mRNA_H-paniculata_contig35232.9382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35232.9382.1
Unique NamemRNA_H-paniculata_contig35232.9382.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35232.9382.1 vs. uniprot
Match: A0A6H5JKV6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV6_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.170e-42
Identity = 92/181 (50.83%), Postives = 114/181 (62.98%), Query Frame = 1 
Query:    1 AFFIWGHGSDNELAYHTDRGALELSDILCSTELSVDADDDDAVTXXXXXXXXXXXXXXXAGDNTACVSSDPDYTYEYSAGA-LTLFWSIVDSDTAVSVKAVYDGEGYVAIGFSGNSRMPESDAVIGLPDEATALEYDIPSYRPPEEADQQELTSSAVTQSGGTTTLTFIRPLAPTGVDKQV 540
            A FIW +GS N   YH  RG   +SD+LCS  +  + DD +        X         A +N  C SSDPD+ YE +    L LFWS+V   T+VSVKAVY GEGY++IGFS +  MP SDAVIGLPDEATALEYD+ SY  PEEA  QE++++ +TQ  G TTLTF+R L P G  KQ+
Sbjct:  154 ATFIWAYGSSNTFQYHEARGDFTVSDLLCSEVVEEEDDDSEG------DXAADAADAEAAAEN--CASSDPDFEYEVAPHEDLALFWSVVG--TSVSVKAVYQGEGYLSIGFSDSGSMPGSDAVIGLPDEATALEYDMDSYGTPEEAADQEISNATITQVDGVTTLTFVRLLEPAGDGKQI 324
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BLAST of mRNA_H-paniculata_contig35232.9382.1 vs. uniprot
Match: A0A6H5K4J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.610e-22
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:  247 TLFWSIVDSDTA-VSVKAVYDGEGYVAIGFSGNSRMPESDAVIGLPDEATALEYDIPSYRPPEEADQQELTSSAVTQSGGTTTLTFIRPLAPTGVDKQV 540
            TL W+ VD+DT  ++V+AVY G G++AIG+S + RMP SDAVIGLP   T LEYD+P Y  P  +  QE++ + +TQ+GG TTL F+RPL P+G  KQ+
Sbjct:  139 TLSWT-VDTDTQEITVEAVYQGSGWLAIGWSDSGRMPGSDAVIGLPSAETVLEYDMPDYSTPSASAVQEISDATITQAGGVTTLKFVRPLEPSGDGKQL 236
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BLAST of mRNA_H-paniculata_contig35232.9382.1 vs. uniprot
Match: A0A7S2UHV0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHV0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.430e-13
Identity = 58/185 (31.35%), Postives = 89/185 (48.11%), Query Frame = 1 
Query:    7 FIWGHG-SDNELAYHTDRGALELSDILCSTELSVDAD-------DDDAVTXXXXXXXXXXXXXXXAGDNTACVSSDPDYTYEYSAGALTLFWSIVDSDTAVSVKAVYDGEGYVAIGFSGNSRMPESDAVIGLPDEATALEYDI----PSYRPPEEADQQELTSSAVTQSGGTTTLTFIRPLAPTG 525
            F+W  G +   L  HT+RG +E++    +   S   +       DDD V                       +    D   + S+G L+L WS V+ + +V++KA+YDG G+VAIG + N  M  ++AVIGLPDE T  +Y++     S   P E  Q  L  +++TQ+ G T L F + L  +G
Sbjct:  185 FLWAIGDASGVLGMHTERGGVEINFETVANLASKGKEGAGGTSTDDDRVISDGEDIVDIDDTLPVLNPTCPSIEDGYDSMVKLSSG-LSLHWSFVNGNKSVTMKAIYDGAGWVAIGVTPNGDMIGAEAVIGLPDEGTVQKYELNDKSTSSITPLEKGQDTLKGTSITQANGKTILKFEKILKESG 368
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35232.9382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JKV6_9PHAE3.170e-4250.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K4J1_9PHAE4.610e-2253.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UHV0_9STRA3.430e-1331.35Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35232contigH-paniculata_contig35232:772..2231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue3e-37
Seed eggNOG ortholog2880.D7G2R8
KEGG rclassRC00003,RC00035
KEGG koko:K00547
KEGG ReactionR00650
KEGG Pathwayko00270,ko01100,ko01110,map00270,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0012505,GO:0031410,GO:0031982,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
EggNOG free text desc.DOMON domain-containing protein
EggNOG OGsKOG4293@1,KOG4293@2759
Ec32 ortholog descriptionDOMON domain
Ec32 orthologEc-11_003250.1
EC2.1.1.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35232.9382.1prot_H-paniculata_contig35232.9382.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35232 772..2231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930089.4789588-CDS-H-paniculata_contig35232:771..8641622930089.4789588-CDS-H-paniculata_contig35232:771..864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35232 772..864 -
1691481141.5252626-CDS-H-paniculata_contig35232:771..8641691481141.5252626-CDS-H-paniculata_contig35232:771..864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35232 772..864 -
1622930089.500416-CDS-H-paniculata_contig35232:1198..13511622930089.500416-CDS-H-paniculata_contig35232:1198..1351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35232 1199..1351 -
1691481141.5351076-CDS-H-paniculata_contig35232:1198..13511691481141.5351076-CDS-H-paniculata_contig35232:1198..1351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35232 1199..1351 -
1622930089.5191915-CDS-H-paniculata_contig35232:1937..22311622930089.5191915-CDS-H-paniculata_contig35232:1937..2231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35232 1938..2231 -
1691481141.5425103-CDS-H-paniculata_contig35232:1937..22311691481141.5425103-CDS-H-paniculata_contig35232:1937..2231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35232 1938..2231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35232.9382.1

>prot_H-paniculata_contig35232.9382.1 ID=prot_H-paniculata_contig35232.9382.1|Name=mRNA_H-paniculata_contig35232.9382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
AFFIWGHGSDNELAYHTDRGALELSDILCSTELSVDADDDDAVTDDDSVV
TGDDDDVTAAGDNTACVSSDPDYTYEYSAGALTLFWSIVDSDTAVSVKAV
YDGEGYVAIGFSGNSRMPESDAVIGLPDEATALEYDIPSYRPPEEADQQE
LTSSAVTQSGGTTTLTFIRPLAPTGVDKQV
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mRNA from alignment at H-paniculata_contig35232:772..2231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35232.9382.1 ID=mRNA_H-paniculata_contig35232.9382.1|Name=mRNA_H-paniculata_contig35232.9382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1460bp|location=Sequence derived from alignment at H-paniculata_contig35232:772..2231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTTTTCATCTGGGGTCATGGGTCGGACAACGAGCTGGCGTACCACAC
AGACAGAGGCGCTCTCGAATTGTCGGATATATTGTGCAGCACTGAGCTGT
CGGTGGACGCCGACGATGATGATGCCGTCACGGACGATGATAGTGTCGTG
ACTGGTGATGATGATGATGTCACTGCCGCCGGCGACAACACTGCTTGCGT
CAGCTCCGACCCGGATTACACGTACGAGTATTCGGCCGGAGCGTTGACGT
TGTTCTGGAGCATCGTGGACTCGGATACTGCTGTGTCCGTCAAGGTGTGG
TGGTGGTCGTGCTGGGTTTCTCGCTACAGCAGGGTTTCTTTTTTCTTGTT
TTTTTTTTTGCTTTTCCTTTTTCGAACTGGCGCGTACAACATAATTGCTT
TGAAAATAACGTGAGGGAATGGACTGTTGATAGGGTGCATCCCGAAGTGG
GCAACACCTTCGTGAAAAAAAATCAACCTGTCGGGGGTGCAATCGTGCGA
AGCGATGATCTGTGCGGAAGCAATGGTTTCAGGGTTTGATTCATGAGAGC
TATTTTTCTGTTCGTCTTTTTGAGTTTTCGATTCTGCCCCTTCACCGCAC
TTGTCTCCTTCATTTATTCCCTCACCACCCCCTTTCCGCTGTCTGATATA
GACAGGATACTGTCAAAGCCTTGTCAAGTCTTGTATGACGACCCGAGGTC
CCCTCTCCTGTACCAAACAAAATCCTGCATGGTTCACCAGTTGAGCCATA
CCAAAGATGACCTAGCCTATCCTCCTGGTGATGACCCACCCTCCCTCACC
AGCTCTAGTTGCGCTTTCTTTCCCTGATCCTGAATGGTACGTGTGCTGGA
AAATAACCATGACTGTATTCTCTTGTAAAGGCTGTTTATGATGGTGAGGG
ATACGTGGCCATCGGATTTTCAGGCAACTCCAGGATGCCGGAGTCAGACG
CTGTTATCGGACTCCCTGACGAGGCGACGGCCCTGGAGTATGACATACCC
AGTTACCGCCCCCCAGAAGAGGCGGATCAGCAGGTGAGAGTCAGTTGGAA
AAAGGTGGAGGGTTTGGAGGGTTCGGAGGGAAGAAGAACTAACAGCAAAA
AAAAAAAAGGATCGTTGGATGTTGAGTTACGGTGAAACCGACTGCACTGG
GTTTGGTTGCCTGCTTGGACAGCGGGGCGAGCACTTTTTGTTTTATCTTG
TTTCAGGTCGGGGTTGATCGGTTTGTCGAGACGGACGCCGAGTTAAGAAT
GCTGACTCCGTCCCTTCGTTGCTCCCTTTCTCGCTCCCTCCGTCGGGTGA
TCGTTGATCGTTGATCGTTGATCGTTGATCGTTGATCGTTAAACTGTTTG
TGAAACGTATGATACAGGAGCTGACAAGCTCTGCGGTTACTCAATCGGGT
GGAACTACCACCCTCACATTCATACGGCCTCTAGCACCGACAGGGGTTGA
CAAGCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig35232:772..2231-

>mRNA_H-paniculata_contig35232.9382.1 ID=mRNA_H-paniculata_contig35232.9382.1|Name=mRNA_H-paniculata_contig35232.9382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig35232:772..2231- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTTTTCATCTGGGGTCATGGGTCGGACAACGAGCTGGCGTACCACAC
AGACAGAGGCGCTCTCGAATTGTCGGATATATTGTGCAGCACTGAGCTGT
CGGTGGACGCCGACGATGATGATGCCGTCACGGACGATGATAGTGTCGTG
ACTGGTGATGATGATGATGTCACTGCCGCCGGCGACAACACTGCTTGCGT
CAGCTCCGACCCGGATTACACGTACGAGTATTCGGCCGGAGCGTTGACGT
TGTTCTGGAGCATCGTGGACTCGGATACTGCTGTGTCCGTCAAGGCGTTT
TTCATCTGGGGTCATGGGTCGGACAACGAGCTGGCGTACCACACAGACAG
AGGCGCTCTCGAATTGTCGGATATATTGTGCAGCACTGAGCTGTCGGTGG
ACGCCGACGATGATGATGCCGTCACGGACGATGATAGTGTCGTGACTGGT
GATGATGATGATGTCACTGCCGCCGGCGACAACACTGCTTGCGTCAGCTC
CGACCCGGATTACACGTACGAGTATTCGGCCGGAGCGTTGACGTTGTTCT
GGAGCATCGTGGACTCGGATACTGCTGTGTCCGTCAAGGCTGTTTATGAT
GGTGAGGGATACGTGGCCATCGGATTTTCAGGCAACTCCAGGATGCCGGA
GTCAGACGCTGTTATCGGACTCCCTGACGAGGCGACGGCCCTGGAGTATG
ACATACCCAGTTACCGCCCCCCAGAAGAGGCGGATCAGCAGGCTGTTTAT
GATGGTGAGGGATACGTGGCCATCGGATTTTCAGGCAACTCCAGGATGCC
GGAGTCAGACGCTGTTATCGGACTCCCTGACGAGGCGACGGCCCTGGAGT
ATGACATACCCAGTTACCGCCCCCCAGAAGAGGCGGATCAGCAGGAGCTG
ACAAGCTCTGCGGTTACTCAATCGGGTGGAACTACCACCCTCACATTCAT
ACGGCCTCTAGCACCGACAGGGGTTGACAAGCAGGTAGAGCTGACAAGCT
CTGCGGTTACTCAATCGGGTGGAACTACCACCCTCACATTCATACGGCCT
CTAGCACCGACAGGGGTTGACAAGCAGGTA
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