mRNA_H-paniculata_contig37042.9775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37042.9775.1
Unique NamemRNA_H-paniculata_contig37042.9775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 2.870e-35
Identity = 118/351 (33.62%), Postives = 167/351 (47.58%), Query Frame = 1
Query:    1 GEEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQETSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHIVSDNNMVGINQWGSKCPEHLACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVV-----------------KNLD-MRQHFCDGMLWLSVGEN--AVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
            G E+P+VG   KTL  IR   +   SN E+L AL  RC ++   V+ KW Q +S       +  C+   E   ARC+ RG   R    +  ND   ++ TLN  ++ L  D  LA            GI    +K  +  A    + A  +  P  VPV     A +P G P   SWHV R  V +AV EHL+   +   P++VGLVG SG+GKTT AA +V                 + L+ +R+HF DG++WL VG    + +RV A+MS+LA  V++ +       P      GG ++    + D         G G  A       KRCLVVAD+VWE+ ++EEL+
Sbjct:   77 GGEVPVVGAVLKTLKAIRLRFEAVQSNTERLKALEERCTYVTACVIVKWRQTSSSEMNVAPLESCVNAAEDFIARCSRRGLCGRCTKASSDND---ELLTLNSRVDSLTGDLGLA------------GIASLDAKVDDLKAMLAEVIA-QNTMPASVPV-----AAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQT---PQVVGLVGRSGSGKTTCAASIVGESTGRRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPTGGGSAF----ISDFV------RGKGSAAG-----RKRCLVVADDVWEVDILEELR 388          
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: D7G5K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K4_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 6.270e-33
Identity = 95/268 (35.45%), Postives = 142/268 (52.99%), Query Frame = 1
Query:    1 GEEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQETSPP--FKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHI---VSDNNMVGINQWGSKCPEHLACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQI 789
            G E+P+VG   KTL  +R  V+T   N+++L AL  RC ++   V+ K+ Q   P        +  C+   E+ A RC  R   +  +      D   ++ TLN  I++LV D  LA I  +   V+D   + + Q  S   +  A +  L A   +    +P      A+IP+G P  KSWHVER+ V + V+E L      AGP LVGLVG SGAGKTT A+ +V +  +R+ F DG++WL+V   A +R+ ++M +LA MV + I
Sbjct:   35 GGELPVVGTVLKTLTAMRETVETVQQNRDELAALEKRCTYMTASVIVKFRQIPQPGSGLDVTPLKDCVVVAEKFAERCKKRRMRWEIVKAFSVKD---ELATLNARIDRLVGDLGLAGIATVLGEVADLKGMMLEQMVS---DQAAAQKELLANQEIVIDRLPKPPTKKADIPQGTPMRKSWHVERRHVMDTVVEALTGE---AGPHLVGLVGDSGAGKTTAASELVGSNVVRESFSDGIVWLAVNYGANKRLPSLMLQLARMVHEDI 293          
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.790e-31
Identity = 109/343 (31.78%), Postives = 155/343 (45.19%), Query Frame = 1
Query:    1 GEEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQE-TSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCA-HTNDIASQIKTLNDTINQLVMDNALARIIHIVSD-----------NNMVGINQWGSKCPEHLACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEEL 990
            GEE+PL+    +TL  IR  V+T   N E L  L  RC ++    + K     T     P  +  C+  VE+   R   RG + R +       DI    + L D    L +    +   ++++D              +G  Q G+    H     +   IL      +P   A +AN+P+G P  KSWHVER+ V E V + L   G   GP LVGLVG SGAGKTT A+ +V ++ +R+ F DG++WL V E     +  +M +LA MV++ I     R P      G D       + V + H    G G           +CLVVADNVWE  V+ +L
Sbjct:   34 GEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTELDVAP--LEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGN----HEELLAKTETILR----QLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADG---GPHLVGLVGDSGAGKTTAASAIVSSIVVRETFSDGIVWLPVNEGVHDNLPCLMLQLAQMVFEDIGGSVGRRP-----SGSDDGLAYVKQQVENGH---GGKGL----------KCLVVADNVWESDVVSQL 345          
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KXU5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU5_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 4.640e-31
Identity = 109/344 (31.69%), Postives = 162/344 (47.09%), Query Frame = 1
Query:    4 EEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQ-ETSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHIVSDNNMVGINQWGSKCPEHLACRL------RLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLA-------PSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
            +E P VG ACK  L    LV TA SNK +L  L    D +L R V +  + E     +   +   +   E +A  CN +G L R         I ++I+++   +            +H  + NN+V  ++   K  +    RL       L+A++  KP  V        NIP G P+ + W+VER  V+  +  HL        PS     PR+VGL GP GAGK+T+A+MVV  +D++  F   +LWLSVG+ A  R+  +M +LA  V + +  K  R P +  V  G + +D              GA Y+ E   K + R LVVAD+VW+  V+ EL+
Sbjct:   27 QETPAVGIACKAYLAFEDLVQTATSNKLELSVLGELIDLVLQRYVKRCAEREQGVRQELLSLENHIKSAESVAGLCNGKG-LKRLKQLTLCRRICNEIESVRKNV------------LHFCTINNLVLTSELSFKLDD--VARLLEAQDQTLKAVME-KPGRV--------NIPSGAPSIRDWYVERVKVEAQICHHLGIGTSNGIPSFPEEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPTLMFELAKTVRETVLQKMARRPREATV--GINSED--------------GAAYIREEAGKGDTRFLVVADDVWDAEVLAELR 330          
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 4.790e-31
Identity = 102/338 (30.18%), Postives = 157/338 (46.45%), Query Frame = 1
Query:   10 MPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQETSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHIVSDNNMVGINQWGSKCP------EHLACRLRLR-----AILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEEL 990
            +PL+    KTL  +               AL  RC ++   V+ +  ++ S   K   +++C+  V     RC+ RG L R +      +  + +K                R+  +  D  + GI   G K        EH+  +  L      A   +    V +    +A +P G PA KSWHVER+ V  AV + L   G   GPRLVGLVG SG+GKTT AA +V++ ++R+ F DG++WLSV + A +R+ A+M  LA +V++ I     R P               ++D A+  + R  +G+  + ++     CLVVADNVWE  VI +L
Sbjct:   23 LPLIEPVLKTLKAVXXXXXXXXXXXXXXAALYQRCTYITGCVIVR-CRKGSSGLKATPLMECVNAVGAFVERCSRRGMLSRVLKATDDKEEIAGLKQ---------------RLEDLEGDLRLAGIATVGGKVEDLKALLEHVDTKQALSHSQTLANHDIMFARVGISPETLATVPAGTPARKSWHVERRHVMRAVCDALPGEG---GPRLVGLVGDSGSGKTTAAAEIVRSTEVREAFSDGIVWLSVNDGATERLRALMMHLARVVFEDIGGSVGRRP-------------AGLDDGAAYTRQRMQSGHGGKGLK-----CLVVADNVWEEAVISKL 323          
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 7.470e-28
Identity = 102/356 (28.65%), Postives = 155/356 (43.54%), Query Frame = 1
Query:    1 GEEMPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQETSPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLNDTINQLVMDNALARIIHIVSDNNMVGINQWGSKCPEHLACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKN-------LD----------------MRQHFCDGMLWLSVG--ENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
            G   P+V   C  LLK +G+VD A  NKE+L  LC RCD +  +V++K     +       +  C+  ++ +A R +++G L R        D    I+ L   I  +V    LA +++I+                       RL  +  +     P     +A +P G+PA ++WH  R  V++ V + L  SG    P +  L G SGAGK+T AA +V+N       LD                +R  F DG+++L VG  E A  R+  +M KLA  + + +  KT   P                           G  YV ++M + +KRCLVVAD+VWE  V+ +LK
Sbjct:  112 GAATPVVAPLCVALLKAKGIVDGASRNKEELGELCERCDLITVQVIDKAKASNTSTIDVSPLQGCVDKLDEVAKRYHDQGCLARLAQFRRDGD---DIQRLRARIEAIVPIMGLAGVVNIMD----------------------RLEDVRQILARLQPRPRPKLAPVPPGLPAGEAWHAVRDHVEDEVYKIL--SGDE--PAVAALTGKSGAGKSTAAADMVRNRKVDIRGLDDETEDQARTRMDRLERVRARFSDGVVYLRVGKGEGAADRLPDLMRKLAKALHEDVLKKTAGAP----------------------EAGEKGESYVKKMMTRTKKRCLVVADDVWEPPVVAKLK 416          
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.210e-25
Identity = 69/173 (39.88%), Postives = 102/173 (58.96%), Query Frame = 1
Query:  484 AAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRK----HEKRCLVVADNVWELGVIEEL 990
            A +  +P+G PA KSW+V+R+ V + V E LA  G   GPRLVGLVG SG+GKTT+A+  V++ ++++ F DG+ WLSV + A +R+S++M +LA +V++ I     R P         S  DC              A Y+ + M+K     + +CLVVADNVWE  V+ +L
Sbjct:   31 AKLTKVPKGTPARKSWYVKRRHVMDTVFEGLASDG---GPRLVGLVGGSGSGKTTVASESVRSTEVQEAFSDGIAWLSVNDGAKERLSSLMLQLARVVYEDIGCSVGRRPT--------SSDDC--------------AAYIRQRMKKGTGGKKLKCLVVADNVWEKEVVSKL 178          
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: D7G5Y4_ECTSI (NB-ARC and TPR containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.540e-22
Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = 1
Query:  496 NIPRGIPATKSWHVERQAVKEAVLEHLA-------PSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
            NIP G P+ + W+VER  V   +  HL        PS     PR+VGL GP GAGK+T+A+MVV  +D++  F   +LWLSVG+ A  R+ A+M +LA  V + +  K  R P +  V  G + +D              GA Y+ E   K + R LVVAD+VW+  V+ EL+
Sbjct:    8 NIPSGAPSIRDWYVERVGVATQICHHLGIGTSNGIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQVDVQAFFRGRVLWLSVGKGAKDRLPALMFELANRVRETVLQKMARRPREATV--GINSED--------------GAAYIREEAGKGDTRFLVVADDVWDAEVLGELR 164          
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.430e-21
Identity = 76/192 (39.58%), Postives = 103/192 (53.65%), Query Frame = 1
Query:  421 ACRLRLRAILSVKPTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGG--DSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEEL 990
            A R  L A   +    +P      A +P+G P  KSWHVER  V E V+E L      AGPRLVGLVG SGAGKTT AA +V++  +R+ F DG++WL+V   A +R+ ++M +LA MV + I  +   +P +    GG  D+Y   +ME+         G G           +CL VADNVWE  V+  L
Sbjct:   75 AARKELLANQEIIIDRLPKPPIKKAYVPQGTPTRKSWHVERH-VTETVVEALTGE---AGPRLVGLVGDSGAGKTTAAAELVRSNVVRESFSDGIVWLTVNYGANKRLPSLMLQLARMVQEDIGGRVGGHPNES---GGNADAYIKQRMEN------GHGGKGL----------KCLAVADNVWEKEVVSML 243          
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.870e-20
Identity = 67/172 (38.95%), Postives = 94/172 (54.65%), Query Frame = 1
Query:  499 IPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAG-------PRLVGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMSKLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELK 993
            +P G P    WHVER   KEAV E     G  +G       PR+VG+ GP G+GK+T+A+MV+   D+R++F  G+LWL VGE A   +  +M  LA MV++ +  K  R P  R+   G   +D              GAGY+ E++ +   R LVVAD++ E  V+EELK
Sbjct:  124 VPSGAPRIHEWHVER---KEAVAEACDSLGIGSGKSEFFEMPRVVGMSGPGGSGKSTLASMVIARQDVREYFYKGVLWLPVGEGAKHCLPELMLHLARMVYETVLRKACRPP--RLAGVGVDPED--------------GAGYIHEVVNESNHRFLVVADDIREPEVLEELK 276          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37042.9775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LFN6_ECTSI2.870e-3533.62NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G5K4_ECTSI6.270e-3335.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRK8_9PHAE3.790e-3131.78NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KXU5_9PHAE4.640e-3131.69NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KLK9_9PHAE4.790e-3130.18NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KE50_9PHAE7.470e-2828.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYW3_9PHAE1.210e-2539.88NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7G5Y4_ECTSI2.540e-2238.73NB-ARC and TPR containing protein n=1 Tax=Ectocarp... [more]
A0A6H5J759_9PHAE6.430e-2139.58NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KZP3_9PHAE4.870e-2038.95NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37042contigH-paniculata_contig37042:4..1308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue6.8e-35
Seed eggNOG ortholog2880.D7FZZ7
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons2
Model size993
Cds size984
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37042.9775.1prot_H-paniculata_contig37042.9775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37042 4..1299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.5933645-CDS-H-paniculata_contig37042:3..5401622930142.5933645-CDS-H-paniculata_contig37042:3..540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37042 4..540 -
1691481164.1609826-CDS-H-paniculata_contig37042:3..5401691481164.1609826-CDS-H-paniculata_contig37042:3..540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37042 4..540 -
1622930142.6133897-CDS-H-paniculata_contig37042:852..12991622930142.6133897-CDS-H-paniculata_contig37042:852..1299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37042 853..1299 -
1691481164.1777267-CDS-H-paniculata_contig37042:852..12991691481164.1777267-CDS-H-paniculata_contig37042:852..1299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37042 853..1299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.6298778-UTR-H-paniculata_contig37042:1299..13081622930142.6298778-UTR-H-paniculata_contig37042:1299..1308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig37042 1300..1308 -
1691481164.1882544-UTR-H-paniculata_contig37042:1299..13081691481164.1882544-UTR-H-paniculata_contig37042:1299..1308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig37042 1300..1308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37042.9775.1

>prot_H-paniculata_contig37042.9775.1 ID=prot_H-paniculata_contig37042.9775.1|Name=mRNA_H-paniculata_contig37042.9775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=328bp
MPLVGGACKTLLKIRGLVDTAGSNKEQLVALCHRCDFLLTRVVNKWMQET
SPPFKPHDIVKCLGDVERLAARCNNRGFLFRFMSCAHTNDIASQIKTLND
TINQLVMDNALARIIHIVSDNNMVGINQWGSKCPEHLACRLRLRAILSVK
PTHVPVHLAAMANIPRGIPATKSWHVERQAVKEAVLEHLAPSGSVAGPRL
VGLVGPSGAGKTTIAAMVVKNLDMRQHFCDGMLWLSVGENAVQRVSAVMS
KLATMVWDQIFSKTERNPVQRVVLGGDSYQDCKMEDVASEHQARNGAGYV
AELMRKHEKRCLVVADNVWELGVIEELK
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mRNA from alignment at H-paniculata_contig37042:4..1308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37042.9775.1 ID=mRNA_H-paniculata_contig37042.9775.1|Name=mRNA_H-paniculata_contig37042.9775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-paniculata_contig37042:4..1308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAGGAGATGCCGCTCGTTGGTGGGGCTTGCAAAACACTGTTGAAAAT CCGAGGCCTGGTTGACACAGCTGGGTCGAACAAGGAACAGCTCGTGGCCC TTTGTCATCGCTGTGATTTCTTATTGACACGCGTTGTGAATAAATGGATG CAGGAAACATCTCCGCCGTTTAAACCGCACGATATCGTGAAGTGCTTGGG AGACGTCGAACGCCTGGCTGCGAGGTGCAACAATCGGGGTTTCCTGTTTC GGTTCATGTCCTGCGCCCACACTAATGATATTGCCAGTCAGATAAAGACC CTTAATGACACCATCAATCAACTTGTGATGGACAACGCTCTGGCACGCAT CATCCACATTGTGAGTGACAATAATATGGTGGGCATCAACCAATGGGGGA GTAAATGCCCCGAACACCTTGCGTGTCGCCTCCGCTTGAGAGCGATCCTT TCTGTTGTCTCAAATTCTTCAAAGATAACCATTATCAGGTTGTTTTAGTT CTGTTGGCAAATGCTTCTACAGGCCATGTTTTTTTCCGTGGACATGCATT TTGCGTCAACCTAAATTCGGCGAGTTTGATGCTGATATTGTGCTCCGTGT ATATTGCTTGACTACAACCATCAACTCTAGTAGGGGTGATTTTTATGGGT GTCGAGCACGTGAATATCATATCAGCAGGCCTCTCTTACAGTGCAGCTTT CGCCAATTTTAGAGTATGAACCTTTGGCGTTTTGTGTGCTCCCCAACGTT CTTGACCAATACCAGCAGAAACCAACACATGTCCCTGTTCATTTGGCGGC GATGGCAAATATTCCGCGGGGAATCCCTGCCACCAAGAGTTGGCACGTCG AGAGGCAGGCGGTAAAAGAGGCGGTTCTCGAACATCTTGCACCCTCCGGC TCGGTCGCTGGGCCTAGACTAGTAGGACTGGTGGGTCCAAGCGGGGCGGG TAAAACCACAATCGCAGCGATGGTCGTCAAGAACCTGGATATGCGGCAAC ATTTCTGTGATGGCATGCTCTGGCTCTCGGTGGGTGAGAATGCTGTGCAA CGCGTCAGCGCTGTCATGTCCAAGCTAGCTACCATGGTATGGGATCAGAT TTTCAGCAAAACAGAGCGTAATCCTGTTCAACGCGTCGTCCTCGGCGGTG ATAGTTACCAAGACTGCAAGATGGAGGACGTAGCATCCGAACACCAGGCA AGAAATGGAGCGGGCTATGTCGCCGAACTTATGAGGAAGCACGAAAAGCG CTGCCTCGTTGTGGCGGACAATGTGTGGGAATTAGGGGTTATCGAGGAAT TGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig37042:4..1308-

>mRNA_H-paniculata_contig37042.9775.1 ID=mRNA_H-paniculata_contig37042.9775.1|Name=mRNA_H-paniculata_contig37042.9775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at H-paniculata_contig37042:4..1308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCTCGTTGGTGGGGCTTGCAAAACACTGTTGAAAATCCGAGGCCT
GGTTGACACAGCTGGGTCGAACAAGGAACAGCTCGTGGCCCTTTGTCATC
GCTGTGATTTCTTATTGACACGCGTTGTGAATAAATGGATGCAGGAAACA
TCTCCGCCGTTTAAACCGCACGATATCGTGAAGTGCTTGGGAGACGTCGA
ACGCCTGGCTGCGAGGTGCAACAATCGGGGTTTCCTGTTTCGGTTCATGT
CCTGCGCCCACACTAATGATATTGCCAGTCAGATAAAGACCCTTAATGAC
ACCATCAATCAACTTGTGATGGACAACGCTCTGGCACGCATCATCCACAT
TGTGAGTGACAATAATATGGTGGGCATCAACCAATGGGGGAGTAAATGCC
CCGAACACCTTGCGTGTCGCCTCCGCTTGAGAGCGATCCTTTCTGTTATG
CCGCTCGTTGGTGGGGCTTGCAAAACACTGTTGAAAATCCGAGGCCTGGT
TGACACAGCTGGGTCGAACAAGGAACAGCTCGTGGCCCTTTGTCATCGCT
GTGATTTCTTATTGACACGCGTTGTGAATAAATGGATGCAGGAAACATCT
CCGCCGTTTAAACCGCACGATATCGTGAAGTGCTTGGGAGACGTCGAACG
CCTGGCTGCGAGGTGCAACAATCGGGGTTTCCTGTTTCGGTTCATGTCCT
GCGCCCACACTAATGATATTGCCAGTCAGATAAAGACCCTTAATGACACC
ATCAATCAACTTGTGATGGACAACGCTCTGGCACGCATCATCCACATTGT
GAGTGACAATAATATGGTGGGCATCAACCAATGGGGGAGTAAATGCCCCG
AACACCTTGCGTGTCGCCTCCGCTTGAGAGCGATCCTTTCTGTTAAACCA
ACACATGTCCCTGTTCATTTGGCGGCGATGGCAAATATTCCGCGGGGAAT
CCCTGCCACCAAGAGTTGGCACGTCGAGAGGCAGGCGGTAAAAGAGGCGG
TTCTCGAACATCTTGCACCCTCCGGCTCGGTCGCTGGGCCTAGACTAGTA
GGACTGGTGGGTCCAAGCGGGGCGGGTAAAACCACAATCGCAGCGATGGT
CGTCAAGAACCTGGATATGCGGCAACATTTCTGTGATGGCATGCTCTGGC
TCTCGGTGGGTGAGAATGCTGTGCAACGCGTCAGCGCTGTCATGTCCAAG
CTAGCTACCATGGTATGGGATCAGATTTTCAGCAAAACAGAGCGTAATCC
TGTTCAACGCGTCGTCCTCGGCGGTGATAGTTACCAAGACTGCAAGATGG
AGGACGTAGCATCCGAACACCAGGCAAGAAATGGAGCGGGCTATGTCGCC
GAACTTATGAGGAAGCACGAAAAGCGCTGCCTCGTTGTGGCGGACAATGT
GTGGGAATTAGGGGTTATCGAGGAATTGAAGAAACCAACACATGTCCCTG
TTCATTTGGCGGCGATGGCAAATATTCCGCGGGGAATCCCTGCCACCAAG
AGTTGGCACGTCGAGAGGCAGGCGGTAAAAGAGGCGGTTCTCGAACATCT
TGCACCCTCCGGCTCGGTCGCTGGGCCTAGACTAGTAGGACTGGTGGGTC
CAAGCGGGGCGGGTAAAACCACAATCGCAGCGATGGTCGTCAAGAACCTG
GATATGCGGCAACATTTCTGTGATGGCATGCTCTGGCTCTCGGTGGGTGA
GAATGCTGTGCAACGCGTCAGCGCTGTCATGTCCAAGCTAGCTACCATGG
TATGGGATCAGATTTTCAGCAAAACAGAGCGTAATCCTGTTCAACGCGTC
GTCCTCGGCGGTGATAGTTACCAAGACTGCAAGATGGAGGACGTAGCATC
CGAACACCAGGCAAGAAATGGAGCGGGCTATGTCGCCGAACTTATGAGGA
AGCACGAAAAGCGCTGCCTCGTTGTGGCGGACAATGTGTGGGAATTAGGG
GTTATCGAGGAATTGAAG
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