mRNA_H-paniculata_contig3523.9381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI) HSP 1 Score: 283 bits (724), Expect = 2.510e-82 Identity = 139/226 (61.50%), Postives = 175/226 (77.43%), Query Frame = 3
Query: 3189 MSKVKQRDWRLFRAKLINQFASENGDSKLEWGDGNWAHELVHVEPGCLLLATEQIWDPPFRQSVVLVLSHD-EHGSVGLVLNQPGPQRVSTLAGLKPDLAEVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPG-VYSGGFDSLVQRARHGLVVKDRVRFIHGHSAWTPGQLQRELDDNMWFVAAAAPELVTAGCDRPINPLWGQVLSLMGGRYQRVARRNGP 3860
+S+VK RDWRLFR LI ++ + G K W DG WAH++ VE GCLL+ATE+I F QSV+LVLSH + G++GL+LN+PGPQR+ +L GL+PDLAEVFG+S VF GGP+GLG+MTV+H +EGS+ VL G V++GGFD+LV R G V KDRVRF+HGHSAW+PGQLQ ELD N WFVAAAAPEL+T CD+P +PLW ++L LMGG+YQ VA+RN P
Sbjct: 87 LSEVKGRDWRLFRKNLITRYGEDIG--KDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHDAN-VEGSDPVLDGGVFAGGFDTLVDVTRQGTVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWTKLLRLMGGKYQEVAKRNEP 309
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: A0A836CNM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM8_9STRA) HSP 1 Score: 198 bits (503), Expect = 4.240e-53 Identity = 105/229 (45.85%), Postives = 141/229 (61.57%), Query Frame = 3
Query: 3198 VKQRDWRLFRAKLINQFASEN--GDS-----KLEWGDGNWAHELVHVEPGCLLLATEQIWDPPFRQSVVLVLSHDEH-GSVGLVLNQPGPQRVSTLAGLKPDLAEVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPGVYSGGFDSLVQRARHGLVVKDRVRFIHGHSAWTPGQLQRELDDNMWFVAAAAPELVTAG--CDRPINPLWGQVLSLMGGRYQRVARRN 3854
VKQ DWR FRA L+ + E G S + +W D WAHE+ VE GC+LLA E + F Q+ VLVL HD++ G++GL+LN+P +R++ + GL D+ FG+ V GGPVG G MT +H + G + + PG+Y GGF+ LV+ A+ G V +R HGH+AW PGQL REL + W++AAAAP LVT R + +W Q+L LMGG Y VARRN
Sbjct: 52 VKQLDWRAFRANLVRRSREEGFGGSSAXXXARRKWRDDAWAHEIGVVEKGCVLLAHETL-QGVFHQTAVLVLDHDDNAGTLGLILNRPTKRRIAGVPGLGRDMQAAFGQCAVHYGGPVGAGGMTALHGVKQARGGQEIAPGLYVGGFEDLVRLAQEGRVDGSSLRLAHGHAAWGPGQLSRELRADFWYLAAAAPALVTGAGAAGRAPSRMWHQLLDLMGGSYAEVARRN 279
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: A0A5J4YWW8_PORPP (UPF0301 protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWW8_PORPP) HSP 1 Score: 150 bits (380), Expect = 6.760e-36 Identity = 89/261 (34.10%), Postives = 134/261 (51.34%), Query Frame = 3
Query: 3186 QMSKVKQRDWRLFRAKLINQFASENGDS------------------KLEWGD--------------GNWAHELVHVEPGCLLLATEQIWDPP---FRQSVVLVLSHDEHGSVGLVLNQP---GPQRVSTLAGLKPDLAEVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPGVYSGGFDSLVQRARHGLVVK-DRVRFIHGHSAWTPGQLQRELDDNMWFVAAAAPELVTAGCDRPINPLWGQVLSLMGGRYQRVARR 3851
+M + ++ DWR FRA+L+ S G ++E G+ G WAHE+ E GCLLLA + F Q+V+ ++ H+ GS+G +LN+P V + L +F S V+ GG V G+ +V+H L S V+ GVY+GG + LV R G V D VRF G+ W+PGQL+RE+ D +W++AA +P+++TA C + PLW QVL LMGG++ +A++
Sbjct: 87 RMGEEQEADWRAFRARLVAAERSGAGSQAQQEEDTGSGSARGKQQGRIEEGNSSQQDTGVGVGVDSGRWAHEVAVPERGCLLLAAPVRFSAQQSYFVQAVICIVEHNSSGSIGFILNRPLTYSMDGVELEGSVGKQLKVLFTSSPVYMGGDVSTGTFSVIHKVPDLPDSVEVVKGVYAGGLEGLVTRKLEGKPVDADCVRFFSGYCGWSPGQLEREIQDGVWYLAACSPDIITAPCIQLKRPLWRQVLDLMGGKFAILAKK 347
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: A0A835Z6U1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U1_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.960e-33 Identity = 104/313 (33.23%), Postives = 143/313 (45.69%), Query Frame = 3
Query: 3198 VKQRDWRLFRAKLINQFASEN-GDSKLEWGDGNWAHELVHVEPGCLLLATEQIWDPPFRQSVVLVLSHDE-HGSVGLVLNQPGPQRVSTLAGLKPDLAEVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPGVYSGGFDSLVQRA------------------------------RHGLVVK------DRVRFIHGHSAWTPGQ---------------------LQRELDDNMWFVAAAAPELVTAGCD--RPINPLWGQV-----------------LSLMGG----RYQRVARRNGPFA**HVSLSL 3890
VK +DWR FRA L+ + A E G W G WAH++ VE GC+LLA E + + F Q+VVL+L HD+ G++GL++N+P +R++ + GL D+ FG+ V GGPVG G MT +H+ +G + V P VY GG + LV+ A R G V + +R GH+AW PGQ L+REL N W+VA+AAPEL+T + + +W Q+ LSL G R QRV R H SL L
Sbjct: 62 VKSKDWRAFRANLVRRSAEEGFGAPHRGWSGGKWAHDIGCVEKGCVLLAHESL-EGVFYQTVVLILDHDDTRGTLGLIINRPTKKRIAGVPGLGRDVQRAFGDCPVLYGGPVGAGGMTALHSAGEAKGCQEVAPSVYVGGLEGLVRLAQEATPWSVVRRIAALLWRRLVNLGGKGRALRSGGVAQRGHAHGSTLRLAVGHAAWVPGQEKETASNTQAPAPLGAERLRHLKRELRANFWYVASAAPELITGPFTSAKQTSSMWHQLVLHFFELGFHGLYRRMRLSLRAGFARTRIQRVRRPGSLMRGGHASLIL 373
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: A0A6V0YDC5_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0YDC5_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.950e-32 Identity = 74/196 (37.76%), Postives = 113/196 (57.65%), Query Frame = 3
Query: 3294 WAHELVHVEPGCLLLATEQIWDPPFRQSVVLVLSHDEH-GSVGLVLNQPGPQRVSTLAG-----LKPDLAEVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPGVYSGGFDSLVQRARHGLVVKDRVRFIHGHSAWTPGQLQRELDDNMWFVAAAAPELVTAGCDRPINP------LWGQVLSLMGGRYQRVA 3845
WAH L HVEPGC+L+A E++ F Q+VVL++ H+E+ GS G+V+N+P P + +A + L F ++ V GGPV + +H + GS+ V PGV+ GG L+Q R + V F+ GH+AW PGQL RE++ +W++AAA+ +L+ P++ LW VLS MG +Y+ +A
Sbjct: 197 WAHPLYHVEPGCILIANEKLGGV-FHQTVVLIIDHNENTGSTGMVINRPFPGNLIKIASDTDSNIDLSLKMAFSKAPVSYGGPVMQDQFSTLHGFGEVMGSKKVCPGVFVGGSSQLMQEVRRNHLHPTEVLFVKGHAAWVPGQLTREIEKGVWYIAAASADLILRYAGAPVSKDDNASDLWADVLSCMGEKYEDIA 391
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: A0A1Z5J8D6_FISSO (Putative transcriptional regulator n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8D6_FISSO) HSP 1 Score: 140 bits (353), Expect = 3.790e-32 Identity = 78/206 (37.86%), Postives = 116/206 (56.31%), Query Frame = 3
Query: 3267 SKLEWGDGNWAHELVHVEPGCLLLATEQIWDPPFRQSVVLVLSHDEH-GSVGLVLNQP---GPQRVSTLAGLKPDLA--EVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPGVYSGGFDSLVQRARHGLVVKDRVRFIHGHSAWTPGQLQRELDDNMWFVAAAAPELVTAGCDRPINP------LWGQVLSLMGGRYQRVAR 3848
SK++ WAHE+ HVEPGC+LLA E++ F Q+VVLV+ HDE GS+G+V+N+P Q+V++ A DL+ F +S V GGPV ++V+H +EGS + PGVY GG + L+ R F+ GH+AW PGQL RE+ +W+ AA + +L+ + LW +L +GG+Y ++R
Sbjct: 157 SKVKINKHRWAHEIPHVEPGCVLLANEKLGGV-FHQTVVLVVQHDEKTGSIGIVINRPLEGDLQKVASQANCNLDLSLKMAFSKSPVSYGGPVLQEELSVIHGFGEVEGSTKLCPGVYVGGSEELMNEVRINRFDPHHALFVKGHAAWVPGQLSREIKKGVWYTAAVSSDLILRYAGAMVTEEDNAADLWSDILMCLGGKYAEISR 361
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: B7G677_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G677_PHATC) HSP 1 Score: 136 bits (342), Expect = 1.600e-30 Identity = 73/199 (36.68%), Postives = 108/199 (54.27%), Query Frame = 3
Query: 3294 WAHELVHVEPGCLLLATEQIWDPPFRQSVVLVLSHDEH-GSVGLVLNQPGPQRVSTLAG-----LKPDLAEVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPGVYSGGFDSLVQRARHGLVVKDRVRFIHGHSAWTPGQLQRELDDNMWFVAAAAPELVTAGCDRPI------NPLWGQVLSLMGGRYQRVARRN 3854
WAHE+ HVEPGC+L+A E++ F Q+VVL++ H E GS G+V+N+P + +A L L F ++ V GGPV +V+H +EGS + PGVY GG + L+ R F+ GH+ W PGQL RE+ +W+ AAA+ + + P+ N LW +LS MGG Y ++A ++
Sbjct: 186 WAHEISHVEPGCVLIANEKLGGV-FHQTVVLIIDHHETTGSTGIVINRPMDGDLLKIASEQESSLDLSLKLAFSQARVTYGGPVLTDEFSVLHGFGEVEGSRKLCPGVYIGGSEELMNEVRTLRFDPAHALFVKGHAGWVPGQLTREISKGVWYTAAASSDFILRYAGAPVTEDDNANDLWADILSCMGGNYAKIAGKH 383
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: A0A250X9J3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X9J3_9CHLO) HSP 1 Score: 133 bits (334), Expect = 7.740e-30 Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 3
Query: 3210 DWRLFRAKLINQFASENGDSKL---EWGDGN----------WAHELVHVEPGCLLLATEQIWDPP---FRQSVVLVLSHDEHGSVGLVLNQPGPQRVSTLAGLKPDLAEVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPGVYSGGFDSLVQRARHGLVVKDRVRFIHGHSAWTPGQLQRELDDNMWFVAAAAPELVTA---GCDRPINP---LWGQVLSLMGGRYQRVA 3845
DWR FRA+L+ Q + D+ + D N WAH + E G LLLA +++ F Q+V+L+L HDE GS+G++LN+P + L +P + + F ++ GG VG M ++H+ + L+G + V+ GVY GG + + G D R+ G++ W PGQLQ E +WF AA +P+L+ G R + W QVL LMGG Y++++
Sbjct: 98 DWRTFRARLVAQERMSSEDTSALTTDIDDVNPQGLMEHGSLWAHSIALPERGALLLAHPLMFEQSQQYFHQAVILLLDHDETGSIGVILNRPSDYNLGKLVLSEPQMGQ-FDSCRLYVGGDVGDNRMQMLHSIQELQGCKEVVKGVYMGGIEGARSKVVAGEATADDFRWYAGYAGWGPGQLQSECKRGVWFTAAGSPDLILQRPDGSKRDPSSGKDYWHQVLQLMGGDYKKLS 330
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: A0A383VTF1_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VTF1_TETOB) HSP 1 Score: 130 bits (327), Expect = 1.580e-29 Identity = 79/238 (33.19%), Postives = 115/238 (48.32%), Query Frame = 3
Query: 3210 DWRLFRAKLINQFASENGDSKLEW--------------GDGNWAHELVHVEPGCLLLATEQIWDPP-FRQSVVLVLSHDEHGSVGLVLNQPGPQRVST--------LAGLKPDLAEVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPGVYSGGFDSLVQRARHGLVVKDRVRFIHGHSAWTPGQLQRELDDNMWFVAAAAPELVTAGCDRPINPLWGQVLSLMGGRYQRVARRN 3854
DWR FRAKL+ N S++ G+ WAH E G LLLA+ + D + Q+VVL++ H GSVGL+LN+P ++ + G + + F ES V+ GG V ++H LEGS ++ PGVY GG + V+ GL+ D +F G W +LQ+E+D W+ AA + L + PLW +VL LMGG Y +A+ +
Sbjct: 50 DWREFRAKLVADAGKVNWASRVSEENSRLLQVQNPSLAGEETWAHATAQPEVGGLLLASRDVPDTDKYWQAVVLLVQHSPAGSVGLILNRPSSLKLGVGRGGLKFAIIGAPAGMQDTFAESRVYCGGMVRQDVFHILHG-HNLEGSVALAPGVYVGGEAAAVKAVAGGLIAADNFKFFCGAMVWEGSELQQEIDKGKWYTAAGSRNLCLKQVLQLPEPLWREVLGLMGGEYASMAKED 286
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Match: K0TQD3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQD3_THAOC) HSP 1 Score: 129 bits (323), Expect = 4.360e-28 Identity = 68/196 (34.69%), Postives = 109/196 (55.61%), Query Frame = 3
Query: 3294 WAHELVHVEPGCLLLATEQIWDPPFRQSVVLVLSHDEH-GSVGLVLNQPGPQRVSTLAG-----LKPDLAEVFGESLVFAGGPVGLGSMTVMHATEGLEGSESVLPGVYSGGFDSLVQRARHGLVVKDRVRFIHGHSAWTPGQLQRELDDNMWFVAAAAPELVTAGCDRPI------NPLWGQVLSLMGGRYQRVA 3845
WAH L H+EPG LL+A E++ F Q+VVL++ H+E GS G+V+N+P P + +A + L F ++ V GGPV + +H + GS+ + PGV+ GG L+ R + V F+ GH+AW PGQL RE++ +W++AAA+ +L+ P+ + LW +L MG +++ +A
Sbjct: 181 WAHPLSHIEPGSLLVANEKLGGV-FHQTVVLIIDHNESTGSTGMVINRPFPGDLIKIASETESNIDLSLKMTFSKAPVAYGGPVMQDQFSTLHGFGEVMGSKKICPGVFVGGSSQLMNEVRRTNLRPTEVLFVKGHAAWVPGQLSREIEKGVWYIAAASSDLILRYAGAPMKKGDNTSDLWADILLCMGDKFESIA 375 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3523.9381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3523.9381.1 >prot_H-paniculata_contig3523.9381.1 ID=prot_H-paniculata_contig3523.9381.1|Name=mRNA_H-paniculata_contig3523.9381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=235bp MTFPLPPQMSKVKQRDWRLFRAKLINQFASENGDSKLEWGDGNWAHELVHback to top mRNA from alignment at H-paniculata_contig3523:1848..14175+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3523.9381.1 ID=mRNA_H-paniculata_contig3523.9381.1|Name=mRNA_H-paniculata_contig3523.9381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12328bp|location=Sequence derived from alignment at H-paniculata_contig3523:1848..14175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3523:1848..14175+ >mRNA_H-paniculata_contig3523.9381.1 ID=mRNA_H-paniculata_contig3523.9381.1|Name=mRNA_H-paniculata_contig3523.9381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at H-paniculata_contig3523:1848..14175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |