mRNA_H-paniculata_contig37114.9789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37114.9789.1
Unique NamemRNA_H-paniculata_contig37114.9789.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: A0A6H5JYY6_9PHAE (SQHop_cyclase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.310e-34
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   28 QQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            QQ DGGWGTHIECASTMFGTVLSY+SLRLLGV  ED AC +G+ F+R+NGG  MAPSWAKFW+AVLGVY+WE
Sbjct:  220 QQADGGWGTHIECASTMFGTVLSYISLRLLGVSVEDGACARGLKFVRENGGGSMAPSWAKFWMAVLGVYEWE 291          
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: D8LFF9_ECTSI (Cycloartenol synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.880e-34
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   28 QQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            QQ DGGWGTHIECASTMFGTVLSY+SLRLLGV  ED AC +G+ F+R+NGG  MAPSWAKFW+AVLGVY+WE
Sbjct:  220 QQADGGWGTHIECASTMFGTVLSYISLRLLGVSVEDGACARGLKFVRENGGGSMAPSWAKFWMAVLGVYEWE 291          
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: A0A813LWY9_POLGL (Hypothetical protein (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LWY9_POLGL)

HSP 1 Score: 116 bits (290), Expect = 1.070e-29
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   28 QQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            QQ DGGWGTH+E  STMFG+VL+YV+LRL+G   + PAC++G  F+R++GG + APSWAKFWLAVLGVY+WE
Sbjct:  208 QQEDGGWGTHVESPSTMFGSVLNYVTLRLVGAAVDSPACIEGRKFMREHGGALYAPSWAKFWLAVLGVYEWE 279          
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: A0A812I188_9DINO (OSCPNX1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812I188_9DINO)

HSP 1 Score: 119 bits (298), Expect = 1.630e-29
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   28 QQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            QQ DGGWG+HIE  STMFGTVL+YV+LRL+GV SEDPAC +G AF+  +GG + APSWAKFWLA LGVYDW+
Sbjct:  199 QQQDGGWGSHIESPSTMFGTVLNYVALRLVGVDSEDPACKQGRAFLDQHGGALYAPSWAKFWLACLGVYDWD 270          
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: A0A6U4XWX2_HEMAN (Terpene cyclase/mutase family member n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4XWX2_HEMAN)

HSP 1 Score: 118 bits (295), Expect = 4.090e-29
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   28 QQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            QQ DGGWGTHIE +STMFGTVLSYVSLRLLGVPS D  C+    FIR  GG V  PSWAKFWL++LGV++WE
Sbjct:  259 QQADGGWGTHIEASSTMFGTVLSYVSLRLLGVPSGDTQCIHAREFIRSKGGAVTCPSWAKFWLSLLGVHEWE 330          
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: A0A7S1CYZ6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYZ6_CYCTE)

HSP 1 Score: 108 bits (269), Expect = 6.770e-29
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 1
Query:   37 DGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            DGGWGTHIE  STMFGTVL YV+LRLLG   +DP CVKG AFIRDNGG +M  SWAKF L +LG  +W+
Sbjct:    1 DGGWGTHIESPSTMFGTVLMYVALRLLGKDMDDPICVKGRAFIRDNGGAIMTSSWAKFSLCLLGCMEWD 69          
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: A0A813BLP7_9DINO (Terpene cyclase/mutase family member n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A813BLP7_9DINO)

HSP 1 Score: 116 bits (291), Expect = 1.410e-28
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   28 QQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            QQ DGGWG+HIE  STMFGTVL+YV+LRL GV ++DPAC KG  F++ +GG + APSWAKFWLA LGVYDW+
Sbjct:  196 QQQDGGWGSHIESPSTMFGTVLNYVALRLAGVDADDPACKKGREFMQQHGGALYAPSWAKFWLACLGVYDWD 267          
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: A0A6T5V9R7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5V9R7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.200e-28
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   28 QQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            QQ DGGWGTHIECASTMFGT+LSY+SLRLLG+ S +     G  F+ D+GG   APSWAKFWLA +GVYDW+
Sbjct:  190 QQEDGGWGTHIECASTMFGTILSYISLRLLGISSNEDFMKLGRKFLLDHGGARYAPSWAKFWLASIGVYDWK 261          
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: A0A482SSA2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSA2_9ARCH)

HSP 1 Score: 114 bits (286), Expect = 6.560e-28
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    7 ESTVSFL---QQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            E  +++L   QQ DGGWGTHIECASTMFGTVL+YV+LRLLGV +++    KG  FI   GG + APSWAKFWLAV+GVYDW+
Sbjct:  133 EGMIAYLKNHQQLDGGWGTHIECASTMFGTVLNYVALRLLGVSADEEYMKKGREFILKWGGALFAPSWAKFWLAVIGVYDWD 214          
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Match: A0A812RL08_SYMPI (Terpene cyclase/mutase family member (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812RL08_SYMPI)

HSP 1 Score: 114 bits (285), Expect = 8.580e-28
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   28 QQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVKGVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE 243
            QQ DGGWG+HIE  STMFGTVL+YV+LRL GV ++DPAC +G  F++++GG + APSWAKFWLA LGVY+W+
Sbjct:   52 QQQDGGWGSHIESPSTMFGTVLNYVALRLAGVDADDPACKEGRKFMQEHGGALYAPSWAKFWLACLGVYEWD 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37114.9789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYY6_9PHAE1.310e-3479.17SQHop_cyclase_N domain-containing protein n=1 Tax=... [more]
D8LFF9_ECTSI3.880e-3479.17Cycloartenol synthase n=1 Tax=Ectocarpus siliculos... [more]
A0A813LWY9_POLGL1.070e-2966.67Hypothetical protein (Fragment) n=3 Tax=Polarella ... [more]
A0A812I188_9DINO1.630e-2972.22OSCPNX1 protein n=1 Tax=Symbiodinium natans TaxID=... [more]
A0A6U4XWX2_HEMAN4.090e-2972.22Terpene cyclase/mutase family member n=2 Tax=Hemis... [more]
A0A7S1CYZ6_CYCTE6.770e-2969.57Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A813BLP7_9DINO1.410e-2869.44Terpene cyclase/mutase family member n=5 Tax=Symbi... [more]
A0A6T5V9R7_9STRA5.200e-2868.06Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A482SSA2_9ARCH6.560e-2864.63Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A812RL08_SYMPI8.580e-2866.67Terpene cyclase/mutase family member (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37114contigH-paniculata_contig37114:312..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.2e-29
Seed eggNOG ortholog2880.D8LFF9
KEGG rclassRC00874,RC01582,RC01850,RC01851
KEGG koko:K01852,ko:K01853,ko:K06045
KEGG ReactionR03199,R03200,R07322,R07323
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
KEGG ModuleM00101
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidosqualene cyclase activity
EggNOG OGsCOG1657@1,KOG0497@2759
EC4.2.1.129,5.4.99.17,5.4.99.7,5.4.99.8
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.7830262-CDS-H-paniculata_contig37114:311..5541622930144.7830262-CDS-H-paniculata_contig37114:311..554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37114 312..554 -
1691481165.136417-CDS-H-paniculata_contig37114:311..5541691481165.136417-CDS-H-paniculata_contig37114:311..554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37114 312..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37114.9789.1prot_H-paniculata_contig37114.9789.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37114 312..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37114.9789.1

>prot_H-paniculata_contig37114.9789.1 ID=prot_H-paniculata_contig37114.9789.1|Name=mRNA_H-paniculata_contig37114.9789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MSESTVSFLQQTDGGWGTHIECASTMFGTVLSYVSLRLLGVPSEDPACVK
GVAFIRDNGGVVMAPSWAKFWLAVLGVYDWE
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mRNA from alignment at H-paniculata_contig37114:312..554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37114.9789.1 ID=mRNA_H-paniculata_contig37114.9789.1|Name=mRNA_H-paniculata_contig37114.9789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig37114:312..554- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGAATCTACCGTCTCCTTCCTACAACAGACCGATGGAGGATGGGG CACGCACATCGAGTGCGCGTCCACCATGTTCGGCACCGTGCTTTCCTATG TCTCGCTGCGCCTGCTTGGAGTCCCGTCGGAGGATCCAGCGTGCGTAAAG GGGGTGGCTTTCATCAGGGACAACGGAGGGGTAGTGATGGCTCCGAGCTG GGCTAAGTTTTGGTTGGCCGTGCTGGGTGTTTATGACTGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig37114:312..554-

>mRNA_H-paniculata_contig37114.9789.1 ID=mRNA_H-paniculata_contig37114.9789.1|Name=mRNA_H-paniculata_contig37114.9789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig37114:312..554- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGAATCTACCGTCTCCTTCCTACAACAGACCGATGGAGGATGGGG
CACGCACATCGAGTGCGCGTCCACCATGTTCGGCACCGTGCTTTCCTATG
TCTCGCTGCGCCTGCTTGGAGTCCCGTCGGAGGATCCAGCGTGCGTAAAG
GGGGTGGCTTTCATCAGGGACAACGGAGGGGTAGTGATGGCTCCGAGCTG
GGCTAAGTTTTGGTTGGCCGTGCTGGGTGTTTATGACTGGGAGATGTCCG
AATCTACCGTCTCCTTCCTACAACAGACCGATGGAGGATGGGGCACGCAC
ATCGAGTGCGCGTCCACCATGTTCGGCACCGTGCTTTCCTATGTCTCGCT
GCGCCTGCTTGGAGTCCCGTCGGAGGATCCAGCGTGCGTAAAGGGGGTGG
CTTTCATCAGGGACAACGGAGGGGTAGTGATGGCTCCGAGCTGGGCTAAG
TTTTGGTTGGCCGTGCTGGGTGTTTATGACTGGGAG
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