mRNA_H-paniculata_contig36985.9759.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: D7FTL8_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL8_ECTSI) HSP 1 Score: 211 bits (538), Expect = 2.200e-61 Identity = 102/113 (90.27%), Postives = 109/113 (96.46%), Query Frame = 1
Query: 1 QVKDGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
++KDG+VL+VSARSARGMAHQDLTKDWGVA+CLLDG+KGNDLMGLPL APNA Y+TVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGL D MVMPFEV
Sbjct: 360 EMKDGSVLVVSARSARGMAHQDLTKDWGVAVCLLDGIKGNDLMGLPLRAPNATYDTVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLEDHMVMPFEV 472
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: A0A835YRC2_9STRA (Leucine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC2_9STRA) HSP 1 Score: 171 bits (432), Expect = 5.020e-47 Identity = 81/110 (73.64%), Postives = 93/110 (84.55%), Query Frame = 1
Query: 10 DGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
DG+V+I+SAR A+G+AHQ K+WG CL+ L G +L+GLPLSAPNA Y+ VY LPLLTISMGKGTGVVTSVPSDAPDDYAAL ELK+KP FR KFGLTDEMVMPF+V
Sbjct: 316 DGSVMIMSARGAKGLAHQGFAKEWGKVECLIPDLTGQELIGLPLSAPNATYDVVYTLPLLTISMGKGTGVVTSVPSDAPDDYAALKELKEKPQFREKFGLTDEMVMPFDV 425
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: A0A7S2UVZ9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVZ9_9STRA) HSP 1 Score: 164 bits (414), Expect = 4.880e-46 Identity = 80/113 (70.80%), Postives = 96/113 (84.96%), Query Frame = 1
Query: 1 QVKDGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
++ G V +++ R+ARGMAHQDL ++WG CLL L G DL+GLPL+APNA+YE VY LPLL+ISMGKGTGVVTSVPSDAPDD+AAL ELK+KPAFR KFGLTD+MV+PFEV
Sbjct: 163 EMGSGEVFVMTERAARGMAHQDLMQEWGKVKCLLR-LTGWDLLGLPLNAPNAQYEVVYTLPLLSISMGKGTGVVTSVPSDAPDDFAALRELKEKPAFREKFGLTDDMVVPFEV 274
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: A0A397FKC2_9STRA (Leucine--tRNA ligase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FKC2_9STRA) HSP 1 Score: 153 bits (386), Expect = 7.230e-42 Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 1 QVKDGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
++ + V ++S RSA +AHQD ++ WG CLL+ LKG DL+GLPL AP A Y+TVY LPLLTISMGKGTGVVTSVPSDAPDDYAAL +LK KPA R K+ LTDEMV+PFEV
Sbjct: 326 RINETDVFVISRRSALNLAHQDFSRTWGQVECLLE-LKGWDLLGLPLLAPYAAYDTVYTLPLLTISMGKGTGVVTSVPSDAPDDYAALRDLKQKPAMREKYHLTDEMVLPFEV 437
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: A0A024U1C5_9STRA (Leucine--tRNA ligase n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024U1C5_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.330e-41 Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 1
Query: 1 QVKDGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
++ + V ++S RSA +AHQD ++ WG CLL+ LKG DL+GLPL APNA Y+TVY LPLLTISMGKGTGVVTSVPSDAPDD+AAL +LK KPA R K+ LTDEMV+PFEV
Sbjct: 325 RINETDVFLISRRSALNLAHQDYSRTWGQVECLLE-LKGWDLLGLPLRAPNAVYDTVYTLPLLTISMGKGTGVVTSVPSDAPDDFAALRDLKQKPAMREKYNLTDEMVLPFEV 436
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: A0A8K1FLA1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLA1_PYTOL) HSP 1 Score: 154 bits (389), Expect = 3.180e-41 Identity = 75/107 (70.09%), Postives = 90/107 (84.11%), Query Frame = 1
Query: 19 VLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
V I+S R+A+ +AHQD +++WG CLL+ LKG DL+GLPLSAPNAKYETVY LPLLTISMGKGTGVVTSVPSDAPDDYAAL +LK K AFR K+ + D MV+P++V
Sbjct: 335 VFIMSRRAAKNLAHQDRSREWGQEECLLE-LKGWDLLGLPLSAPNAKYETVYTLPLLTISMGKGTGVVTSVPSDAPDDYAALRDLKQKAAFREKYNIADHMVLPYDV 440
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: A0A397E5S3_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E5S3_9STRA) HSP 1 Score: 153 bits (386), Expect = 5.660e-41 Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 1 QVKDGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
++ + V ++S RSA +AHQD ++ WG CLL+ LKG DL+GLPL AP A Y+TVY LPLLTISMGKGTGVVTSVPSDAPDDYAAL +LK KPA R K+ LTDEMV+PFEV
Sbjct: 53 RINETDVFVISRRSALNLAHQDFSRTWGQVECLLE-LKGWDLLGLPLLAPYAAYDTVYTLPLLTISMGKGTGVVTSVPSDAPDDYAALRDLKQKPAMREKYHLTDEMVLPFEV 164
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: A0A1V9Y5W7_9STRA (Leucine--tRNA ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5W7_9STRA) HSP 1 Score: 153 bits (386), Expect = 8.070e-41 Identity = 75/113 (66.37%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 1 QVKDGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
++ + V I+S R+AR +AHQ+ +++WGV CLL+ LKG DL+GLPLSAP A YETVY LPLLTISMGKGTGVVTSVPSD+PDDYAAL +LK K A R K+ LTD MV+P+EV
Sbjct: 327 RINETDVFIISRRAARNLAHQEYSREWGVEECLLE-LKGWDLLGLPLSAPKAAYETVYTLPLLTISMGKGTGVVTSVPSDSPDDYAALRDLKTKAAMREKYNLTDAMVLPYEV 438
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: A0A6G0XHL4_9STRA (Leucine--tRNA ligase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHL4_9STRA) HSP 1 Score: 151 bits (381), Expect = 3.810e-40 Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 1 QVKDGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
++ + V ++S RSA +A+QD ++ WG CLL+ LKG DL+GLPL APNA Y+TVY LPLLTISMGKGTGVVTSVPSDAPDDYAAL +LK K A R K+ LTDEMV+PFEV
Sbjct: 322 RINETDVFLISRRSALNLAYQDYSRKWGEVECLLE-LKGWDLLGLPLQAPNAVYDTVYTLPLLTISMGKGTGVVTSVPSDAPDDYAALRDLKQKAAMREKYNLTDEMVLPFEV 433
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Match: A0A7S3LYW7_9STRA (Leucine--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYW7_9STRA) HSP 1 Score: 150 bits (380), Expect = 5.190e-40 Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1
Query: 1 QVKDGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPNAKYETVYVLPLLTISMGKGTGVVTSVPSDAPDDYAALLELKDKPAFRAKFGLTDEMVMPFEV 339
+ K+G ++++S R+A G+AHQD +WG LC + L G DL+GLPL AP A YE +Y LPL+TISMGKGTGVVTSVPSDAPDD+ AL ELKDKP +R KFGLT EMV PFEV
Sbjct: 325 EFKNGEIMVMSERAALGLAHQDYALEWGKTLCHVK-LTGQDLLGLPLKAPLATYEVIYTLPLMTISMGKGTGVVTSVPSDAPDDFVALKELKDKPLWREKFGLTTEMVEPFEV 436 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig36985.9759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig36985.9759.1 >prot_H-paniculata_contig36985.9759.1 ID=prot_H-paniculata_contig36985.9759.1|Name=mRNA_H-paniculata_contig36985.9759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp QVKDGAVLIVSARSARGMAHQDLTKDWGVALCLLDGLKGNDLMGLPLSAPback to top mRNA from alignment at H-paniculata_contig36985:658..1456+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig36985.9759.1 ID=mRNA_H-paniculata_contig36985.9759.1|Name=mRNA_H-paniculata_contig36985.9759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=799bp|location=Sequence derived from alignment at H-paniculata_contig36985:658..1456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig36985:658..1456+ >mRNA_H-paniculata_contig36985.9759.1 ID=mRNA_H-paniculata_contig36985.9759.1|Name=mRNA_H-paniculata_contig36985.9759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig36985:658..1456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |