mRNA_H-paniculata_contig3559.9452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3559.9452.1 vs. uniprot
Match: D8LR56_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR56_ECTSI) HSP 1 Score: 627 bits (1617), Expect = 8.060e-207 Identity = 464/946 (49.05%), Postives = 538/946 (56.87%), Query Frame = 1
Query: 355 MGNEQSGEQGHPVLETGLRLSTLCRYQAETGSGEGLTPFNWFNPSIDISGLVLKGAHRWGYVLSRAGGQRLFKDMRQRFFVLLDHYLCYFDTHAPEARMRGSIDLDKTLCLLKLLPRPPDRVVVADDGMTSVVVEDVVDVEERHHRVEVIRKSDGWSMIMCFRTANELQSWMKSIFDVQQRKSTFSPLLHGNSDTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGRGEHGNDNDWVHIGTHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDSGDGG-------CVPLSWADSKQSCEDRSSKMSARLAKASEKLAALPRGGRAPDCREGINSS------LDEYGAFTTAHASIYEGWTRGLQAHGWGRMIYVQGDYVEGWWEHDVLEGTGQHTSQEEGWTYRGEFVAGERHGPGRL---ETAEGDVWECEWRRGGVAEKLSGTHHKAGNGTLYQGGCGPSYGDRKAPCRVGHGKLKWRDGEQVETLFKDGRAVDGTKGVVRFRNGAIFFGQLRDAQPHGYGELYLSSVKPDGRNSASSNGSNRSLXXXXXXXXLPAGAPATAAARMTHSNVADLDETARDILWYKGPFRRGKPHGTGLVKYKDPSXXXXXXXXXXXXXXXESGVSAVSSXXXXXPV-PTAESVXXXXXXXVVRRLPPAGSIWGESKEEEEETVERETGIAGNGRVGRLGGEEEXXXXXXXXXXXXXXXXGDXXXXXXXXXLEGGEQRRHAT----------GGPLDGGEEKA-TAGTSRQTQRLPDSYGGGGGAGSGWR-----------GADMEYEAEFIDGVMIRHDPSHLRLAALRFGRAEIRCLETMLRREEEAMARLHSRNLCLLCNTEEMNALLMDCRHRVLCMGCAARADTCPVCRETIGKVVKTYTT 3075
MGNEQS E G + E GLRLSTLCRYQAE G +GL F+WF S D+SGLVL+GAHR+GYVLS GGQRLFKD RQRFFVLLDHYLC+FD+H+PEARM+GSIDLDKT C ++LLPRPP+ V D + V E HRVEV R++D +SM++CF +A L WMKS+FDVQQRK+TFSPL HG XXXX XXXXXXXXXXX GRG G XXXXXXXXXXXXXX XXXXXXXXXX ++ G GG PL S S+ RL KASE+LA LPRGGRA +SS LDEYGAFTTA ASIYEGWTRGLQ HGWGRM++ GD VEGWWEHDVL G+ ++TS++EGWTY G + GERHGPGRL GDVW+CEW RG VA GTH A +G LYQGGCGPS D P R G G+L+ RDG QV+T F+ GRAVDG KGVVRFRNGAIFFG+L++A+PHG ++ R ++A+L E ARD+LWYKG FR GKPHG+G++KYKDP+ E A + V + ES G+ XXXXXXXXXXXXXXXX XXXXXXXXX G +GGEEKA TA +R+ QR P GS GADMEYEAEF+DGVM+RHD HLRLAALRFGRAEIR LET+L++EE+AM+RL + LCLLCN EEMNALL+ CRH+VLCMGCA+RAD CPVC ETIGKVV+TY+T
Sbjct: 1 MGNEQSFE-GQAIPENGLRLSTLCRYQAEPGDEDGLA-FSWFQASTDVSGLVLRGAHRYGYVLSHVGGQRLFKDTRQRFFVLLDHYLCFFDSHSPEARMKGSIDLDKTHCHIELLPRPPETV----DTILQVGGGSGSSSEGDEHRVEVTRRTDEFSMVLCFSSATSLSDWMKSVFDVQQRKATFSPLRHGTGGXXXXXXISSEGXXXXXXXXXXXSDLPGSLPRAPTYINSRGNNSSGIASS------------GRGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXGTLGSPPXXXXXXXXXXGLRGVPSSWADDIDIRANEGGGGRTGEAEDAPPLRLRPRHMSTPTSSA---VRLGKASERLAGLPRGGRAAGNNASSSSSNVSGCSLDEYGAFTTAQASIYEGWTRGLQPHGWGRMVFANGDRVEGWWEHDVLHGSAEYTSRQEGWTYSGGYENGERHGPGRLVFSSAGGGDVWDCEWDRGVVARGSRGTHATA-DGELYQGGCGPSAADPAMPVRSGQGRLRRRDGGQVDTRFRAGRAVDGAKGVVRFRNGAIFFGELQEARPHG-----------------------------------------RSSRRKPRGSLAELHEMARDVLWYKGDFRLGKPHGSGVIKYKDPAPSLPADRGVGGAVAEEERGGAGAGPPGRPRVRASCESKDEYDGEGGEPEAKQGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALPEGGEEKAATALAARRGQRAPAD-------GSXXXXXXXXXXXXXSGADMEYEAEFVDGVMVRHDAEHLRLAALRFGRAEIRRLETLLKKEEDAMSRLRVKGLCLLCNVEEMNALLVACRHKVLCMGCASRADRCPVCNETIGKVVRTYST 876
BLAST of mRNA_H-paniculata_contig3559.9452.1 vs. uniprot
Match: A0A3S3PM93_9ACAR (E3 ubiquitin-protein ligase RNF34-like isoform X1 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PM93_9ACAR) HSP 1 Score: 55.8 bits (133), Expect = 9.490e-5 Identity = 19/48 (39.58%), Postives = 31/48 (64.58%), Query Frame = 1
Query: 2926 NLCLLCNTEEMNALLMDCRHRVLCMGCAARADTCPVCRETIGKVVKTY 3069
NLC +C E+N +L++C H + C C R CPVCR+ + ++V+T+
Sbjct: 180 NLCKICMDREINCVLLECGHMIACNDCGKRLSECPVCRQYVVRIVRTF 227 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3559.9452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3559.9452.1 >prot_H-paniculata_contig3559.9452.1 ID=prot_H-paniculata_contig3559.9452.1|Name=mRNA_H-paniculata_contig3559.9452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=908bp MGNEQSGEQGHPVLETGLRLSTLCRYQAETGSGEGLTPFNWFNPSIDISGback to top mRNA from alignment at H-paniculata_contig3559:1984..15253+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3559.9452.1 ID=mRNA_H-paniculata_contig3559.9452.1|Name=mRNA_H-paniculata_contig3559.9452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13270bp|location=Sequence derived from alignment at H-paniculata_contig3559:1984..15253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3559:1984..15253+ >mRNA_H-paniculata_contig3559.9452.1 ID=mRNA_H-paniculata_contig3559.9452.1|Name=mRNA_H-paniculata_contig3559.9452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5448bp|location=Sequence derived from alignment at H-paniculata_contig3559:1984..15253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |