mRNA_H-paniculata_contig3550.9438.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3550.9438.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE) HSP 1 Score: 186 bits (471), Expect = 8.820e-48 Identity = 192/485 (39.59%), Postives = 245/485 (50.52%), Query Frame = 3
Query: 171 MDQDGLFLILSMCNVCRTSKGSWKKCMSKRHNPRLLTVHKEKLTFAHRQCVKPDQTMTIYKLRNHETNEEFLEFSDEIVFQTPCPRCTGIKGCINLGHRLVDWQPVFTDKESPPHGNIVEDDEALGAVSTPSPSKGSSTXXXXXXXXXXXXXXXANASTGGRGRKGAFSPSGATAAGAFPATAPASTGRGGRRSGGAGKGKIGKGVGAGKAGGGXXXSAPSGGPDEAGGGMMDEADAISSK---GSHKRKSPGPVASPPAKNSKISTPRSAPPSSQVAEEPGSLKRPGQEAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDHALDGDASSQDMSLVGDGGEEGIAAESAVGEVDGDGGDIKFGTDSKELSIQEQLEAVKQEEAELLKQFEHTHHQCARDEEVKREEMAAFQAAGEAAILEMRRKKEESLHWISEQRKKIAFERETLVRQRIKELEAEQAQARKEAQEREARLQAEKEALSK 1616
MDQDGLFL+L MCN C +KGSWKKCMS+RHNPR+ TV +++LT +HRQCVKPDQ +TIYKL +HETNE++LEF +EI+FQT C C IK C+ LG VF+ +T G+G K A P GRG RRS P++ G E + SS+ HKR+ K TP + + V P +++R A A XXXXXXXXXXXXXXXXXXXXXXXXXXX DGDA G+ + V ++ E+LE VK EEAELL++FE TH + A++EE KR+EMA FQ AGEAA+ M+++KEE+L IS +RK A ER+ L+ QR KE EAE+ + R EA+ER+ARL+AEKE L+K
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLGK-------VFS-------------------------------------------------ATFGKGGKSA---------------GPLKGGRGRRRSA----------------------------PEKLGDIHEMEIETDSSEVCERPHKRRG------------KAGTPANP---AAVTLSPKAMRRDSFAASPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSDGDAGL------------GVTSPPPV-----------------PTTVAERLELVKGEEAELLREFEETHKRIAQEEEAKRQEMARFQRAGEAALRAMQKEKEEALQRISAERKCKAAERKELLHQRFKEFEAEETELRIEARERDARLEAEKEQLAK 342
BLAST of mRNA_H-paniculata_contig3550.9438.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI) HSP 1 Score: 170 bits (430), Expect = 3.080e-45 Identity = 69/107 (64.49%), Postives = 89/107 (83.18%), Query Frame = 3
Query: 171 MDQDGLFLILSMCNVCRTSKGSWKKCMSKRHNPRLLTVHKEKLTFAHRQCVKPDQTMTIYKLRNHETNEEFLEFSDEIVFQTPCPRCTGIKGCINLGHRLVDWQPVF 491
MDQDGLFL+L MCN C +KGSWKKCMS+RHNPR+ TV +++LT++HRQCVKPDQ +TIYKL +HETNE++LEF ++I+FQT C C IK C+ GH+L+DW+P F
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTF 107
BLAST of mRNA_H-paniculata_contig3550.9438.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI) HSP 1 Score: 119 bits (299), Expect = 1.130e-24 Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 3
Query: 171 MDQDGLFLILSMCNVCRTSKGSWKKCMSKRHNPRLLTVHKEKLTFAHRQCVKPDQTMTIYKLRNHETNEEFLEFSDEIVFQTPCPRCTGIKGCINLGHRLVDWQP 485
MD DG L++S CN CR +K + C+ ++HN RL V +++L HRQCVKPDQTMTI+KL + T EE +E+S +++FQ PC C +K CI GH L DW P
Sbjct: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTP 105
BLAST of mRNA_H-paniculata_contig3550.9438.1 vs. uniprot
Match: D7FMR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR0_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 6.990e-5 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 3
Query: 1293 QLEAVKQEEAELLKQFEHTHHQCARDEEVKREEMAAFQAAGEAAILEMRRKKEESLHWISEQRKKIAFERETLVRQRIKELEAEQAQARKEAQEREARLQAEKEALSKA 1619
QLE + E EL F+ + EE KR EMAAFQ AGEAA+ M R ++ + K +R+ + R R++E++ E+A+ + E+++REARL+AEKEALS+A
Sbjct: 260 QLELLSAAEGELRVAFDAHMKYLSEVEEAKRAEMAAFQRAGEAALQNMERSRKATTDDGLRLHKAFLNQRQRITRLRMEEVDQERARNQVESEKREARLKAEKEALSRA 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3550.9438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3550.9438.1 >prot_H-paniculata_contig3550.9438.1 ID=prot_H-paniculata_contig3550.9438.1|Name=mRNA_H-paniculata_contig3550.9438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=540bp MDQDGLFLILSMCNVCRTSKGSWKKCMSKRHNPRLLTVHKEKLTFAHRQCback to top mRNA from alignment at H-paniculata_contig3550:8142..17085+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3550.9438.1 ID=mRNA_H-paniculata_contig3550.9438.1|Name=mRNA_H-paniculata_contig3550.9438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8944bp|location=Sequence derived from alignment at H-paniculata_contig3550:8142..17085+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3550:8142..17085+ >mRNA_H-paniculata_contig3550.9438.1 ID=mRNA_H-paniculata_contig3550.9438.1|Name=mRNA_H-paniculata_contig3550.9438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3240bp|location=Sequence derived from alignment at H-paniculata_contig3550:8142..17085+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |