mRNA_H-paniculata_contig35616.9454.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35616.9454.1
Unique NamemRNA_H-paniculata_contig35616.9454.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5KSN7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSN7_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 5.980e-7
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    7 LILCAPEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            + +C PEGCG  SG IV+LNK++YGLKQ  + W
Sbjct: 1314 VFMCLPEGCGRLSGMIVKLNKSLYGLKQVSRQW 1346
[Close]
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5JH88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH88_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 2.090e-6
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    4 YLILCAPEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            ++ +  PEGCG  SG IV+LNK++YGLKQA + W
Sbjct:   26 FVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQW 59
[Close]
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5KZH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.890e-6
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    7 LILCAPEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            +++  PEGCG  SG IV+LNK++YGLKQA + W
Sbjct:  260 VVMRLPEGCGRLSGMIVKLNKSLYGLKQASRQW 292
[Close]
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5JFP7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP7_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 2.910e-6
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   22 PEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            PEGCG  SG IV+LNK++YGLKQA + W
Sbjct:   59 PEGCGRLSGMIVKLNKSLYGLKQASRQW 86
[Close]
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 5.370e-6
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   22 PEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            PEGCG  SG IV+LNK++YGLKQA + W
Sbjct:   32 PEGCGRLSGMIVKLNKSLYGLKQASRQW 59
[Close]
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5L4L4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L4_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 5.370e-6
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   22 PEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            PEGCG  SG IV+LNK++YGLKQA + W
Sbjct:  983 PEGCGRLSGMIVKLNKSLYGLKQASRQW 1010
[Close]
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 5.370e-6
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   22 PEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            PEGCG  SG IV+LNK++YGLKQA + W
Sbjct:  753 PEGCGRLSGMIVKLNKSLYGLKQASRQW 780
[Close]
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 5.370e-6
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   22 PEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            PEGCG  SG IV+LNK++YGLKQA + W
Sbjct:  783 PEGCGRLSGMIVKLNKSLYGLKQASRQW 810
[Close]
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5K9I1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I1_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 5.380e-6
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   22 PEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            PEGCG  SG IV+LNK++YGLKQA + W
Sbjct:  588 PEGCGRLSGMIVKLNKSLYGLKQASRQW 615
[Close]
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 5.400e-6
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   22 PEGCGDKSGRIVRLNKTMYGLKQAGQMW 105
            PEGCG  SG IV+LNK++YGLKQA + W
Sbjct:  232 PEGCGRLSGMIVKLNKSLYGLKQASRQW 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35616.9454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSN7_9PHAE5.980e-757.58Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JH88_9PHAE2.090e-655.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZH3_9PHAE2.890e-657.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFP7_9PHAE2.910e-667.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBA7_9PHAE5.370e-667.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4L4_9PHAE5.370e-667.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2R1_9PHAE5.370e-667.86Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KKG5_9PHAE5.370e-667.86Integrase catalytic domain-containing protein n=6 ... [more]
A0A6H5K9I1_9PHAE5.380e-667.86Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KQB8_9PHAE5.400e-667.86Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35616contigH-paniculata_contig35616:2023..2130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.222302-CDS-H-paniculata_contig35616:2022..21301622930100.222302-CDS-H-paniculata_contig35616:2022..2130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35616 2023..2130 +
1691481145.9752648-CDS-H-paniculata_contig35616:2022..21301691481145.9752648-CDS-H-paniculata_contig35616:2022..2130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35616 2023..2130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35616.9454.1prot_H-paniculata_contig35616.9454.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35616 2023..2130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35616.9454.1

>prot_H-paniculata_contig35616.9454.1 ID=prot_H-paniculata_contig35616.9454.1|Name=mRNA_H-paniculata_contig35616.9454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=36bp
IYLILCAPEGCGDKSGRIVRLNKTMYGLKQAGQMW*
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mRNA from alignment at H-paniculata_contig35616:2023..2130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35616.9454.1 ID=mRNA_H-paniculata_contig35616.9454.1|Name=mRNA_H-paniculata_contig35616.9454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at H-paniculata_contig35616:2023..2130+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTATTTAATCCTATGCGCTCCAGAGGGTTGCGGGGACAAAAGCGGTAG
AATAGTAAGGCTGAATAAGACCATGTATGGTCTAAAGCAGGCTGGACAGA
TGTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig35616:2023..2130+

>mRNA_H-paniculata_contig35616.9454.1 ID=mRNA_H-paniculata_contig35616.9454.1|Name=mRNA_H-paniculata_contig35616.9454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at H-paniculata_contig35616:2023..2130+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTATTTAATCCTATGCGCTCCAGAGGGTTGCGGGGACAAAAGCGGTAG
AATAGTAAGGCTGAATAAGACCATGTATGGTCTAAAGCAGGCTGGACAGA
TGTGGTGAATTTATTTAATCCTATGCGCTCCAGAGGGTTGCGGGGACAAA
AGCGGTAGAATAGTAAGGCTGAATAAGACCATGTATGGTCTAAAGCAGGC
TGGACAGATGTGGTGA
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