mRNA_H-paniculata_contig35620.9456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35620.9456.1
Unique NamemRNA_H-paniculata_contig35620.9456.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35620.9456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35620contigH-paniculata_contig35620:740..1686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size696
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35620.9456.1prot_H-paniculata_contig35620.9456.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35620 908..1440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.4306557-UTR-H-paniculata_contig35620:739..9071622930100.4306557-UTR-H-paniculata_contig35620:739..907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35620 740..907 -
1691481146.0672202-UTR-H-paniculata_contig35620:739..9071691481146.0672202-UTR-H-paniculata_contig35620:739..907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35620 740..907 -
1622930100.4873059-UTR-H-paniculata_contig35620:1440..16861622930100.4873059-UTR-H-paniculata_contig35620:1440..1686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35620 1441..1686 -
1691481146.090171-UTR-H-paniculata_contig35620:1440..16861691481146.090171-UTR-H-paniculata_contig35620:1440..1686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35620 1441..1686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.4549503-CDS-H-paniculata_contig35620:907..11651622930100.4549503-CDS-H-paniculata_contig35620:907..1165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35620 908..1165 -
1691481146.07504-CDS-H-paniculata_contig35620:907..11651691481146.07504-CDS-H-paniculata_contig35620:907..1165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35620 908..1165 -
1622930100.470828-CDS-H-paniculata_contig35620:1416..14401622930100.470828-CDS-H-paniculata_contig35620:1416..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35620 1417..1440 -
1691481146.0827699-CDS-H-paniculata_contig35620:1416..14401691481146.0827699-CDS-H-paniculata_contig35620:1416..1440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35620 1417..1440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35620.9456.1

>prot_H-paniculata_contig35620.9456.1 ID=prot_H-paniculata_contig35620.9456.1|Name=mRNA_H-paniculata_contig35620.9456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MLPNCMPSGEDYSDPRLFATSRFLPQWAFATYKGILALYFFFWCVTWPTD
DGVKIYIFVTYWTWYVAALCKYYKGDASYILLCCVVAIPLQTM*
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mRNA from alignment at H-paniculata_contig35620:740..1686-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35620.9456.1 ID=mRNA_H-paniculata_contig35620.9456.1|Name=mRNA_H-paniculata_contig35620.9456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=947bp|location=Sequence derived from alignment at H-paniculata_contig35620:740..1686- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTAGTCATGACCATCAGGTGAAACAAACTGGGCAAAGTGCAGTGAGTAT
CACGGCACGGTACAGCACAAATAATTCTGAAAAATCACTTGTAGGATAAC
GGATACATCCAGAGGACTGAAGAACCTCGGTTTTCTTGCAGCATCTCTCC
CACACCCCCTGCTGAGCTGGTCGGCCTGGATCCGGAGAGCTCCTTTGGAA
ACGGTTGTCCGCAGTGCTCGTGGCCACAAGGCGACATTGGGCCATAATGT
TACCTAACTGCATGCCATCTGTGAGTTGATATGGGAGTTAGTGTGAATGT
TTGGTCATGTTGCCACAGGAATCTGAAACTTGACGTGTCCTACACACTTT
GGACGAAGCAACGTTAGGCGCACCTTCCAAACTAAAGGTGTCGACGAACT
GTGGATGAACCTCGCAGCACAAATATCATGCAAAGCTGTGCAATCTGCAG
TTGCGTTGTATGTCAGAGTGTGGGGGGCGCATGGTTGAGTTCTTTCCCCT
GTGTCTGTTTCTGCTGGTCAGGGTGAGGACTACAGTGATCCGAGGCTTTT
TGCTACATCGAGGTTTCTGCCACAGTGGGCATTTGCCACGTACAAAGGCA
TCCTCGCCCTCTATTTTTTTTTCTGGTGTGTCACTTGGCCAACTGATGAT
GGCGTCAAGATATACATATTCGTCACCTACTGGACTTGGTACGTCGCGGC
TCTCTGTAAGTATTACAAAGGGGACGCATCGTATATACTTCTGTGTTGCG
TCGTTGCAATACCTCTACAGACAATGTAGAGGGTCACCCAGTGGTTACCA
GGTGGCAGCTAGCTAGCTAGGTTCAGGTTCACGTAGAGTTGAACTGTGAA
GAGAGCTTGCATATGTAAAACCCTCAGCTCAGGCAGCTTCACTGGTTCTA
GTAGGACTTTGGGGTTTTGTTAGATGAATATTTTAGTGGAGGTCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig35620:740..1686-

>mRNA_H-paniculata_contig35620.9456.1 ID=mRNA_H-paniculata_contig35620.9456.1|Name=mRNA_H-paniculata_contig35620.9456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig35620:740..1686- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTACCTAACTGCATGCCATCTATGTTACCTAACTGCATGCCATCTGG
TGAGGACTACAGTGATCCGAGGCTTTTTGCTACATCGAGGTTTCTGCCAC
AGTGGGCATTTGCCACGTACAAAGGCATCCTCGCCCTCTATTTTTTTTTC
TGGTGTGTCACTTGGCCAACTGATGATGGCGTCAAGATATACATATTCGT
CACCTACTGGACTTGGTACGTCGCGGCTCTCTGTAAGTATTACAAAGGGG
ACGCATCGTATATACTTCTGTGTTGCGTCGTTGCAATACCTCTACAGACA
ATGTAGGGTGAGGACTACAGTGATCCGAGGCTTTTTGCTACATCGAGGTT
TCTGCCACAGTGGGCATTTGCCACGTACAAAGGCATCCTCGCCCTCTATT
TTTTTTTCTGGTGTGTCACTTGGCCAACTGATGATGGCGTCAAGATATAC
ATATTCGTCACCTACTGGACTTGGTACGTCGCGGCTCTCTGTAAGTATTA
CAAAGGGGACGCATCGTATATACTTCTGTGTTGCGTCGTTGCAATACCTC
TACAGACAATGTAG
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