mRNA_H-paniculata_contig35574.9449.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35574.9449.1
Unique NamemRNA_H-paniculata_contig35574.9449.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35574.9449.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.710e-6
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 3 
Query:  516 IIAQGDNKPLDYVLMMVGHTHIKIDQIFSRFAVGVRGKNIFTRSQ 650
            ++A    + ++   MMVGHTH+KIDQIFSRF+ G++GKNIFTR+Q
Sbjct:   40 LVAASVIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQ 84
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BLAST of mRNA_H-paniculata_contig35574.9449.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.230e-6
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:  516 IIAQGDNKPLDYVLMMVGHTHIKIDQIFSRFAVGVRGKNIFTRSQ 650
            ++A G     +   ++VGHTHIKIDQ+FSRF+VG  G++IFTRSQ
Sbjct:   64 LVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQ 108
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BLAST of mRNA_H-paniculata_contig35574.9449.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.300e-5
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:  516 IIAQGDNKPLDYVLMMVGHTHIKIDQIFSRFAVGVRGKNIFTRSQ 650
            ++A G     +   ++VGHTHIKIDQ+FSRF+VG  G++IFTRSQ
Sbjct:   64 LVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQ 108
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BLAST of mRNA_H-paniculata_contig35574.9449.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.380e-5
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:  516 IIAQGDNKPLDYVLMMVGHTHIKIDQIFSRFAVGVRGKNIFTRSQ 650
            ++A G     +   ++VGHTHIKIDQ+FSRF+VG  G++IFTRSQ
Sbjct:  231 LVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQ 275
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BLAST of mRNA_H-paniculata_contig35574.9449.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.400e-5
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:  516 IIAQGDNKPLDYVLMMVGHTHIKIDQIFSRFAVGVRGKNIFTRSQ 650
            ++A G     +   ++VGHTHIKIDQ+FSRF+VG  G++IFTRSQ
Sbjct:  176 LVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQ 220
[Close]
BLAST of mRNA_H-paniculata_contig35574.9449.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.740e-5
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 3 
Query:  558 MMVGHTHIKIDQIFSRFAVGVRGKNIFTRS 647
            MMVGHTH KIDQ+FSRF+ G++GKNIFTR+
Sbjct:  257 MMVGHTHTKIDQVFSRFSRGIKGKNIFTRT 286
[Close]
BLAST of mRNA_H-paniculata_contig35574.9449.1 vs. uniprot
Match: A0A6H5KL03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL03_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 8.970e-5
Identity = 39/140 (27.86%), Postives = 68/140 (48.57%), Query Frame = 3 
Query:  231 EQSRVYRTAAADCLASPSYSNKVWRDDMGHVLIGVSLDFMLCDICTQWSQLRHGAPGVTLTQDSMVLAKIEEDYAKHLRLVKADRQVIEDNTRTSIIAQGDNKPLDYVLMMVGHTHIKIDQIFSRFAVGVRGKNIFTRSQ 650
            E+++VY    A  + +  ++ ++     G  L+  +L +   ++   W    H    VT+  D+ V     E+   +L  + A           +++ +G  + +    MMVGHTHI+IDQIFS FA  V+G +IFTR +
Sbjct:  163 ERAKVYGVLVAGVVMNVFFAPQILGT--GTNLVATALYYQFMELTLSWG---HTLGDVTVQVDNTV----SENKNNYLMGILA-----------AMVGRGIMRTVTLCFMMVGHTHIQIDQIFSCFAKAVKGVDIFTREE 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35574.9449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE1.710e-657.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE7.230e-655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE1.300e-555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE1.380e-555.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE1.400e-555.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE2.740e-576.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL03_9PHAE8.970e-527.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35574contigH-paniculata_contig35574:3..2175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size652
Cds size432
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35574.9449.1prot_H-paniculata_contig35574.9449.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35574 3..1254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930099.3709314-CDS-H-paniculata_contig35574:2..821622930099.3709314-CDS-H-paniculata_contig35574:2..82Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35574 3..82 +
1691481145.591991-CDS-H-paniculata_contig35574:2..821691481145.591991-CDS-H-paniculata_contig35574:2..82Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35574 3..82 +
1622930099.3847494-CDS-H-paniculata_contig35574:289..4161622930099.3847494-CDS-H-paniculata_contig35574:289..416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35574 290..416 +
1691481145.6058946-CDS-H-paniculata_contig35574:289..4161691481145.6058946-CDS-H-paniculata_contig35574:289..416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35574 290..416 +
1622930099.3952577-CDS-H-paniculata_contig35574:1029..12541622930099.3952577-CDS-H-paniculata_contig35574:1029..1254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35574 1030..1254 +
1691481145.6192546-CDS-H-paniculata_contig35574:1029..12541691481145.6192546-CDS-H-paniculata_contig35574:1029..1254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35574 1030..1254 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930099.4103086-UTR-H-paniculata_contig35574:1254..12891622930099.4103086-UTR-H-paniculata_contig35574:1254..1289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35574 1255..1289 +
1691481145.631337-UTR-H-paniculata_contig35574:1254..12891691481145.631337-UTR-H-paniculata_contig35574:1254..1289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35574 1255..1289 +
1622930099.4260457-UTR-H-paniculata_contig35574:1469..16061622930099.4260457-UTR-H-paniculata_contig35574:1469..1606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35574 1470..1606 +
1691481145.6413314-UTR-H-paniculata_contig35574:1469..16061691481145.6413314-UTR-H-paniculata_contig35574:1469..1606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35574 1470..1606 +
1622930099.4382663-UTR-H-paniculata_contig35574:2128..21751622930099.4382663-UTR-H-paniculata_contig35574:2128..2175Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35574 2129..2175 +
1691481145.6511788-UTR-H-paniculata_contig35574:2128..21751691481145.6511788-UTR-H-paniculata_contig35574:2128..2175Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35574 2129..2175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35574.9449.1

>prot_H-paniculata_contig35574.9449.1 ID=prot_H-paniculata_contig35574.9449.1|Name=mRNA_H-paniculata_contig35574.9449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
GSAPSPRLEDEDELPTPPNKKRRCQSVKPRGSTAPRHCAIVSFMRNWVKV
YRKSMPNRNVTRLYLSSKGELYKCFKKSRAASIALLPRIVWPLHPIPTKY
GGMTWATSSSGLASTSCFATYVRSGASCAMEHQALRSPRTPWY*
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mRNA from alignment at H-paniculata_contig35574:3..2175+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35574.9449.1 ID=mRNA_H-paniculata_contig35574.9449.1|Name=mRNA_H-paniculata_contig35574.9449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2173bp|location=Sequence derived from alignment at H-paniculata_contig35574:3..2175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGTGCACCATCTCCACGTCTTGAGGACGAAGATGAACTCCCTACTCC
TCCCAACAAGAAGAGGAGATGTCAAAGCGTGTAAGTCCATGTCATATTGG
TACTACTGTTCAACAGTTGTTGTGATAGAAGCCCTCAACGGCGACGTTGT
CGGTCACTTCAAACCCGTGGATGATTTCATGATGACTCAAACTGTTCGAC
GTGCTTGCTGCTACAAGGCTTGTGTCGTTCGCTGATGCGATTTACTGCCT
CTCCTCTGTCCTACTTTTTCGTATCTACAATAATCAGGAAGCCCCGCGGG
TCCACGGCCCCACGACACTGTGCGATTGTATCGTTCATGCGCAATTGGGT
CAAGGTCTACAGAAAGAGTATGCCAAATCGCAACGTAACAAGGCTCTACT
TGTCCAGCAAGGGGGTAAGAAACGGCAAACGAGCAGGGGAATCATGTGCT
AGTGAGCAAAGAAGTAAACAGAGATATTCTGAATATTTTTCAAGCTTTCT
TTATTGGTTGCGATGACGCTGCCATTGCCATGGTTGCTTCGTTTGGTGTT
TTTTAACCCCCGGAAGGCTGAGGCAAAACCTTTTCCGCTGCTTCCACATT
CAGGTATTCACCCAAACATGTCTACATTTCCTTTGGTTACTTCGTTAGTT
CGTAGTTGTGTTGTGCTTGATATGTGTAACCGTGATCGACCGCAATATGT
TTGTGGTGTTGGTTGTGGTGGTTCTGTTGTTTTCCTTTTGTTGCACACAG
TAATCATAGGCAGGTAGCAGTGTTGGTAGCCCTTTTTATAGTAGTATCAG
CACCAGTAGTCGTTGTTATAGTACTCACGTGTTGTGGCAGCATTGGCTTT
TTTTGTGCAGATGTTGTAACAGTAGTACAACAAGATGAAATGCAACCGGC
CAACAAATAGATCACTCTACAGTATGTCGTTGTTTTCATGATGCTTAACT
TCTTTGGTATGCCCGACACGGCCCTCCTTCTCCCTCTACGCTCTGTCTTC
CCCTCATCTGGCATTGATATTTGGCAGGAACTATACAAGTGTTTTAAGAA
GAGCAGAGCCGCGTCTATCGCACTGCTGCCGCGGATTGTCTGGCCTCTCC
ATCCTATTCCAACAAAGTATGGAGGGATGACATGGGCCACGTCCTCATCG
GGGTTAGCCTCGACTTCATGCTTTGCGACATATGTACGCAGTGGAGCCAG
CTGCGCCATGGAGCACCAGGCGTTACGCTCACCCAGGACTCCATGGTATT
AGCCAAGATTGAGGAAGATTATGCCAAGCACCTAAGAGTAAGTGTGGCCT
GTGGGAGAAGTCAACGAGCGCTTTTTGCCTTGTTTGTGTTTCTTATACCT
CTTCCATTCGATTCTGGTGATATGTTATTGGTGACTCGCTCAATGCAGTT
GTGTAATGCGATTTTAACAATCTCACCCTGTCTCCTATTCTTCTTCTTCG
TTCTTTTGTCTTTGCAGCTAGTCAAGGCAGATCGACAGGTGATTGAGGAC
AACACTCGGACAAGCATAATTGCCCAGGGCGACAACAAGCCTCTCGACTA
CGTCTTGATGATGGTTGGGCACACCCACATCAAAATTGACCAGATCTTCT
CCAGGTGACCTCACATCATGCTTGTATTAGTGATGTCTGTTTTGTGTAGA
CCAGTTGCTAGAATAAGAGATGCCGCAATTTGTATAATACCCGTGACGTT
GTACTTGACACTGACAACGTCCCCAATTAGTATTGAATATGCCAAGTTCC
ATTGACATGCATTGAAGTTAAACTGCACGCTGTAGCAGTACTCAATTATT
TGTGCGTTTCGAATGCATTGTTACGTGGTGCTAACGACGTACTTGATGTA
TAACCTCATTTTTGTTGCATGCTCGTAGGTCTACAGTTTTTCTCTTCTGT
AGCTCACCGTACAAACAGCTCAAATTCTCAAATTCTGCAATAATATATTA
TTAGTTAATGCCATAGACATGATTGACACGATTGACTGTGCGCCAAATGT
TTTATACAAGCGAGAGCCAGATCATCTGTGGCACGGCAACTTGTGTACAG
CTCCTTCTTGACATTATTGCCATGATAACGGCTTTGTTTGCACTTCTCCA
TCAATATATCGTTCGCTGACGCGAAGGTTTGCTGTAGGTGTGCGTGGCAA
GAACATCTTCACCAGAAGTCAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig35574:3..2175+

>mRNA_H-paniculata_contig35574.9449.1 ID=mRNA_H-paniculata_contig35574.9449.1|Name=mRNA_H-paniculata_contig35574.9449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig35574:3..2175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGTGCACCATCTCCACGTCTTGAGGACGAAGATGAACTCCCTACTCC
TCCCAACAAGAAGAGGAGATGTCAAAGCGTGGAAGTGCACCATCTCCACG
TCTTGAGGACGAAGATGAACTCCCTACTCCTCCCAACAAGAAGAGGAGAT
GTCAAAGCGTGAAGCCCCGCGGGTCCACGGCCCCACGACACTGTGCGATT
GTATCGTTCATGCGCAATTGGGTCAAGGTCTACAGAAAGAGTATGCCAAA
TCGCAACGTAACAAGGCTCTACTTGTCCAGCAAGGGGGAAGCCCCGCGGG
TCCACGGCCCCACGACACTGTGCGATTGTATCGTTCATGCGCAATTGGGT
CAAGGTCTACAGAAAGAGTATGCCAAATCGCAACGTAACAAGGCTCTACT
TGTCCAGCAAGGGGGAACTATACAAGTGTTTTAAGAAGAGCAGAGCCGCG
TCTATCGCACTGCTGCCGCGGATTGTCTGGCCTCTCCATCCTATTCCAAC
AAAGTATGGAGGGATGACATGGGCCACGTCCTCATCGGGGTTAGCCTCGA
CTTCATGCTTTGCGACATATGTACGCAGTGGAGCCAGCTGCGCCATGGAG
CACCAGGCGTTACGCTCACCCAGGACTCCATGGTATTAGGAACTATACAA
GTGTTTTAAGAAGAGCAGAGCCGCGTCTATCGCACTGCTGCCGCGGATTG
TCTGGCCTCTCCATCCTATTCCAACAAAGTATGGAGGGATGACATGGGCC
ACGTCCTCATCGGGGTTAGCCTCGACTTCATGCTTTGCGACATATGTACG
CAGTGGAGCCAGCTGCGCCATGGAGCACCAGGCGTTACGCTCACCCAGGA
CTCCATGGTATTAG
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