mRNA_H-paniculata_contig35558.9446.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35558.9446.1
Unique NamemRNA_H-paniculata_contig35558.9446.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35558.9446.1 vs. uniprot
Match: A0A8B6H201_MYTGA (WSC domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6H201_MYTGA)

HSP 1 Score: 56.6 bits (135), Expect = 2.060e-7
Identity = 31/80 (38.75%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:   34 YSEVGCLEDFEDPNRIMGDFVSDQQPMSAEICFGLCSGGS----YTHFGTQYFSQCFCGTDTDVS---VTVSESECNTPC 252
            Y   GC  D  D  R++ +   D   MSAEICF +C+       + +FGTQY  +CFCG  T++        E+EC TPC
Sbjct:   28 YLYDGCYVD--DTYRVLDEDYKDNDEMSAEICFKICTESQNWKEHVYFGTQYAKECFCGNGTELGHEPYVKRETECTTPC 105
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BLAST of mRNA_H-paniculata_contig35558.9446.1 vs. uniprot
Match: A0A8B6DYS0_MYTGA (WSC domain-containing protein n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DYS0_MYTGA)

HSP 1 Score: 55.1 bits (131), Expect = 5.280e-7
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:   34 YSEVGCLEDFEDPNRIMGDFVSDQQPMSAEICFGLCSGG--SYTH--FGTQYFSQCFCGTDTDVSVTVSES-------ECNTPC 252
            Y   GC  D  D  R++ +   +++PMSA+ICFG+C+    SY H  FGTQ+  +CFCG   D    +SES       ECN PC
Sbjct:  116 YEYDGCYVDNSD--RVLDEEHKNKKPMSADICFGICTEKQTSYKHLYFGTQFGHECFCG---DGQELISESYPRKKDSECNDPC 194
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BLAST of mRNA_H-paniculata_contig35558.9446.1 vs. uniprot
Match: UPI001DB11B5C (uncharacterized protein n=1 Tax=Truncatella angustata TaxID=152316 RepID=UPI001DB11B5C)

HSP 1 Score: 55.5 bits (132), Expect = 5.490e-7
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:   34 YSEVGCLEDFEDPNRIMGDFVSDQQPMSAEICFGLCSGGSYTHFGTQYFSQCFCGTD-TDVSVTVSESECNTPCS 255
            +S  GC  D      I  D  +  Q M++E C   C+   Y + GT+Y+S+C+CGT+ TD +  V+ES+CNT CS
Sbjct:   36 WSYSGCYTDV--GRTIDADSTTGDQ-MTSESCITYCASKGYPYAGTEYYSECYCGTELTDGAAKVAESDCNTACS 107
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BLAST of mRNA_H-paniculata_contig35558.9446.1 vs. uniprot
Match: A0A698XLC6_9EURO (Uncharacterized protein n=2 Tax=Eurotiales TaxID=5042 RepID=A0A698XLC6_9EURO)

HSP 1 Score: 54.3 bits (129), Expect = 1.410e-6
Identity = 32/74 (43.24%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:   34 YSEVGCLEDFEDPNRIMGDFVSDQQPMSAEICFGLCSGGSYTHFGTQYFSQCFCGTDTDVSVT-VSESECNTPC 252
            YS VGC  D  D         SD   M+   C   CSG  Y +FGT+Y +QCFCGT    S T  +E+EC+ PC
Sbjct:  540 YSYVGCYTDDVDSRTFSAATNSDNN-MTLSECSNFCSG--YQYFGTEYTTQCFCGTTLSSSSTEAAEAECSMPC 610
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BLAST of mRNA_H-paniculata_contig35558.9446.1 vs. uniprot
Match: A0A8B6H222_MYTGA (WSC domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6H222_MYTGA)

HSP 1 Score: 50.8 bits (120), Expect = 2.200e-5
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:   34 YSEVGCLEDFEDPNRIMGDFVSDQQPMSAEICFGLCSG--GSYTH--FGTQYFSQCFCGTDTDVSVT----VSESECNTPC 252
            Y  VGC  D  D  R+  +   + + MSA+ICF +C+G   SY H  FGTQ+  +C+CG    ++      +  SEC+ PC
Sbjct:   22 YEYVGCYVD--DEYRLFDEENKNNEAMSADICFDICTGFQTSYKHVYFGTQFGHECYCGDGEQLNSKPYPRIQYSECSMPC 100
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BLAST of mRNA_H-paniculata_contig35558.9446.1 vs. uniprot
Match: A0A162LVK8_METRR (WSC domain containing protein n=2 Tax=Metarhizium rileyi TaxID=1649241 RepID=A0A162LVK8_METRR)

HSP 1 Score: 50.4 bits (119), Expect = 3.160e-5
Identity = 33/92 (35.87%), Postives = 44/92 (47.83%), Query Frame = 1 
Query:    1 VTPAPL------PVEQDYSEVGCLEDFEDPNRIMGDFVSDQQPMSAEICFGLCSGGSYTHFGTQYFSQCFCGTD-TDVSVTVSESECNTPCS 255
            VTP P       P    Y+ VGC  +     R +G   +    M+ E C   C   +Y +FGT+Y S+C+CG+   D S T    ECN PCS
Sbjct:  673 VTPTPTATLSHKPTISPYTMVGCWSEGTGA-RALGQAATSSDKMTNEACATFCK--TYKYFGTEYGSECYCGSFLADSSKTAPLEECNMPCS 761
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BLAST of mRNA_H-paniculata_contig35558.9446.1 vs. uniprot
Match: A0A2P4ZTA6_9HYPO (Copper radical oxidase n=5 Tax=Trichoderma TaxID=5543 RepID=A0A2P4ZTA6_9HYPO)

HSP 1 Score: 50.1 bits (118), Expect = 4.360e-5
Identity = 27/86 (31.40%), Postives = 44/86 (51.16%), Query Frame = 1 
Query:   10 APLPVEQDYSEVGCLEDFEDPNRIMGDFVSDQQPMSAEICFGLCSGGSYTHFGTQYFSQCFCGTD-----TDVSVTVSESECNTPC 252
            AP  ++  ++  GC     D  R +G   +    M+ E C   C G  + + GT+Y++QC+CG+      T+ +VT    +CNTPC
Sbjct:   32 APASLDNGWAYQGCYIANSDVGRTIGAASTTDADMTNEECTSYCFGLGFPYAGTEYYTQCYCGSSLATGGTNATVT----DCNTPC 113
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BLAST of mRNA_H-paniculata_contig35558.9446.1 vs. uniprot
Match: A0A2V1BU94_9HELO (WSC-domain protein n=2 Tax=Cadophora TaxID=210567 RepID=A0A2V1BU94_9HELO)

HSP 1 Score: 49.3 bits (116), Expect = 7.580e-5
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 1 
Query:   34 YSEVGCLEDFEDPNRIMGDFVSDQQPMSAEICFGLCSGGSYTHFGTQYFSQCFCGTDT--DVSVTVSESECNTPC 252
            Y+EVG          +MG   ++   M+ E C   CS   + + GTQY SQCFCG+      +++ + S+CN PC
Sbjct:   41 YTEVG--------RTLMGASYTNTTAMTDESCINYCSERGFIYAGTQYSSQCFCGSSIAPGAAISTTPSDCNMPC 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35558.9446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A8B6H201_MYTGA2.060e-738.75WSC domain-containing protein n=1 Tax=Mytilus gall... [more]
A0A8B6DYS0_MYTGA5.280e-741.67WSC domain-containing protein n=3 Tax=Mytilus gall... [more]
UPI001DB11B5C5.490e-740.00uncharacterized protein n=1 Tax=Truncatella angust... [more]
A0A698XLC6_9EURO1.410e-643.24Uncharacterized protein n=2 Tax=Eurotiales TaxID=5... [more]
A0A8B6H222_MYTGA2.200e-537.04WSC domain-containing protein n=1 Tax=Mytilus gall... [more]
A0A162LVK8_METRR3.160e-535.87WSC domain containing protein n=2 Tax=Metarhizium ... [more]
A0A2P4ZTA6_9HYPO4.360e-531.40Copper radical oxidase n=5 Tax=Trichoderma TaxID=5... [more]
A0A2V1BU94_9HELO7.580e-534.67WSC-domain protein n=2 Tax=Cadophora TaxID=210567 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35558contigH-paniculata_contig35558:245..2180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.8
Seed ortholog evalue9.1e-08
Seed eggNOG ortholog5145.XP_001912333.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Podospora anserina S mat genomic DNA chromosome
EggNOG OGs21QNZ@147550,39X52@33154,3P073@4751,3RK45@4890,3UBG9@5139,KOG1216@1,KOG1216@2759,KOG4157@1,KOG4157@2759
COG Functional cat.GO
Best tax levelSordariales
Best eggNOG OGNA|NA|NA
Exons3
Model size256
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35558.9446.1prot_H-paniculata_contig35558.9446.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35558 245..2180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930099.033193-CDS-H-paniculata_contig35558:244..3131622930099.033193-CDS-H-paniculata_contig35558:244..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35558 245..313 -
1691481145.4473708-CDS-H-paniculata_contig35558:244..3131691481145.4473708-CDS-H-paniculata_contig35558:244..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35558 245..313 -
1622930099.0513477-CDS-H-paniculata_contig35558:1645..17081622930099.0513477-CDS-H-paniculata_contig35558:1645..1708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35558 1646..1708 -
1691481145.4575655-CDS-H-paniculata_contig35558:1645..17081691481145.4575655-CDS-H-paniculata_contig35558:1645..1708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35558 1646..1708 -
1622930099.0703192-CDS-H-paniculata_contig35558:2057..21801622930099.0703192-CDS-H-paniculata_contig35558:2057..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35558 2058..2180 -
1691481145.4658458-CDS-H-paniculata_contig35558:2057..21801691481145.4658458-CDS-H-paniculata_contig35558:2057..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35558 2058..2180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35558.9446.1

>prot_H-paniculata_contig35558.9446.1 ID=prot_H-paniculata_contig35558.9446.1|Name=mRNA_H-paniculata_contig35558.9446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
VTPAPLPVEQDYSEVGCLEDFEDPNRIMGDFVSDQQPMSAEICFGLCSGG
SYTHFGTQYFSQCFCGTDTDVSVTVSESECNTPCS
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mRNA from alignment at H-paniculata_contig35558:245..2180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35558.9446.1 ID=mRNA_H-paniculata_contig35558.9446.1|Name=mRNA_H-paniculata_contig35558.9446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1936bp|location=Sequence derived from alignment at H-paniculata_contig35558:245..2180- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCACCCCAGCTCCCTTGCCGGTAGAGCAGGATTACAGCGAAGTCGGGTG
CTTGGAGGATTTCGAGGACCCGAACAGGATCATGGGTGATTTCGTCTCTG
ATCAGCAGCCTATGTCGGCCGAGGTGCGCACCATGTGTTGCGGGCATCGG
GTGCCGGTGGAGTTTCCACCGGTTCATCGCCAATTTCGTGCACGGGGTTG
ATAAGTTGATAATGCTGTGTTGTAGCACAATTGAAGTTTGGGTCTTTGGT
CGTGTTGTGTTCGGTCAGGAATATGATGTTTGGTAGCATTTTATTCAGAA
TAGGGCGTGCCGTGGCGGTCGTGTAGAAGAATTTGTGCGCTTGCTAGAGC
TTCTGCTTCCGCCAAGTCTAGAGCCATATGACCTCGATCGCTGTTGCTGT
GTCTATTGTGCTGACCACTGGAAATGGTTCTTGCCCTCGTACGTACACCA
TACGTCGTTGGAATGTGGACAGATTTGCTTCGGACTCTGCAGCGGCGGGT
CGTACACACACTTCGGAACCCAGTACTTCTCCCAGGTGAGACTGCAATAC
GGCGAGTTATTGGGTTGTGTTGAAGCTGGCTCCAGGAAGACGCACGATAT
TCAGTTGCCATGATGTGTCTTTTGGTCTACAGGGTCAATCAAGTTATCGC
GGAGAACAGGCCCACTCGATGCCGAGAACGAGGGCAAACAACAGACGATG
GCATGCATCGATTCGGGTTACAACTACGTTTCACGTTCATAGTGGCTGTT
CTCCGAAGACGCGTGTCGTGGTAATTGAGATTGGTTGGGCTAGGCGGTCC
GGTCCAGTATTCCGCGTCTCTGGGATGCTTTCAATGGCGACGTGACCGCA
CGGCCATGGGACGGTAACAGCGTGGCCGTCGCTTTCACGGCGACGGTCCG
ACCGTGGCCGGGCCGTGACCGCTGGGCCCGGGGCCCGACGATCGCCCGGA
TATCGCAATGAGAGCGATGGCCGCGCTGTTGCCGTCCCACCGCCGGGCTA
GGGTAGTATGGAGTGTGTAACGCCGGGGGAAGGTAGTAGTGAGACTCCGT
GTTGCTGTTCGGATGGAAAATGGCGCAGTTTATTGTTGTACTATAGACGA
AGGGGTATGAATTGTTGGGAACATGTACAACTATCCGTTACAAAATATGA
GGAGAAACGGTTCGCTTATCGACCGTCAGCTCCGTCGCCCGCTATTGGGC
CGTTCAATATGCTCCGAATGTATTATTCTAATGAATTACGGTGTGCCTGA
CGCCAACCAAAGTAAAAGTTGCAATGATCGATAAAGCATCTGCACAAAAA
ACGTTTCTTTGAATCGAAACGTTGGTCAACATTCCCGAATATAGTGCCAC
GTGACCATATTCTAACCTCCTAGCGTGTACGGACGATTCCTGCAATGGAC
GATTAAGAGTCAGAGTAGTGCTTTCAGACTAAGGCGTTCCAAACGAACTA
TAAAACCCCTGGCCAGGGCACGGCCTCACAAAATGGCACTGCGATCACCC
CGTTACCCAGCCATGGCTTCCCACGGCCTGACCATGGGAATGTGATGGCT
GCCATGACCATGTCCGGGCCATGGCCCGGCGGTGATGTCGTCAAATAATG
CCAAACACAGCGATTCTGTCAACTGTTGACTATTTCCTTGGCTTGTCTGA
AAAAACGTACATGTTTAGCATCATCTAATGTGTGTGTTGCTGCTGACAAC
GCTATTTGCTCCCAAGCTCTACACTGGCGACGAGTGAGGAAGTCGTGAGT
AGAAGTTAAGGTCACGCCTCGATTGGTACGATACTTGAGCACTACCCCTA
ACTCGCCGCTTGAATGCCTGCCACCTCCCGAAACTATTGTGGACTACCGT
TTCCGCATGTAATTCAGTGCTTCTGCGGAACGGACACGGACGTTTCGGTC
ACGGTATCCGAGTCCGAATGCAACACACCATGCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig35558:245..2180-

>mRNA_H-paniculata_contig35558.9446.1 ID=mRNA_H-paniculata_contig35558.9446.1|Name=mRNA_H-paniculata_contig35558.9446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig35558:245..2180- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCACCCCAGCTCCCTTGCCGGTAGAGCAGGATTACAGCGAAGTCGGGTG
CTTGGAGGATTTCGAGGACCCGAACAGGATCATGGGTGATTTCGTCTCTG
ATCAGCAGCCTATGTCGGCCGAGGTCACCCCAGCTCCCTTGCCGGTAGAG
CAGGATTACAGCGAAGTCGGGTGCTTGGAGGATTTCGAGGACCCGAACAG
GATCATGGGTGATTTCGTCTCTGATCAGCAGCCTATGTCGGCCGAGATTT
GCTTCGGACTCTGCAGCGGCGGGTCGTACACACACTTCGGAACCCAGTAC
TTCTCCCAGATTTGCTTCGGACTCTGCAGCGGCGGGTCGTACACACACTT
CGGAACCCAGTACTTCTCCCAGTGCTTCTGCGGAACGGACACGGACGTTT
CGGTCACGGTATCCGAGTCCGAATGCAACACACCATGCTCGTGCTTCTGC
GGAACGGACACGGACGTTTCGGTCACGGTATCCGAGTCCGAATGCAACAC
ACCATGCTCG
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