mRNA_H-paniculata_contig37042.9775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 146 bits (368), Expect = 2.870e-35 Identity = 118/351 (33.62%), Postives = 167/351 (47.58%), Query Frame = 1
Query: 1 GEEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQETSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHIVSDNNMVGINQWGSKCPEHLACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVV-----------------KNLD-MRQHFCDGMLWLSVGEN--AVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
G E+P+VG KTL IR + SN E+L AL RC ++ V+ KW Q +S + C+ E ARC+ RG R + ND ++ TLN ++ L D LA GI +K + A + A + P VPV A +P G P SWHV R V +AV EHL+ + P++VGLVG SG+GKTT AA +V + L+ +R+HF DG++WL VG + +RV A+MS+LA V++ + P GG ++ + D G G A KRCLVVAD+VWE+ ++EEL+
Sbjct: 77 GGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARCSRRGLCGRCTKASSDND---ELLTLNSRVDSLTGDLGLA------------GIASLDAKVDDLKAMLAEVIA-QNTMPASVPV-----AAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQT---PQVVGLVGRSGSGKTTCAASIVGESTGRRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPTGGGSAF----ISDFV------RGKGSAAG-----RKRCLVVADDVWEVDILEELR 388
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: D7G5K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K4_ECTSI) HSP 1 Score: 133 bits (335), Expect = 6.270e-33 Identity = 95/268 (35.45%), Postives = 142/268 (52.99%), Query Frame = 1
Query: 1 GEEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQETSPP--FKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHI---VSDNNMVGINQWGSKCPEHLACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQI 789
G E+P+VG KTL +R V+T N+++L AL RC ++ V+ K+ Q P + C+ E+ A RC R + + D ++ TLN I++LV D LA I + V+D + + Q S + A + L A + +P A+IP+G P KSWHVER+ V + V+E L AGP LVGLVG SGAGKTT A+ +V + +R+ F DG++WL+V A +R+ ++M +LA MV + I
Sbjct: 35 GGELPVVGTVLKTLTAMRETVETVQQNRDELAALEKRCTYMTASVIVKFRQIPQPGSGLDVTPLKDCVVVAEKFAERCKKRRMRWEIVKAFSVKD---ELATLNARIDRLVGDLGLAGIATVLGEVADLKGMMLEQMVS---DQAAAQKELLANQEIVIDRLPKPPTKKADIPQGTPMRKSWHVERRHVMDTVVEALTGE---AGPHLVGLVGDSGAGKTTAASELVGSNVVRESFSDGIVWLAVNYGANKRLPSLMLQLARMVHEDI 293
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 134 bits (337), Expect = 3.790e-31 Identity = 109/343 (31.78%), Postives = 155/343 (45.19%), Query Frame = 1
Query: 1 GEEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQE-TSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCA-HTNDIASQIKTLNDTINQLVMDNALARIIHIVSD-----------NNMVGINQWGSKCPEHLACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEEL 990
GEE+PL+ +TL IR V+T N E L L RC ++ + K T P + C+ VE+ R RG + R + DI + L D L + + ++++D +G Q G+ H + IL +P A +AN+P+G P KSWHVER+ V E V + L G GP LVGLVG SGAGKTT A+ +V ++ +R+ F DG++WL V E + +M +LA MV++ I R P G D + V + H G G +CLVVADNVWE V+ +L
Sbjct: 34 GEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTELDVAP--LEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGN----HEELLAKTETILR----QLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADG---GPHLVGLVGDSGAGKTTAASAIVSSIVVRETFSDGIVWLPVNEGVHDNLPCLMLQLAQMVFEDIGGSVGRRP-----SGSDDGLAYVKQQVENGH---GGKGL----------KCLVVADNVWESDVVSQL 345
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KXU5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU5_9PHAE) HSP 1 Score: 134 bits (336), Expect = 4.640e-31 Identity = 109/344 (31.69%), Postives = 162/344 (47.09%), Query Frame = 1
Query: 4 EEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQ-ETSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHIVSDNNMVGINQWGSKCPEHLACRL------RLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLA-------PSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
+E P VG ACK L LV TA SNK +L L D +L R V + + E + + + E +A CN +G L R I ++I+++ + +H + NN+V ++ K + RL L+A++ KP V NIP G P+ + W+VER V+ + HL PS PR+VGL GP GAGK+T+A+MVV +D++ F +LWLSVG+ A R+ +M +LA V + + K R P + V G + +D GA Y+ E K + R LVVAD+VW+ V+ EL+
Sbjct: 27 QETPAVGIACKAYLAFEDLVQTATSNKLELSVLGELIDLVLQRYVKRCAEREQGVRQELLSLENHIKSAESVAGLCNGKG-LKRLKQLTLCRRICNEIESVRKNV------------LHFCTINNLVLTSELSFKLDD--VARLLEAQDQTLKAVME-KPGRV--------NIPSGAPSIRDWYVERVKVEAQICHHLGIGTSNGIPSFPEEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPTLMFELAKTVRETVLQKMARRPREATV--GINSED--------------GAAYIREEAGKGDTRFLVVADDVWDAEVLAELR 330
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE) HSP 1 Score: 134 bits (336), Expect = 4.790e-31 Identity = 102/338 (30.18%), Postives = 157/338 (46.45%), Query Frame = 1
Query: 10 MPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQETSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHIVSDNNMVGINQWGSKCP------EHLACRLRLR-----AILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEEL 990
+PL+ KTL + AL RC ++ V+ + ++ S K +++C+ V RC+ RG L R + + + +K R+ + D + GI G K EH+ + L A + V + +A +P G PA KSWHVER+ V AV + L G GPRLVGLVG SG+GKTT AA +V++ ++R+ F DG++WLSV + A +R+ A+M LA +V++ I R P ++D A+ + R +G+ + ++ CLVVADNVWE VI +L
Sbjct: 23 LPLIEPVLKTLKAVXXXXXXXXXXXXXXAALYQRCTYITGCVIVR-CRKGSSGLKATPLMECVNAVGAFVERCSRRGMLSRVLKATDDKEEIAGLKQ---------------RLEDLEGDLRLAGIATVGGKVEDLKALLEHVDTKQALSHSQTLANHDIMFARVGISPETLATVPAGTPARKSWHVERRHVMRAVCDALPGEG---GPRLVGLVGDSGSGKTTAAAEIVRSTEVREAFSDGIVWLSVNDGATERLRALMMHLARVVFEDIGGSVGRRP-------------AGLDDGAAYTRQRMQSGHGGKGLK-----CLVVADNVWEEAVISKL 323
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE) HSP 1 Score: 124 bits (312), Expect = 7.470e-28 Identity = 102/356 (28.65%), Postives = 155/356 (43.54%), Query Frame = 1
Query: 1 GEEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQETSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHIVSDNNMVGINQWGSKCPEHLACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKN-------LD----------------MRQHFCDGMLWLSVG--ENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
G P+V C LLK +G+VD A NKE+L LC RCD + +V++K + + C+ ++ +A R +++G L R D I+ L I +V LA +++I+ RL + + P +A +P G+PA ++WH R V++ V + L SG P + L G SGAGK+T AA +V+N LD +R F DG+++L VG E A R+ +M KLA + + + KT P G YV ++M + +KRCLVVAD+VWE V+ +LK
Sbjct: 112 GAATPVVAPLCVALLKAKGIVDGASRNKEELGELCERCDLITVQVIDKAKASNTSTIDVSPLQGCVDKLDEVAKRYHDQGCLARLAQFRRDGD---DIQRLRARIEAIVPIMGLAGVVNIMD----------------------RLEDVRQILARLQPRPRPKLAPVPPGLPAGEAWHAVRDHVEDEVYKIL--SGDE--PAVAALTGKSGAGKSTAAADMVRNRKVDIRGLDDETEDQARTRMDRLERVRARFSDGVVYLRVGKGEGAADRLPDLMRKLAKALHEDVLKKTAGAP----------------------EAGEKGESYVKKMMTRTKKRCLVVADDVWEPPVVAKLK 416
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.210e-25 Identity = 69/173 (39.88%), Postives = 102/173 (58.96%), Query Frame = 1
Query: 484 AAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRK----HEKRCLVVADNVWELGVIEEL 990
A + +P+G PA KSW+V+R+ V + V E LA G GPRLVGLVG SG+GKTT+A+ V++ ++++ F DG+ WLSV + A +R+S++M +LA +V++ I R P S DC A Y+ + M+K + +CLVVADNVWE V+ +L
Sbjct: 31 AKLTKVPKGTPARKSWYVKRRHVMDTVFEGLASDG---GPRLVGLVGGSGSGKTTVASESVRSTEVQEAFSDGIAWLSVNDGAKERLSSLMLQLARVVYEDIGCSVGRRPT--------SSDDC--------------AAYIRQRMKKGTGGKKLKCLVVADNVWEKEVVSKL 178
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: D7G5Y4_ECTSI (NB-ARC and TPR containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y4_ECTSI) HSP 1 Score: 108 bits (269), Expect = 2.540e-22 Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = 1
Query: 496 NIPRGIPATKSWHVERQAVKEAVLEHLA-------PSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
NIP G P+ + W+VER V + HL PS PR+VGL GP GAGK+T+A+MVV +D++ F +LWLSVG+ A R+ A+M +LA V + + K R P + V G + +D GA Y+ E K + R LVVAD+VW+ V+ EL+
Sbjct: 8 NIPSGAPSIRDWYVERVGVATQICHHLGIGTSNGIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPALMFELANRVRETVLQKMARRPREATV--GINSED--------------GAAYIREEAGKGDTRFLVVADDVWDAEVLGELR 164
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE) HSP 1 Score: 103 bits (258), Expect = 6.430e-21 Identity = 76/192 (39.58%), Postives = 103/192 (53.65%), Query Frame = 1
Query: 421 ACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGG--DSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEEL 990
A R L A + +P A +P+G P KSWHVER V E V+E L AGPRLVGLVG SGAGKTT AA +V++ +R+ F DG++WL+V A +R+ ++M +LA MV + I + +P + GG D+Y +ME+ G G +CL VADNVWE V+ L
Sbjct: 75 AARKELLANQEIIIDRLPKPPIKKAYVPQGTPTRKSWHVERH-VTETVVEALTGE---AGPRLVGLVGDSGAGKTTAAAELVRSNVVRESFSDGIVWLTVNYGANKRLPSLMLQLARMVQEDIGGRVGGHPNES---GGNADAYIKQRMEN------GHGGKGL----------KCLAVADNVWEKEVVSML 243
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE) HSP 1 Score: 101 bits (252), Expect = 4.870e-20 Identity = 67/172 (38.95%), Postives = 94/172 (54.65%), Query Frame = 1
Query: 499 IPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAG-------PRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
+P G P WHVER KEAV E G +G PR+VG+ GP G+GK+T+A+MV+ D+R++F G+LWL VGE A + +M LA MV++ + K R P R+ G +D GAGY+ E++ + R LVVAD++ E V+EELK
Sbjct: 124 VPSGAPRIHEWHVER---KEAVAEACDSLGIGSGKSEFFEMPRVVGMSGPGGSGKSTLASMVIARQDVREYFYKGVLWLPVGEGAKHCLPELMLHLARMVYETVLRKACRPP--RLAGVGVDPED--------------GAGYIHEVVNESNHRFLVVADDIREPEVLEELK 276 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig37042.9775.1 >prot_H-paniculata_contig37042.9775.1 ID=prot_H-paniculata_contig37042.9775.1|Name=mRNA_H-paniculata_contig37042.9775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=328bp MPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQETback to top mRNA from alignment at H-paniculata_contig37042:4..1308- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig37042.9775.1 ID=mRNA_H-paniculata_contig37042.9775.1|Name=mRNA_H-paniculata_contig37042.9775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-paniculata_contig37042:4..1308- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig37042:4..1308- >mRNA_H-paniculata_contig37042.9775.1 ID=mRNA_H-paniculata_contig37042.9775.1|Name=mRNA_H-paniculata_contig37042.9775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at H-paniculata_contig37042:4..1308- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |