCGTTACCGACTCCATCACCA
CAGCTACCAGCAGCAGCAGAAATGACGGCGGCATGTGGCGCGGAGCGAAG
CGTGGGGGAAACCATCGTGAGCTGTGGGGCTAGTACGCATGGAGCGAGTG
TTGCGCACGGCGTGCCGATGTACTCGGAGGACGCGTCGAGCCGTCCGTTG
GCACACCCGAACACAGCAATGAGCTTCACCAGGGAGTCCCATGAGATGGG
CAATGCGTTGATGGGCCACCCGACAGGCATGGGATATGACACCATGGGGA
CCGAGCTCATAGACCGTGGTGCTTTTGTGGCCGACGTCCACGCCTCCGAG
GGTACCTACGGGGTCAACGATCACCCCGGGGAGCCCCGTACTGTGTGGGG
GGGTGATCTACACCAGAGTGGCCACGATGCTCCTCGACGCCATCCTGCTG
CTTGTCCTACCCCGTCCAATGGCGGTGACACACGGTATCAGCGCTCCATT
TAACGAGTGTTGCGCACGGCGTGCCGATGTACTCGGAGGACGCGTCGAGC
CGTCCGTTGGCACACCCGAACACAGCAATGAGCTTCACCAGGGAGTCCCA
TGAGATGGGCAATGCGTTGATGGGCCACCCGACAGGCATGGGATATGACA
CCATGGGGACCGAGCTCATAGACCGTGGTGCTTTTGTGGCCGACGTCCAC
GCCTCCGAGGGTACCTACGGGGTCAACGATCACCCCGGGGAGCCCCGTAC
TGTGTGGGGGGGTGATCTACACCAGAGTGGCCACGATGCTCCTCGACGCC
ATCCTGCTGCTTGTCCTACCCCGTCCAATGGCGGTGACACACGGTATCAG
CGCTCCATTTAA
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