mRNA_H-paniculata_contig35238.9384.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35238.9384.1
Unique NamemRNA_H-paniculata_contig35238.9384.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35238.9384.1 vs. uniprot
Match: A0A6H5L606_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L606_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.450e-17
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 MDDYGLKDLVVAFRKDGRVQVPTEAGVGLEWRVEPGPTHLDTVYFEMV 144
            M D GL DLVV+F KDG VQ+P E GVGL+WRVEPGPTHLDT+YFEM+
Sbjct:  431 MVDLGLSDLVVSFLKDGTVQIPVEKGVGLQWRVEPGPTHLDTIYFEMI 478
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BLAST of mRNA_H-paniculata_contig35238.9384.1 vs. uniprot
Match: A0A7S2UV57_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV57_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.530e-7
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    7 DYGLKDLVVAFRKDGRVQVPTEAGVGLEWRVEPGPTHLDTVYFEM 141
            D  +   +V    DG V+V +E+G G+EW +EPGPTHLDTV F++
Sbjct:  249 DTEINQQIVYLNPDGTVKVDSESGEGIEWSLEPGPTHLDTVRFQV 293
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BLAST of mRNA_H-paniculata_contig35238.9384.1 vs. uniprot
Match: A0A4D9CMD2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMD2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.360e-6
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   31 VAFRKDGRVQVPTEAGVGLEWRVEPGPTHLDTVYFEM 141
            + FR+DG ++VP E G+   W  EPGPTHLDT+ FE+
Sbjct:  463 LVFRRDGTLRVPPELGMDGTWSFEPGPTHLDTIRFEL 499
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BLAST of mRNA_H-paniculata_contig35238.9384.1 vs. uniprot
Match: W7T252_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T252_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.360e-6
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   31 VAFRKDGRVQVPTEAGVGLEWRVEPGPTHLDTVYFEM 141
            + FR+DG ++VP E G+   W  EPGPTHLDT+ FE+
Sbjct:  475 LVFRRDGTLRVPPELGMDGTWSFEPGPTHLDTIRFEL 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35238.9384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L606_9PHAE1.450e-1775.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UV57_9STRA7.530e-748.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9CMD2_9STRA9.360e-654.05Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T252_9STRA9.360e-654.05Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35238contigH-paniculata_contig35238:724..867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue7.4e-15
Seed eggNOG ortholog2880.D7FNI2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2E0RS@1,2S85K@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_005350.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930089.5991652-CDS-H-paniculata_contig35238:723..8671622930089.5991652-CDS-H-paniculata_contig35238:723..867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35238 724..867 -
1691481141.5729616-CDS-H-paniculata_contig35238:723..8671691481141.5729616-CDS-H-paniculata_contig35238:723..867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35238 724..867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35238.9384.1prot_H-paniculata_contig35238.9384.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35238 724..867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35238.9384.1

>prot_H-paniculata_contig35238.9384.1 ID=prot_H-paniculata_contig35238.9384.1|Name=mRNA_H-paniculata_contig35238.9384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MDDYGLKDLVVAFRKDGRVQVPTEAGVGLEWRVEPGPTHLDTVYFEMV
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mRNA from alignment at H-paniculata_contig35238:724..867-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35238.9384.1 ID=mRNA_H-paniculata_contig35238.9384.1|Name=mRNA_H-paniculata_contig35238.9384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig35238:724..867- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACTACGGGCTCAAAGATCTCGTCGTGGCCTTCCGAAAAGACGG
GCGGGTGCAGGTGCCAACGGAGGCAGGAGTGGGGTTAGAGTGGCGGGTGG
AGCCGGGGCCGACGCACTTGGACACTGTCTACTTCGAGATGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig35238:724..867-

>mRNA_H-paniculata_contig35238.9384.1 ID=mRNA_H-paniculata_contig35238.9384.1|Name=mRNA_H-paniculata_contig35238.9384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig35238:724..867- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACTACGGGCTCAAAGATCTCGTCGTGGCCTTCCGAAAAGACGG
GCGGGTGCAGGTGCCAACGGAGGCAGGAGTGGGGTTAGAGTGGCGGGTGG
AGCCGGGGCCGACGCACTTGGACACTGTCTACTTCGAGATGGTAATGGAC
GACTACGGGCTCAAAGATCTCGTCGTGGCCTTCCGAAAAGACGGGCGGGT
GCAGGTGCCAACGGAGGCAGGAGTGGGGTTAGAGTGGCGGGTGGAGCCGG
GGCCGACGCACTTGGACACTGTCTACTTCGAGATGGTA
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