mRNA_H-paniculata_contig3707.9781.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3707.9781.1
Unique NamemRNA_H-paniculata_contig3707.9781.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3707.9781.1 vs. uniprot
Match: D8LK01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK01_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 4.480e-37
Identity = 70/106 (66.04%), Postives = 81/106 (76.42%), Query Frame = 1 
Query:    1 MSLQGSIHKWSDGIGYGAFIPTNSAYFNARPRTPKGMNVTACARARAREKPSSQMTRAYREHNVTAGIDTNRSDISFGKTKESVRGGIEGDPRAREATKRLTSGEV 318
            MSLQGSIH WSDGIGYGAF+PT+ AYFN R  TP         RA  R +PSS+  R YR +NVTAGIDT+RSD+SFG+  ES+RGG++GD RAREATK LTSGEV
Sbjct:    1 MSLQGSIHTWSDGIGYGAFMPTDRAYFNVR--TP---------RASVR-RPSSENVREYRRNNVTAGIDTHRSDVSFGRNTESIRGGVDGDSRAREATKSLTSGEV 94
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BLAST of mRNA_H-paniculata_contig3707.9781.1 vs. uniprot
Match: A0A835YTX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.400e-8
Identity = 34/104 (32.69%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:    7 LQGSIHKWSDGIGYGAFIPTNSAYFNARPRTPKGMNVTACARARAREKPSSQMTRAYREHNVTAGIDTNRSDISFGKTKESVRGGIEGDPRAREATKRLTSGEV 318
            + GS H+ +DG G G ++P++ A++N     P               +P++Q    YR  N   GI+T+RSDIS+G T   +  G   +  A      LTSGEV
Sbjct:    1 MHGSKHRMTDGYGCGQYVPSDKAFYNMHTARPGD-----------HRRPTNQ---TYRRDNSLVGIETHRSDISYGHTVARISTGPNAERLATLHATMLTSGEV 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3707.9781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK01_ECTSI4.480e-3766.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTX7_9STRA4.400e-832.69Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3707contigH-paniculata_contig3707:16081..17306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_007640.1
Exons2
Model size453
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.3308234-CDS-H-paniculata_contig3707:16080..163951622930143.3308234-CDS-H-paniculata_contig3707:16080..16395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 16081..16395 +
1691481164.4518957-CDS-H-paniculata_contig3707:16080..163951691481164.4518957-CDS-H-paniculata_contig3707:16080..16395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 16081..16395 +
1622930143.3448858-CDS-H-paniculata_contig3707:17168..173061622930143.3448858-CDS-H-paniculata_contig3707:17168..17306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 17169..17306 +
1691481164.4607167-CDS-H-paniculata_contig3707:17168..173061691481164.4607167-CDS-H-paniculata_contig3707:17168..17306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 17169..17306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3707.9781.1prot_H-paniculata_contig3707.9781.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3707 16081..17306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3707.9781.1

>prot_H-paniculata_contig3707.9781.1 ID=prot_H-paniculata_contig3707.9781.1|Name=mRNA_H-paniculata_contig3707.9781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MSLQGSIHKWSDGIGYGAFIPTNSAYFNARPRTPKGMNVTACARARAREK
PSSQMTRAYREHNVTAGIDTNRSDISFGKTKESVRGGIEGDPRAREATKR
LTSGEVGDFCWPAERAQAREFDVERILAPSDNSSHDVASAVQASSGSLSA
R
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mRNA from alignment at H-paniculata_contig3707:16081..17306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3707.9781.1 ID=mRNA_H-paniculata_contig3707.9781.1|Name=mRNA_H-paniculata_contig3707.9781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-paniculata_contig3707:16081..17306+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCTTCAGGGATCCATACACAAGTGGTCGGATGGCATCGGCTATGG
CGCCTTTATTCCCACAAACAGCGCGTACTTTAATGCCCGCCCTCGAACAC
CGAAGGGCATGAACGTGACCGCGTGCGCGCGAGCTCGAGCTCGAGAAAAA
CCTTCCAGTCAGATGACCAGGGCCTACCGAGAGCACAACGTCACGGCCGG
AATCGACACCAACCGTTCCGATATTTCTTTTGGAAAAACGAAGGAGAGCG
TGCGCGGAGGTATCGAGGGCGATCCACGTGCTCGGGAGGCCACGAAACGC
TTGACCAGTGGGGAGGTGGGAACCATTTTCTCGTTCAATATCGCTAAGTA
GGGTGTGATAAAGAGAGAAGGGCTTACCTCAAGTTAGGCGTCACATCGTG
GTGCTCCGTTCAACCGCTATCACCATTATGATATCATCGAAAATTTACAT
ATGGGTTCACGGATGTATCCTGAAGGTGTTTGTTTTCGTCAATGGCATCT
GTTTGCCGCGATTCGCTCGTTGGCTAAGATCTTCGCGTGGGAATCTAGCT
GTGTGATATTCACTCTCCTTGCTGACCACAAACATTGGGCAGTCGATGCC
CTTCAGTTAATACCCCTGGCGTTTAATTACTGCGAATAATAAGTAAACCC
CAATAGCACCAGTTAAGAGAAGAGCGGTTCGATTGCAGAGTGCTCGACCA
CGACGAGGTAAAAGGGCATTTAATTACATTTGGATTTTGGGCGTAACAAG
GAACCCATTGACCCCATTCAGAGACAGTTGAACGATGAGCTCTGTCTAAA
TATGGTACACCTCTGGTGATCAAGGTCTTCCTACGATAACTAGAGGTATA
TGTTTTCTGGGGTATGTCGCGAGCGGTGGACTCCGATGCACACCCAAATA
ATATCCCTCGCCTACTAACGAAATGCAAGGCTGGGCAAAGCACAGATCAA
GCACACCGAATTAGAGCGGTCGTAGCATGCTTGTACCCTTCACGAGGGTA
AGGTTGTATGTGCGGCACTAAGCCATTTATACGCTTTTTTTGTCTCCCCT
TGGTTTAATCAAACAACATTACGTATAACCCCCAAAAGGTTGGAGATTTC
TGCTGGCCAGCCGAGCGTGCACAGGCCCGCGAATTTGACGTGGAAAGAAT
CCTAGCGCCTTCTGATAATTCTTCCCACGACGTAGCGTCTGCTGTACAAG
CCTCGTCCGGTTCACTATCTGCTCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig3707:16081..17306+

>mRNA_H-paniculata_contig3707.9781.1 ID=mRNA_H-paniculata_contig3707.9781.1|Name=mRNA_H-paniculata_contig3707.9781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig3707:16081..17306+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCTTCAGGGATCCATACACAAGTGGTCGGATGGCATCGGCTATGG
CGCCTTTATTCCCACAAACAGCGCGTACTTTAATGCCCGCCCTCGAACAC
CGAAGGGCATGAACGTGACCGCGTGCGCGCGAGCTCGAGCTCGAGAAAAA
CCTTCCAGTCAGATGACCAGGGCCTACCGAGAGCACAACGTCACGGCCGG
AATCGACACCAACCGTTCCGATATTTCTTTTGGAAAAACGAAGGAGAGCG
TGCGCGGAGGTATCGAGGGCGATCCACGTGCTCGGGAGGCCACGAAACGC
TTGACCAGTGGGGAGATGAGCCTTCAGGGATCCATACACAAGTGGTCGGA
TGGCATCGGCTATGGCGCCTTTATTCCCACAAACAGCGCGTACTTTAATG
CCCGCCCTCGAACACCGAAGGGCATGAACGTGACCGCGTGCGCGCGAGCT
CGAGCTCGAGAAAAACCTTCCAGTCAGATGACCAGGGCCTACCGAGAGCA
CAACGTCACGGCCGGAATCGACACCAACCGTTCCGATATTTCTTTTGGAA
AAACGAAGGAGAGCGTGCGCGGAGGTATCGAGGGCGATCCACGTGCTCGG
GAGGCCACGAAACGCTTGACCAGTGGGGAGGTTGGAGATTTCTGCTGGCC
AGCCGAGCGTGCACAGGCCCGCGAATTTGACGTGGAAAGAATCCTAGCGC
CTTCTGATAATTCTTCCCACGACGTAGCGTCTGCTGTACAAGCCTCGTCC
GGTTCACTATCTGCTCGTGTTGGAGATTTCTGCTGGCCAGCCGAGCGTGC
ACAGGCCCGCGAATTTGACGTGGAAAGAATCCTAGCGCCTTCTGATAATT
CTTCCCACGACGTAGCGTCTGCTGTACAAGCCTCGTCCGGTTCACTATCT
GCTCGT
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