mRNA_H-paniculata_contig37148.9795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37148.9795.1
Unique NamemRNA_H-paniculata_contig37148.9795.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: A0A7H4LDI7_WHEAT (Genome assembly, chromosome: II n=2 Tax=Triticinae TaxID=1648030 RepID=A0A7H4LDI7_WHEAT)

HSP 1 Score: 96.7 bits (239), Expect = 5.450e-21
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   10 RKQQLGMWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGLSRVQFR 336
            +KQ++   SS EAEYVAA  +  + ++L  L+R +     G+TT+F DNKSAI L K    H R+KHI VR+H IR+ + EG + +K++ TGD LADI TK L R +F+
Sbjct: 1176 QKQKIVALSSCEAEYVAATTAACQAIWLSRLMRDLLKEEAGATTIFIDNKSAIQLCKNPVCHDRSKHIDVRFHFIRKCVEEGKIRVKHIATGDQLADIFTKSLGRTRFQ 1284          
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: A0A4Y9XMG5_9AGAM (Uncharacterized protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9XMG5_9AGAM)

HSP 1 Score: 88.2 bits (217), Expect = 3.920e-20
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   10 RKQQLGMWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGLSRVQFRN 339
            +KQ     SSTEAEY+    + KE ++LR  L  +     G T L  DN+SA+ ++     H R KHI VR H + E ++EGIL L+Y+ TG+ +AD+LTKGL R + ++
Sbjct:   12 KKQPSTALSSTEAEYIMGAHAAKEAIWLRGFLAELWQPRSGPTILLMDNQSAMVIAWNPAFHARMKHIDVRHHFLHEKVKEGILDLEYIPTGEQVADVLTKGLPREKHKH 121          
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 89.4 bits (220), Expect = 6.920e-20
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   10 RKQQLGMWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGLSRVQF 333
            ++Q     S+ EAEY+A   + +E V++REL   +     G TT+FEDN+SAI+++K    H R KHIG+++H IRE +    + +KY +T D +ADI TKGL+  +F
Sbjct:   63 KRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKF 170          
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: A0A5N6P4R5_9ASTR (Pyruvate carboxyltransferase domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P4R5_9ASTR)

HSP 1 Score: 93.2 bits (230), Expect = 8.310e-20
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   34 SSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGLSRVQF 333
            SSTEAEY++A  +  E ++LR +L+ +GF  + STT++ DNKSAINLSK    H R+KHI ++ H  RE + +  ++L+Y  T   LAD+LTK L R +F
Sbjct:  132 SSTEAEYISATAATCEAIWLRRILQDLGFEQKESTTIYCDNKSAINLSKNPVMHSRSKHIELKHHFFREMVMQKQVSLEYCSTHSQLADVLTKSLCREKF 231          
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: A0A5N6MBA7_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MBA7_9ASTR)

HSP 1 Score: 93.2 bits (230), Expect = 8.410e-20
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   10 RKQQLGMWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGLSR---VQFRN 339
            RKQ     SS+EAEY+AA  +  +GV+LR +L  +G      TT+F DNKSAINLS+    H R+KHI ++ H IR+ +++ ++ L++  T + LAD+LTK  S+   VQFR+
Sbjct:  388 RKQSTVALSSSEAEYIAATAAACQGVWLRRILEDLGCDQELPTTIFCDNKSAINLSRNPIMHSRSKHIELKHHFIRDLVKQNVIQLEFCGTNEQLADMLTKAFSKEKFVQFRS 500          
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: A0A6G0WQK1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQK1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.980e-20
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   10 RKQQLGMWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGLSRVQF 333
            RKQ L   S+TE E++AA E+ K  V+LRELL  + F     T L  DN+S I +   S SH RTKHI +R+H I++ + EG++ L+Y+ T + +ADILT+G+    F
Sbjct:  378 RKQSLVGHSTTEVEFIAAAEAAKSIVWLRELLEEMSFVVNSPTYLHVDNQSTIQVVHRSSSHDRTKHIRLRFHFIKDLVEEGMIKLRYINTKEQVADILTRGIVLAHF 485          
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: A0A1Y1N2L1_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N2L1_PHOPY)

HSP 1 Score: 91.3 bits (225), Expect = 1.460e-19
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   10 RKQQLGMWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGLSR 324
            +KQ+    SSTEAEY+   E+ KEG+YLR++   +G        +F DN SAI LS+    H R+KHI +R+H IRE ++ GI+++ ++ T + L+DILTK L R
Sbjct:  214 KKQKTVALSSTEAEYMGMTEALKEGIYLRKMFLELGLNDLSKMKMFNDNLSAIKLSENPTFHARSKHIDIRYHFIREALKNGIISIGHISTENMLSDILTKRLPR 318          
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C)

HSP 1 Score: 88.6 bits (218), Expect = 1.670e-19
Identity = 48/109 (44.04%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   10 RKQQLGMWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGLSRVQFR 336
            +KQ+    S+TEAE+VA+ E+GKE V++   L+ +         LF DN+SAI + +    H RTKHI VR+H IRE   +G++  KYV T + LADILTK L+  +F+
Sbjct:   86 KKQKCTAQSTTEAEFVASSEAGKEAVWILRGLKELEGDVPTPMELFMDNQSAIRIIRNPELHQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTKPLAAPRFQ 194          
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: A0A8J2RPB7_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RPB7_9CRUS)

HSP 1 Score: 92.4 bits (228), Expect = 1.680e-19
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   10 RKQQLGMWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGL 318
            R+Q     SSTEAEYVAA  + K  ++ R+LL  IG      TTL  DN+ AI+L K SG   R+KHI V++H IR+ ++EG + ++Y+ T   LADILTK L
Sbjct: 1284 RRQDCVSLSSTEAEYVAASAATKTVIWFRQLLDDIGCEQTSPTTLLCDNQGAISLVKNSGHQARSKHIDVKYHHIRDMVKEGAIHIEYIHTSQQLADILTKPL 1386          
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Match: A0A4S4L116_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L116_9AGAM)

HSP 1 Score: 91.3 bits (225), Expect = 2.050e-19
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 1
Query:   10 RKQQLGMWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLSKGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADI 303
            +KQ     SST+AEYVA   + KE V+L  L   I   C+G TTLF DN+SA+ +++    H RTKHIG R H +RE + +G L LKY+ TGD +AD+
Sbjct:  288 KKQGSTALSSTKAEYVAGTHAAKELVWLWALFAEISLPCKGPTTLFMDNQSAMAIAENPVYHARTKHIGARHHFLRERVEDGELELKYLPTGDQMADV 385          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37148.9795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7H4LDI7_WHEAT5.450e-2146.79Genome assembly, chromosome: II n=2 Tax=Triticinae... [more]
A0A4Y9XMG5_9AGAM3.920e-2041.82Uncharacterized protein n=1 Tax=Dentipellis fragil... [more]
A0A1X7SFX4_AMPQE6.920e-2041.67Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A5N6P4R5_9ASTR8.310e-2047.00Pyruvate carboxyltransferase domain-containing pro... [more]
A0A5N6MBA7_9ASTR8.410e-2044.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0WQK1_9STRA9.980e-2044.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1N2L1_PHOPY1.460e-1943.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1BA65C1.670e-1944.04secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A8J2RPB7_9CRUS1.680e-1947.57Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A4S4L116_9AGAM2.050e-1947.96Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37148contigH-paniculata_contig37148:1413..1751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue6.9e-18
Seed eggNOG ortholog67593.Physo133508
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.5965784-UTR-H-paniculata_contig37148:1412..14391622930145.5965784-UTR-H-paniculata_contig37148:1412..1439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig37148 1413..1439 +
1691481165.5406115-UTR-H-paniculata_contig37148:1412..14391691481165.5406115-UTR-H-paniculata_contig37148:1412..1439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig37148 1413..1439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.6164818-CDS-H-paniculata_contig37148:1439..17511622930145.6164818-CDS-H-paniculata_contig37148:1439..1751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37148 1440..1751 +
1691481165.5543664-CDS-H-paniculata_contig37148:1439..17511691481165.5543664-CDS-H-paniculata_contig37148:1439..1751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37148 1440..1751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37148.9795.1prot_H-paniculata_contig37148.9795.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37148 1440..1751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37148.9795.1

>prot_H-paniculata_contig37148.9795.1 ID=prot_H-paniculata_contig37148.9795.1|Name=mRNA_H-paniculata_contig37148.9795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MWSSTEAEYVAAEESGKEGVYLRELLRSIGFGCRGSTTLFEDNKSAINLS
KGSGSHCRTKHIGVRWHGIREWIREGILALKYVQTGDHLADILTKGLSRV
QFRN
back to top

mRNA from alignment at H-paniculata_contig37148:1413..1751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37148.9795.1 ID=mRNA_H-paniculata_contig37148.9795.1|Name=mRNA_H-paniculata_contig37148.9795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig37148:1413..1751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACGATTAAGGAAGCAACAGTTAGGCATGTGGTCCAGTACAGAGGCAGA GTACGTTGCTGCAGAAGAATCGGGAAAGGAGGGGGTATATCTTAGGGAGT TACTACGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTGAG GACAATAAATCAGCTATTAATCTCAGCAAGGGATCTGGCTCACACTGCAG GACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGG AAGGAATATTGGCATTGAAATATGTGCAGACCGGAGATCACCTTGCTGAC ATTTTAACGAAAGGACTAAGCAGAGTACAGTTCAGAAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig37148:1413..1751+

>mRNA_H-paniculata_contig37148.9795.1 ID=mRNA_H-paniculata_contig37148.9795.1|Name=mRNA_H-paniculata_contig37148.9795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig37148:1413..1751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGAAGAATCGGGAAA
GGAGGGGGTATATCTTAGGGAGTTACTACGATCGATAGGTTTCGGATGCA
GGGGGAGCACGACATTGTTTGAGGACAATAAATCAGCTATTAATCTCAGC
AAGGGATCTGGCTCACACTGCAGGACAAAGCACATCGGAGTGCGCTGGCA
CGGAATTCGAGAGTGGATTCGGGAAGGAATATTGGCATTGAAATATGTGC
AGACCGGAGATCACCTTGCTGACATTTTAACGAAAGGACTAAGCAGAGTA
CAGTTCAGAAACATGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGA
AGAATCGGGAAAGGAGGGGGTATATCTTAGGGAGTTACTACGATCGATAG
GTTTCGGATGCAGGGGGAGCACGACATTGTTTGAGGACAATAAATCAGCT
ATTAATCTCAGCAAGGGATCTGGCTCACACTGCAGGACAAAGCACATCGG
AGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGGAAGGAATATTGGCAT
TGAAATATGTGCAGACCGGAGATCACCTTGCTGACATTTTAACGAAAGGA
CTAAGCAGAGTACAGTTCAGAAAC
back to top