mRNA_H-paniculata_contig35582.9451.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35582.9451.1
Unique NamemRNA_H-paniculata_contig35582.9451.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: D8LIJ0_ECTSI (MutL protein homolog 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ0_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 9.220e-27
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            +RS+FILFINDRLVES SIKK+VE+AYKDVLPKNTHPFVYL I MP+ HLDVNVHPTKREV+
Sbjct:  282 KRSDFILFINDRLVESPSIKKTVESAYKDVLPKNTHPFVYLGITMPSHHLDVNVHPTKREVH 343
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: A0A7S2RJJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJJ5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.080e-20
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            +R  FILFIN RLVES +IKKSVE+ YKD+LP  +HPFVYL++++P RH+DVNV PTKREV+
Sbjct:  286 KRPAFILFINHRLVESPAIKKSVESVYKDILPSGSHPFVYLSLELPGRHVDVNVSPTKREVH 347
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: A0A7R9U909_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U909_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.870e-20
Identity = 38/62 (61.29%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            ++S FILF+N+RLVES++IK++ +  Y ++LPK+ HPFVYLA+++P  HLDVNVHPTK+EVN
Sbjct:  307 KKSSFILFVNNRLVESAAIKRAFDEVYAEILPKHGHPFVYLALQIPPEHLDVNVHPTKKEVN 368
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: A0A7S1TUU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUU4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.010e-19
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:   13 FILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            FILF+N RLVES +I+++ + AY D+LP+  HPFVYLA+++P  HLDVNVHPTK+EV+
Sbjct:    2 FILFVNGRLVESPAIRRTFDTAYADLLPRGGHPFVYLALELPPAHLDVNVHPTKKEVH 59
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: A0A0N7L7Q2_PLAHL (Dna mismatch repair protein mlh1 isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7Q2_PLAHL)

HSP 1 Score: 89.0 bits (219), Expect = 3.430e-19
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            Q+S FILFINDRLVE  S+K++ E  Y   LPKNTHPF+YL++++P R++DVNVHPTKREV+
Sbjct:  285 QKSTFILFINDRLVECPSLKRACEYVYSLYLPKNTHPFLYLSMELPPRNIDVNVHPTKREVH 346
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: A0A836CHJ0_9STRA (DNA_mis_repair domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.410e-19
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            +R+ FILFIN RLV+S+SI++++E+ Y  VLPK TH F+YLA+ MP  HLDVNVHPTK+EV+
Sbjct:  288 KRAVFILFINHRLVDSTSIRRTLESVYSSVLPKGTHAFIYLALSMPAPHLDVNVHPTKQEVH 349
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: M4B4Q9_HYAAE (DNA_mis_repair domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4Q9_HYAAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.720e-19
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            ++S FILFINDRLVE  ++K++ E  Y   LPKNTHPF+YL+I++P R++DVNVHPTKREV+
Sbjct:  222 RKSNFILFINDRLVECLALKRACEYVYSLYLPKNTHPFIYLSIELPPRNVDVNVHPTKREVH 283
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: W2R9V5_PHYPN (DNA_mis_repair domain-containing protein n=18 Tax=Phytophthora TaxID=4783 RepID=W2R9V5_PHYPN)

HSP 1 Score: 87.8 bits (216), Expect = 8.730e-19
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            ++S FILFINDRLVE  S+K++ E  Y   LPKNTHPF+YL++ +P R++DVNVHPTKREV+
Sbjct:  269 KKSNFILFINDRLVECPSLKRACEYVYSLYLPKNTHPFIYLSMDLPPRNIDVNVHPTKREVH 330
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: A0A0W8D5T0_PHYNI (DNA mismatch repair protein Mlh1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D5T0_PHYNI)

HSP 1 Score: 87.8 bits (216), Expect = 8.730e-19
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            ++S FILFINDRLVE  S+K++ E  Y   LPKNTHPF+YL++ +P R++DVNVHPTKREV+
Sbjct:  275 KKSNFILFINDRLVECPSLKRACEYVYSLYLPKNTHPFIYLSMDLPPRNIDVNVHPTKREVH 336
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BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Match: A0A3R7J3A8_9STRA (DNA_mis_repair domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J3A8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.030e-18
Identity = 38/62 (61.29%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHLDVNVHPTKREVN 186
            ++S FILFINDRLVE  ++K++ E  Y   LPK+THPF+YL++++P R+LDVNVHPTKREV+
Sbjct:  268 RKSHFILFINDRLVECPALKRACEYVYSLYLPKSTHPFIYLSMELPPRNLDVNVHPTKREVH 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35582.9451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIJ0_ECTSI9.220e-2783.87MutL protein homolog 1 n=1 Tax=Ectocarpus siliculo... [more]
A0A7S2RJJ5_9STRA2.080e-2067.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U909_9STRA9.870e-2061.29Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TUU4_9STRA3.010e-1962.07Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0N7L7Q2_PLAHL3.430e-1964.52Dna mismatch repair protein mlh1 isoform x1 n=1 Ta... [more]
A0A836CHJ0_9STRA6.410e-1962.90DNA_mis_repair domain-containing protein n=1 Tax=T... [more]
M4B4Q9_HYAAE8.720e-1962.90DNA_mis_repair domain-containing protein n=1 Tax=H... [more]
W2R9V5_PHYPN8.730e-1962.90DNA_mis_repair domain-containing protein n=18 Tax=... [more]
A0A0W8D5T0_PHYNI8.730e-1962.90DNA mismatch repair protein Mlh1 n=2 Tax=Phytophth... [more]
A0A3R7J3A8_9STRA3.030e-1861.29DNA_mis_repair domain-containing protein n=3 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35582contigH-paniculata_contig35582:1930..2115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.8e-22
Seed eggNOG ortholog2880.D8LIJ0
Preferred nameMLH1
KEGG koko:K04371,ko:K08734
KEGG Pathwayko01521,ko01522,ko01524,ko03430,ko03460,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map03430,map03460,map04010,map04011,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00295,M00687
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000166,GO:0000226,GO:0000228,GO:0000280,GO:0000288,GO:0000289,GO:0000710,GO:0000712,GO:0000713,GO:0000726,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000956,GO:0001666,GO:0001673,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0002566,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005712,GO:0005713,GO:0005715,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007060,GO:0007127,GO:0007129,GO:0007131,GO:0007140,GO:0007143,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009056,GO:0009057,GO:0009555,GO:0009628,GO:0009636,GO:0009791,GO:0009845,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010154,GO:0010468,GO:0010604,GO:0010605,GO:0010629,GO:0012501,GO:0014070,GO:0015630,GO:0016020,GO:0016043,GO:0016064,GO:0016070,GO:0016071,GO:0016321,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0019724,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0031325,GO:0031974,GO:0031981,GO:0032135,GO:0032137,GO:0032138,GO:0032300,GO:0032389,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034397,GO:0034641,GO:0034655,GO:0035556,GO:0035639,GO:0035770,GO:0035825,GO:0036094,GO:0036293,GO:0036464,GO:0042113,GO:0042221,GO:0042493,GO:0043060,GO:0043073,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045141,GO:0045143,GO:0045190,GO:0045191,GO:0045321,GO:0045830,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046649,GO:0046700,GO:0048229,GO:0048232,GO:0048285,GO:0048296,GO:0048298,GO:0048302,GO:0048304,GO:0048316,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051225,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051255,GO:0051257,GO:0051276,GO:0051303,GO:0051304,GO:0051307,GO:0051310,GO:0051311,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0060255,GO:0061458,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0070482,GO:0070887,GO:0070925,GO:0071310,GO:0071407,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090220,GO:0090304,GO:0090305,GO:0090351,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0097587,GO:0098813,GO:0099086,GO:0140013,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1903046,GO:1990391,GO:1990904,GO:2000026
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0323@1,KOG1979@2759
EC2.7.11.24
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko03400,ko04147
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930099.6529999-CDS-H-paniculata_contig35582:1929..21151622930099.6529999-CDS-H-paniculata_contig35582:1929..2115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35582 1930..2115 -
1691481145.7842236-CDS-H-paniculata_contig35582:1929..21151691481145.7842236-CDS-H-paniculata_contig35582:1929..2115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35582 1930..2115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35582.9451.1prot_H-paniculata_contig35582.9451.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35582 1930..2115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35582.9451.1

>prot_H-paniculata_contig35582.9451.1 ID=prot_H-paniculata_contig35582.9451.1|Name=mRNA_H-paniculata_contig35582.9451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
QRSEFILFINDRLVESSSIKKSVEAAYKDVLPKNTHPFVYLAIKMPTRHL
DVNVHPTKREVN
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mRNA from alignment at H-paniculata_contig35582:1930..2115-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35582.9451.1 ID=mRNA_H-paniculata_contig35582.9451.1|Name=mRNA_H-paniculata_contig35582.9451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig35582:1930..2115- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGCTCCGAATTCATCCTGTTCATCAACGACCGCTTGGTGGAGAGTTC
CAGTATCAAGAAGAGCGTAGAGGCCGCGTATAAGGACGTGCTGCCAAAGA
ACACGCACCCCTTCGTGTACCTGGCGATAAAGATGCCGACGCGGCACTTG
GACGTGAACGTGCACCCCACCAAGCGAGAGGTGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig35582:1930..2115-

>mRNA_H-paniculata_contig35582.9451.1 ID=mRNA_H-paniculata_contig35582.9451.1|Name=mRNA_H-paniculata_contig35582.9451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig35582:1930..2115- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGCTCCGAATTCATCCTGTTCATCAACGACCGCTTGGTGGAGAGTTC
CAGTATCAAGAAGAGCGTAGAGGCCGCGTATAAGGACGTGCTGCCAAAGA
ACACGCACCCCTTCGTGTACCTGGCGATAAAGATGCCGACGCGGCACTTG
GACGTGAACGTGCACCCCACCAAGCGAGAGGTGAACCAGCGCTCCGAATT
CATCCTGTTCATCAACGACCGCTTGGTGGAGAGTTCCAGTATCAAGAAGA
GCGTAGAGGCCGCGTATAAGGACGTGCTGCCAAAGAACACGCACCCCTTC
GTGTACCTGGCGATAAAGATGCCGACGCGGCACTTGGACGTGAACGTGCA
CCCCACCAAGCGAGAGGTGAAC
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