mRNA_H-paniculata_contig35604.9453.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35604.9453.1
Unique NamemRNA_H-paniculata_contig35604.9453.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: B7ZGN7_9PHAE (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 9.930e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV 177
            VEEGSM TKYPIMIAGDNFGCGSSREHAPIA+GAAGARVVVAESYARIFFRNSIATGE+
Sbjct:  122 VEEGSMKTKYPIMIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGEL 180
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: A0A6H5JPR9_9PHAE (Aconitase_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPR9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.800e-26
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV 177
            VEEGSM T+YPI+IAGDNFGCGSSREHAPIA+GAAGARVVVAESYARIFFRNSIATGE+
Sbjct:  129 VEEGSMATRYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGEL 187
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: A0A251VAI3_HELAN (Putative aconitase/3-isopropylmalate dehydratase protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VAI3_HELAN)

HSP 1 Score: 99.8 bits (247), Expect = 4.990e-23
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV 177
            VE G   TKYPI+IAGDNFGCGSSREHAP+A+GAAGA  VVAESYARIFFRNS+ATGE+
Sbjct:  128 VETGEYRTKYPIIIAGDNFGCGSSREHAPVALGAAGAVAVVAESYARIFFRNSVATGEI 186
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: A0A1Y1I3V1_KLENI (3-isopropylmalate dehydratase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3V1_KLENI)

HSP 1 Score: 99.0 bits (245), Expect = 6.340e-23
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV 177
            +EEG M TKYPIMI G N+GCGSSREHAP+A+GAAG + VVAESYARIFFRNS+ATGE+
Sbjct:  112 IEEGEMKTKYPIMIGGKNYGCGSSREHAPVALGAAGLKAVVAESYARIFFRNSVATGEL 170
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: A0A7C3RHM1_9BACT (3-isopropylmalate dehydratase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C3RHM1_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 1.970e-22
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV 177
            VE G   T+YPI++AG NFGCGSSREHAPIA+GAAG RVVVAESYARIFFRN IATGE+
Sbjct:   58 VEPGKFDTEYPIIVAGKNFGCGSSREHAPIALGAAGCRVVVAESYARIFFRNCIATGEL 116
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: A0A176WCB1_MARPO (Aconitase_C domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WCB1_MARPO)

HSP 1 Score: 98.2 bits (243), Expect = 2.140e-22
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV 177
            +EEG M T+Y +MI GDNFGCGSSREHAP+A+GAAG + VVAESYARIFFRNS+ATGE+
Sbjct:  140 IEEGQMKTQYAVMIGGDNFGCGSSREHAPVALGAAGVKAVVAESYARIFFRNSVATGEL 198
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: I0ZAV3_COCSC (3-isopropylmalate dehydratase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0ZAV3_COCSC)

HSP 1 Score: 96.7 bits (239), Expect = 2.880e-22
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV 177
            VE+G M T+YPI+I G NFGCGSSREHAP+AMGAAGA+VVVAE+YARIFFRN ++TGE+
Sbjct:   88 VEDGRMKTEYPIVIGGQNFGCGSSREHAPVAMGAAGAKVVVAETYARIFFRNCVSTGEL 146
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: UPI00053C5E2F (3-isopropylmalate dehydratase small subunit 3-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C5E2F)

HSP 1 Score: 97.4 bits (241), Expect = 3.290e-22
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV 177
            VE G M TKY I+I GDNFGCGSSREHAP+A+GAAG + VVAESYARIFFRNS+ATGE+
Sbjct:  122 VEPGEMKTKYSIIIGGDNFGCGSSREHAPVALGAAGTKAVVAESYARIFFRNSVATGEI 180
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: A0A0K9P1Y1_ZOSMR (3-isopropylmalate dehydratase n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P1Y1_ZOSMR)

HSP 1 Score: 97.8 bits (242), Expect = 3.350e-22
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV 177
            V  GS  T YPI+IAGDNFGCGSSREHAP+A+GAAG R VVAESYARIFFRNS+ATGEV
Sbjct:  142 VNPGSSTTLYPIIIAGDNFGCGSSREHAPVALGAAGVRAVVAESYARIFFRNSVATGEV 200
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BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Match: UPI00034ADF01 (3-isopropylmalate dehydratase small subunit n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI00034ADF01)

HSP 1 Score: 95.5 bits (236), Expect = 3.830e-22
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 VEEGSMHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIATGEV---NSRKLVPGAFPK*MKVRMDFL 240
            V EG M TKYPI+IAG+NFGCGSSREHAPI++GA+G + VVA+SYARIFFRNS ATGE+    S + +   F    +V +DF+
Sbjct:   56 VAEGEMKTKYPIIIAGENFGCGSSREHAPISLGASGVKAVVAQSYARIFFRNSTATGELYPWESEERLCDRFKTGHEVTIDFV 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35604.9453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGN7_9PHAE9.930e-2894.923-isopropylmalate dehydratase (Fragment) n=1 Tax=L... [more]
A0A6H5JPR9_9PHAE1.800e-2691.53Aconitase_C domain-containing protein n=2 Tax=Ecto... [more]
A0A251VAI3_HELAN4.990e-2381.36Putative aconitase/3-isopropylmalate dehydratase p... [more]
A0A1Y1I3V1_KLENI6.340e-2377.973-isopropylmalate dehydratase n=1 Tax=Klebsormidiu... [more]
A0A7C3RHM1_9BACT1.970e-2279.663-isopropylmalate dehydratase n=1 Tax=Verrucomicro... [more]
A0A176WCB1_MARPO2.140e-2276.27Aconitase_C domain-containing protein n=2 Tax=Marc... [more]
I0ZAV3_COCSC2.880e-2276.273-isopropylmalate dehydratase n=1 Tax=Coccomyxa su... [more]
UPI00053C5E2F3.290e-2277.973-isopropylmalate dehydratase small subunit 3-like... [more]
A0A0K9P1Y1_ZOSMR3.350e-2281.363-isopropylmalate dehydratase n=1 Tax=Zostera mari... [more]
UPI00034ADF013.830e-2260.243-isopropylmalate dehydratase small subunit n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35604contigH-paniculata_contig35604:1291..2308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue5.3e-19
Seed eggNOG ortholog2880.D8LRK8
KEGG rclassRC00497,RC00976,RC00977,RC01041,RC01046,RC03072
KEGG koko:K01704,ko:K21359
KEGG ReactionR03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170
KEGG Pathwayko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230
KEGG ModuleM00432,M00535
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006551,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009657,GO:0009658,GO:0009987,GO:0016043,GO:0016053,GO:0016143,GO:0016144,GO:0016829,GO:0016835,GO:0016836,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0048229,GO:0048856,GO:0050896,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1901659
EggNOG free text desc.3-isopropylmalate dehydratase activity
EggNOG OGsCOG0065@1,KOG0454@2759
Ec32 ortholog description3-isopropylmalate dehydratase
Ec32 orthologEc-12_000170.1
EC4.2.1.170,4.2.1.33,4.2.1.35
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons2
Model size399
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35604.9453.1prot_H-paniculata_contig35604.9453.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35604 1306..2125 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.1301403-UTR-H-paniculata_contig35604:1290..13051622930100.1301403-UTR-H-paniculata_contig35604:1290..1305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35604 1291..1305 +
1691481145.9300234-UTR-H-paniculata_contig35604:1290..13051691481145.9300234-UTR-H-paniculata_contig35604:1290..1305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35604 1291..1305 +
1622930100.1681244-UTR-H-paniculata_contig35604:2125..23081622930100.1681244-UTR-H-paniculata_contig35604:2125..2308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35604 2126..2308 +
1691481145.9645061-UTR-H-paniculata_contig35604:2125..23081691481145.9645061-UTR-H-paniculata_contig35604:2125..2308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35604 2126..2308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930100.1425471-CDS-H-paniculata_contig35604:1305..13681622930100.1425471-CDS-H-paniculata_contig35604:1305..1368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35604 1306..1368 +
1691481145.9445632-CDS-H-paniculata_contig35604:1305..13681691481145.9445632-CDS-H-paniculata_contig35604:1305..1368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35604 1306..1368 +
1622930100.1550379-CDS-H-paniculata_contig35604:1987..21251622930100.1550379-CDS-H-paniculata_contig35604:1987..2125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35604 1988..2125 +
1691481145.9545093-CDS-H-paniculata_contig35604:1987..21251691481145.9545093-CDS-H-paniculata_contig35604:1987..2125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35604 1988..2125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35604.9453.1

>prot_H-paniculata_contig35604.9453.1 ID=prot_H-paniculata_contig35604.9453.1|Name=mRNA_H-paniculata_contig35604.9453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MHTKYPIMIAGDNFGCGSSREHAPIAMGAAGARVVVAESYARIFFRNSIA
TGEVNSRKLVPGAFPK*
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mRNA from alignment at H-paniculata_contig35604:1291..2308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35604.9453.1 ID=mRNA_H-paniculata_contig35604.9453.1|Name=mRNA_H-paniculata_contig35604.9453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1018bp|location=Sequence derived from alignment at H-paniculata_contig35604:1291..2308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAGGAAGGCTCTATGCACACCAAATATCCGATCATGATTGCTGGGGA
CAACTTCGGGTGTGGTTCGTCGCGAGAGGTGATTTCGCAGAACTAAAAAA
AATCGCATCCATCATTACACATACGGTCGTTCTTATATGTGGATTCAATG
CAGAACTTGAGGGTTTTTTTATTTGGCACCTGAAACACACATAAACGGCA
GTGAAGTAAAGCATCTTATGTCATGTTTTCCTCCTATTAAGGTGGCCTCA
CAACAATGGGGAAGGTATGAGGTATTTTATTTTGGTAATACACGCGTCGT
CGCGCGGTTCTCGAAGCAGCGTAATGAAGTTCGATTGGCGAAGAAGGGTG
CACACGAACGAGGTAGAGGAGGGAAGGGGGGCTGCGCTTGCGAACGAATT
GGCCCCGACTCTCTCGAGGTGCAGACGTTGACCTTCCTTGCGACCTTCTG
TCTTGCACCTTTTACTCCGTACTTGTCCATGGTGTATGTATGAACGCACT
CAATGTTGCTCTTGATGGAGGTAGCGTGCGTGTGGATGCCACAGTCATTT
TTTTGTTGGTCAAAATTGCTTGCTCATCTACTCGTCGGATATGTGCATGA
TTTGTTAGATAATCCTGGGTCCATTGCATTCTCATGATACGCATGGACAT
ACGCCTCCTCGTTTGTTTCTTTTTAATTGAAATTCCTTCGGCGACAGCAC
GCCCCGATTGCGATGGGAGCAGCGGGGGCTCGAGTAGTGGTGGCGGAATC
GTACGCACGAATTTTCTTCCGGAATTCCATCGCTACCGGCGAGGTGAATA
GCAGAAAATTAGTACCAGGAGCTTTTCCAAAGTAGATGAAAGTTCGTATG
GATTTCCTCTCTCGTATTCGTTGTTTTCATTTGAACATGGGGTGTGTTGG
TGCTGTTGATTCGGTGGTAGTGGTACCTCTCGAAACTCCAGCGCATCACG
GACCTACGCCCGAACGGGTAGGGTAGCTCGTGTACTGAGCATGACTGGAA
GTCTAGTCAGAGGTCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig35604:1291..2308+

>mRNA_H-paniculata_contig35604.9453.1 ID=mRNA_H-paniculata_contig35604.9453.1|Name=mRNA_H-paniculata_contig35604.9453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig35604:1291..2308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACACCAAATATCCGATCATGATTGCTGGGGACAACTTCGGGTGTGG
TTCGTCGCGAGAGATGCACACCAAATATCCGATCATGATTGCTGGGGACA
ACTTCGGGTGTGGTTCGTCGCGAGAGCACGCCCCGATTGCGATGGGAGCA
GCGGGGGCTCGAGTAGTGGTGGCGGAATCGTACGCACGAATTTTCTTCCG
GAATTCCATCGCTACCGGCGAGGTGAATAGCAGAAAATTAGTACCAGGAG
CTTTTCCAAAGTAGCACGCCCCGATTGCGATGGGAGCAGCGGGGGCTCGA
GTAGTGGTGGCGGAATCGTACGCACGAATTTTCTTCCGGAATTCCATCGC
TACCGGCGAGGTGAATAGCAGAAAATTAGTACCAGGAGCTTTTCCAAAGT
AG
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