mRNA_H-paniculata_contig35493.9432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35493.9432.1
Unique NamemRNA_H-paniculata_contig35493.9432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35493.9432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35493contigH-paniculata_contig35493:1559..2116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35493.9432.1prot_H-paniculata_contig35493.9432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35493 1703..2008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930096.2430425-UTR-H-paniculata_contig35493:1558..17021622930096.2430425-UTR-H-paniculata_contig35493:1558..1702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35493 1559..1702 +
1691481144.5290139-UTR-H-paniculata_contig35493:1558..17021691481144.5290139-UTR-H-paniculata_contig35493:1558..1702Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35493 1559..1702 +
1622930096.3469422-UTR-H-paniculata_contig35493:2008..21161622930096.3469422-UTR-H-paniculata_contig35493:2008..2116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35493 2009..2116 +
1691481144.5470479-UTR-H-paniculata_contig35493:2008..21161691481144.5470479-UTR-H-paniculata_contig35493:2008..2116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35493 2009..2116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930096.3240597-CDS-H-paniculata_contig35493:1702..20081622930096.3240597-CDS-H-paniculata_contig35493:1702..2008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35493 1703..2008 +
1691481144.5377827-CDS-H-paniculata_contig35493:1702..20081691481144.5377827-CDS-H-paniculata_contig35493:1702..2008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35493 1703..2008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35493.9432.1

>prot_H-paniculata_contig35493.9432.1 ID=prot_H-paniculata_contig35493.9432.1|Name=mRNA_H-paniculata_contig35493.9432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MAVRVRCDADKTYPGTKLHTLCYSARPPIGVPLYQNIVTKKGVADGSSLF
HLCTYLSYPNKIRHLAGHFEWPTQGSNPFLNSKIPRPNSYPSMLDPSLMR
L*
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mRNA from alignment at H-paniculata_contig35493:1559..2116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35493.9432.1 ID=mRNA_H-paniculata_contig35493.9432.1|Name=mRNA_H-paniculata_contig35493.9432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=558bp|location=Sequence derived from alignment at H-paniculata_contig35493:1559..2116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCGAACAGCTTGTCTTGAGGCACAAGCATGTTTTGGCGACTCGCGGG
TACATGACTAAACTCCACAAAACTCCGGGGAGGGAAAGTTACAGAGAGTC
AAGATACCTAACTGACACAATCCTGGGTGAGATCCTCCGTGGGAATGGCT
GTACGCGTAAGATGCGATGCGGATAAAACATACCCGGGCACAAAACTCCA
CACCTTATGCTACTCAGCCAGGCCTCCAATCGGCGTCCCCTTGTACCAGA
ACATTGTGACAAAAAAAGGGGTCGCAGATGGTTCGTCCCTGTTCCACCTC
TGCACATACCTATCGTACCCCAATAAAATCCGACACCTCGCTGGCCACTT
CGAGTGGCCCACCCAAGGATCAAACCCGTTTCTCAATTCGAAAATCCCTC
GCCCAAACTCGTACCCTTCCATGCTAGATCCCAGCCTCATGCGACTTTAG
GTCGCCCTGTATGCTCTGGCCGTATCTCTTCCTCCTTGCTACCTCCAACT
TCTCCGAACTCATCCGTCATACCATCACTCGCTTCACGCTCTTGGTTCGA
TTGAACAT
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Coding sequence (CDS) from alignment at H-paniculata_contig35493:1559..2116+

>mRNA_H-paniculata_contig35493.9432.1 ID=mRNA_H-paniculata_contig35493.9432.1|Name=mRNA_H-paniculata_contig35493.9432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig35493:1559..2116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTACGCGTAAGATGCGATGCGGATAAAACATACCCGGGCACAAA
ACTCCACACCTTATGCTACTCAGCCAGGCCTCCAATCGGCGTCCCCTTGT
ACCAGAACATTGTGACAAAAAAAGGGGTCGCAGATGGTTCGTCCCTGTTC
CACCTCTGCACATACCTATCGTACCCCAATAAAATCCGACACCTCGCTGG
CCACTTCGAGTGGCCCACCCAAGGATCAAACCCGTTTCTCAATTCGAAAA
TCCCTCGCCCAAACTCGTACCCTTCCATGCTAGATCCCAGCCTCATGCGA
CTTTAGATGGCTGTACGCGTAAGATGCGATGCGGATAAAACATACCCGGG
CACAAAACTCCACACCTTATGCTACTCAGCCAGGCCTCCAATCGGCGTCC
CCTTGTACCAGAACATTGTGACAAAAAAAGGGGTCGCAGATGGTTCGTCC
CTGTTCCACCTCTGCACATACCTATCGTACCCCAATAAAATCCGACACCT
CGCTGGCCACTTCGAGTGGCCCACCCAAGGATCAAACCCGTTTCTCAATT
CGAAAATCCCTCGCCCAAACTCGTACCCTTCCATGCTAGATCCCAGCCTC
ATGCGACTTTAG
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