mRNA_H-paniculata_contig3552.9440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3552.9440.1
Unique NamemRNA_H-paniculata_contig3552.9440.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3552.9440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3552contigH-paniculata_contig3552:8109..12004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size610
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3552.9440.1prot_H-paniculata_contig3552.9440.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3552 8109..9405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930098.4109342-CDS-H-paniculata_contig3552:8108..83721622930098.4109342-CDS-H-paniculata_contig3552:8108..8372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3552 8109..8372 -
1691481145.1897619-CDS-H-paniculata_contig3552:8108..83721691481145.1897619-CDS-H-paniculata_contig3552:8108..8372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3552 8109..8372 -
1622930098.4228153-CDS-H-paniculata_contig3552:9210..94051622930098.4228153-CDS-H-paniculata_contig3552:9210..9405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3552 9211..9405 -
1691481145.1992307-CDS-H-paniculata_contig3552:9210..94051691481145.1992307-CDS-H-paniculata_contig3552:9210..9405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3552 9211..9405 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930098.4382045-UTR-H-paniculata_contig3552:9405..94931622930098.4382045-UTR-H-paniculata_contig3552:9405..9493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3552 9406..9493 -
1691481145.2112694-UTR-H-paniculata_contig3552:9405..94931691481145.2112694-UTR-H-paniculata_contig3552:9405..9493Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3552 9406..9493 -
1622930098.4639075-UTR-H-paniculata_contig3552:11943..120041622930098.4639075-UTR-H-paniculata_contig3552:11943..12004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3552 11944..12004 -
1691481145.2206821-UTR-H-paniculata_contig3552:11943..120041691481145.2206821-UTR-H-paniculata_contig3552:11943..12004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3552 11944..12004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3552.9440.1

>prot_H-paniculata_contig3552.9440.1 ID=prot_H-paniculata_contig3552.9440.1|Name=mRNA_H-paniculata_contig3552.9440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MSTTEAAPPSGAASGVSETHKSIVANACVETNGTTCAKTNDTADLATPIA
SADSAPVAPAGAAKQLHKLMPATAGATPAATPAATPATPPRTAAAEASSA
AHSASSSANNSGVSQCNRQESSTITSTGHGSSLGNNGKGGRGEGAAVGAG
GAG
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mRNA from alignment at H-paniculata_contig3552:8109..12004-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3552.9440.1 ID=mRNA_H-paniculata_contig3552.9440.1|Name=mRNA_H-paniculata_contig3552.9440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3896bp|location=Sequence derived from alignment at H-paniculata_contig3552:8109..12004- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGACTGAATCCAATTTGGACACCATTGCAGAGTGATTTAGCAGCTGGTA
CAGAGTGTCAGGTAGGTGAGCGCAATGAGAGTGTTTGCTTGCTGTGAAAA
GGTATATTTTTCCGCAGCATGATGAGCATGGAGCGAGGGTCTATCGTACC
TTGCACATTCGGCACGCATAATCATGCCAGCTGGGTAAATTTGGCGCATG
GATGACTTGGTGGTAGAAGTCGATTAGTTAGTCTCTTGAGCATTCTCCTT
CGTAACCTGGACACATGACTTGCGCCACAGAGAAGCTGGTACTCCCAGGT
CAAGGAACAACGGACTGAGCTCACACAGAAAATTCTTTATGGCAACGAAA
GGCAGCTGGCGTATGCAAGTGACTCGCGTAACAGGAAACACCCAGTCACC
ACCAACGTGATGAAATCTGTCGTTATTTGTGAAAATGGACGTGATAGACC
AGCCCACGATGACTGCATCTATTTTCTGCCATATACCTATGTTTTGGAGA
TCTTGTGTAGCACAGATGCGTCGCTGGGCAGTTGGACGCTGTTGTGTGCA
ATGTGCCCAGGAAGGCGCTTTGCAGTCTCTCGGTACTCGTTTATTCGCCG
CGTGCACATCCTTGATTTTTTGTTGCAGTGGAGGCCACAGGCGGGGGAGC
AACAGACAGAACAGTGCAAAAGTCCGTAGAGGAGAGCTGAACTGCAAATG
AAGTATGTGGACAAATGTGGAACACCGTACTTACTGACGTGAACTACGTA
GTGTACTCGCCTCCCAATTGCCCAGGACACGATGATTGATTGCCCTGGTG
GGATATCGGTTGCAAAGTTATGGTCGTATCCATGTGTACAAAAAAATATT
GGAGGGGGCGTTGTAATTGCCCATGTATTTGTCCACAGCACCTACCGACC
CTGATGACAAACCCTTTTTGCTGATTCTTCAACACTGGGTCGGGAAACTT
CTAGAATCGATTATTCGACTTTGACATATTGCAGCACAGTCAAGTGTTCC
GTCTCGGCTTTTTCGTTGTGTTTTCAGCACACCCTCAATCGGTGATGCTT
GCCAGAGTCCGGGAGGCAGGAGAAATAGAGAACCACGTAGATGTTGGTAC
ACAGTAATACAGCACCTAGATATTTACATCTTATAAGAACCGGAGGTCAA
TTCCAACAATTGCAGCGCAGAAACGGCTCGAGTGAAGAAAACAAAAATAA
ATATGGTGCGCCAATTGTACATGCAAAACGTGAAATCATTTTCCATCATG
TTGTCGGTTGATCGCTCCCATGTGTATGGGTCGATCCCTGCAAGGCCGGC
CAATTAGAATCGCTCATTTTCGGCCCATGGGTAGCGCTTTTTCCTCGAGG
CCTGGCCTGTACGGCCAACCTGCCAGAGCACGGCATTCTCTGGCCCATGA
CTATGGCGGCGAGCAGAGCTTGGGGTCAGTGATGACGCTGCCGTAATGTA
TCTTCGGCGCTGTACTATCGTATCTTTGTCCTGTTCGCATTCTGTGCATT
TTTAACAGCGCGACAACGCATTCTTTGGGTGCGCTATTGGTTATTGGTGA
GGGAAATGCCCCTAGTTCTGCACAACGCAGAAGCGGTTAGGTTTACTCTG
TATGCAACTTGTCGTGAAGGGTTCAGCAGCAGCGCAAGCACCGGTATTAG
TACCTGCAGCGGCAGCAGATGGCAAAAGAGGGCAAGTGCGGCATCATGCA
CTCTGCCTACATTCCCTTATGCAGCAAAAAGTGTCTTTTGAGGGATAGTT
CACGTAAAGGTCGTCCTCTATGTCTGTCTTGTCTGTGTCGCTGTTCTCCA
ACCAAGAACGGGTATTCATTCACCTAACCTGCTGCAAAAAATTGAAGCAG
CACCACCTCGGCGGCATGTTGAACTTTTGTCGATCGCGAGTGTTGTGGTC
GGGTTAACTGGACTAGATACACCGTTACCACCACAGAGAATCAGGAATTA
GCTACTACATACTTGTACCACGAAAAAAATGTTGCGACGGACTAGGTCTG
TGTATAGCGCCTGACCTTGGGCTATAACCGTCCCCGACAGCATGCATCAA
CTCATTCTCGAATTTCTATACCAGTATATTTTATCCGCCTGAGATTGATA
GACATCTCAAGTGCCCCCCGCCGTTTTCCTCTGTCCTCGGCCACGCTCGT
TGCGCACTGATATACATGCACCATTGTGTGGACAGCTACTACTAAAGCAT
CCGGCCGACAGTTGAACAACAGCCGAGAGGGAGACTAACTCGTGGACCTC
CTGTTAAATACGTTAAGGATGGCCATTGATCTGTTGAAAGAAATAAACAC
CGTATGTAAATACACCATCATAGATCCATTTATGTATCCTGTTTTAAAAC
ATCGACAGTATAAAAATAACTGAAGAGATTCTTTGTTTTGTGACGTTTTA
CGTGATAATATTTGTTGGTAAAGATATCGTTATTTGCGTATTTTTTTACA
TGTTTCTATACAACTTTTTTTTTTTTCTCTTGTCGTTTTAAAAAAAAAAA
ATCGGTGGCAGATCTCTCGTAGTATCAGCCCAAACGGCTACTGCTGCTAT
TACTACTGCTACCACTACTACTGCTACTACTACACTACAGCTTCGCATCA
TGAGTACTACAGAGGCGGCACCACCTTCTGGCGCTGCCTCCGGCGTATCA
GAAACGCACAAGTCGATAGTGGCGAACGCGTGTGTGGAGACTAATGGTAC
TACGTGTGCGAAGACTAATGATACTGCCGATCTTGCTACTCCCATCGCTT
CTGCTGATTCTGCTCCTGTTGCACCAGCTGGCGCTGCAAAGCAGGTAATG
GAGGGGTGGCAATGAAATAGTTAACTGCTGATGAGCTTTTAAAGAAATAC
AAGATGGATATGTGGGAAAGCCTGGGTGGTGGTTGGGGTCGAAACATGTG
TTGAATGAAAATACTATTTCTCGCTATTGCTACTGTACCAGTTTTGTTTT
TTCCAACTATGTACCTATATTTTTCTTTGGCTCTGTGCATCCATAGAAAC
GGCGCTTTTAAGTATTTTGGAGTAACTGCTACTTGATGCGCAACAACGTG
ATGATGATGATACTGACCTAATTTGATGCCTTCAGCTTAACCCTTTAAAA
ATTGGGCTTTGTAACGGTCAAAAAGTACTTTTGCCAACGACCAGTTGTAA
ATAATAAATTCGTGAAACAGAATGGCTTCCCCAGCTCTCCAGAGCTAGTT
GGTGCATCCAACGTGCACAGGGGGTGCATTTTGGCCGTTCGGGGGCTTTT
TATCTTGCATTAGTGTAAAGGGAGAACAGGCAAACGCCAGCTTTCCCCCT
AATGCTTAAATATTGAAACAAGCACTCCACAGCTGGTTAGGGCGTCAGAA
TTTTCCTAAGAAGTTACTGCGTCCTCCATAGTTATAGAGTCTATACCACT
ATTCAGAGCTTTTATCCGAGATGACGGGCAGTGTTACCACCACACACTAG
TCCATCATAACATTGCTGGGGTCCGGGTTTCGAGCTATAGTTGGTCGCCA
TGTGCTGCTTGCTATAGTAGCTTTGGTATTTTTGACATAACCTGCTGTAG
GTTTACTCTATCTATTACACACGTGTTCTGCGCTCTCCCCGGTTGTACTC
TGCCTGTTTTATTTATTTATTATTTTCACCAGCTGCACAAATTAATGCCC
GCCACAGCGGGAGCAACACCAGCAGCAACACCAGCAGCAACACCAGCAAC
ACCCCCACGAACAGCAGCAGCAGAAGCTTCATCGGCGGCCCATTCAGCAT
CGTCCTCCGCCAATAATTCCGGTGTCTCACAATGCAACAGACAGGAGAGT
TCAACTATCACTTCTACAGGTCATGGTAGTAGCTTGGGAAACAACGGCAA
AGGGGGTAGAGGAGAAGGCGCGGCAGTCGGGGCAGGTGGAGCCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3552:8109..12004-

>mRNA_H-paniculata_contig3552.9440.1 ID=mRNA_H-paniculata_contig3552.9440.1|Name=mRNA_H-paniculata_contig3552.9440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig3552:8109..12004- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTACTACAGAGGCGGCACCACCTTCTGGCGCTGCCTCCGGCGTATC
AGAAACGCACAAGTCGATAGTGGCGAACGCGTGTGTGGAGACTAATGGTA
CTACGTGTGCGAAGACTAATGATACTGCCGATCTTGCTACTCCCATCGCT
TCTGCTGATTCTGCTCCTGTTGCACCAGCTGGCGCTGCAAAGCAGATGAG
TACTACAGAGGCGGCACCACCTTCTGGCGCTGCCTCCGGCGTATCAGAAA
CGCACAAGTCGATAGTGGCGAACGCGTGTGTGGAGACTAATGGTACTACG
TGTGCGAAGACTAATGATACTGCCGATCTTGCTACTCCCATCGCTTCTGC
TGATTCTGCTCCTGTTGCACCAGCTGGCGCTGCAAAGCAGCTGCACAAAT
TAATGCCCGCCACAGCGGGAGCAACACCAGCAGCAACACCAGCAGCAACA
CCAGCAACACCCCCACGAACAGCAGCAGCAGAAGCTTCATCGGCGGCCCA
TTCAGCATCGTCCTCCGCCAATAATTCCGGTGTCTCACAATGCAACAGAC
AGGAGAGTTCAACTATCACTTCTACAGGTCATGGTAGTAGCTTGGGAAAC
AACGGCAAAGGGGGTAGAGGAGAAGGCGCGGCAGTCGGGGCAGGTGGAGC
CGGGCTGCACAAATTAATGCCCGCCACAGCGGGAGCAACACCAGCAGCAA
CACCAGCAGCAACACCAGCAACACCCCCACGAACAGCAGCAGCAGAAGCT
TCATCGGCGGCCCATTCAGCATCGTCCTCCGCCAATAATTCCGGTGTCTC
ACAATGCAACAGACAGGAGAGTTCAACTATCACTTCTACAGGTCATGGTA
GTAGCTTGGGAAACAACGGCAAAGGGGGTAGAGGAGAAGGCGCGGCAGTC
GGGGCAGGTGGAGCCGGG
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