mRNA_H-paniculata_contig35227.9380.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35227.9380.1
Unique NamemRNA_H-paniculata_contig35227.9380.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: A0A6H5JJC7_9PHAE (MHD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJC7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 7.550e-38
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMPDCKFGLNDKLIMERD  ARGR DRRP+VALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR
Sbjct:  210 GMPDCKFGLNDKLIMERDGNARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 275
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BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: B7FSB1_PHATC (Predicted protein n=2 Tax=Naviculales TaxID=38748 RepID=B7FSB1_PHATC)

HSP 1 Score: 117 bits (294), Expect = 6.830e-30
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMP+CKFGLNDKL++E+D     + DR+PSV +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMR
Sbjct:  208 GMPECKFGLNDKLVIEKD-----KEDRKPSVDIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMR 268
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BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: A0A482SRR2_9ARCH (MHD domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRR2_9ARCH)

HSP 1 Score: 111 bits (278), Expect = 7.590e-30
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMP+CKFGLNDKLIM+++       + +  V LDDCTFHRCV+LGKFDADRTITFIPP+GEFELMR
Sbjct:   91 GMPECKFGLNDKLIMDKEGGGAANTNAQGGVELDDCTFHRCVKLGKFDADRTITFIPPDGEFELMR 156
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BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: A0A7S2YSX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSX5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.610e-29
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMP+CKFGLNDKL+++++     + DR+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMR
Sbjct:  208 GMPECKFGLNDKLVIDKE-----KEDRKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMR 268
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BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: A0A6V1NZE4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NZE4_HETAK)

HSP 1 Score: 115 bits (288), Expect = 5.470e-29
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVARGRP---DRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMP+C+FGLNDKLIMERD+ A  R     ++  VA+DDCTFHRCVRLGKFDADRTITF+PP+GEFELMR
Sbjct:  209 GMPECRFGLNDKLIMERDSSASARAVHGAKKGGVAIDDCTFHRCVRLGKFDADRTITFVPPDGEFELMR 277
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BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: A0A7S0AFK6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AFK6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.360e-29
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMP+CKFGLNDKL++E+++       R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMR
Sbjct:   30 GMPECKFGLNDKLVIEKESSNM----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMR 91
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BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: A0A835Z9G3_9STRA (Clathrin assembly complex, medium subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.800e-28
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVAR--GRPDR----RPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMP+CKFGLNDKLIME++A+ R  GR       + SV LDDCTFHRCVRLGKFDADRTITFIPP+GEFELMR
Sbjct:  225 GMPECKFGLNDKLIMEKEALERAGGRTAATAHGKRSVELDDCTFHRCVRLGKFDADRTITFIPPDGEFELMR 296
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BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: A0A7S2MKC8_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2MKC8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.350e-28
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMP+CKFGLNDKL++E+++  +    R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMR
Sbjct:  246 GMPECKFGLNDKLVIEKESSGQ----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMR 307
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BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: A0A7S4HKQ6_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HKQ6_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.350e-28
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMP+CKFGLNDKL++++++ A+    R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMR
Sbjct:  248 GMPECKFGLNDKLVIDKESGAQ----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMR 309
[Close]
BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Match: A0A7S1VT68_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VT68_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.970e-28
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 GMPDCKFGLNDKLIMERDAVARGRPDRRPSVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMR 198
            GMP+CKFGLNDKL++ER+        R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMR
Sbjct:  239 GMPECKFGLNDKLVIEREESGA----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMR 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35227.9380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJC7_9PHAE7.550e-3893.94MHD domain-containing protein n=2 Tax=Ectocarpus T... [more]
B7FSB1_PHATC6.830e-3077.27Predicted protein n=2 Tax=Naviculales TaxID=38748 ... [more]
A0A482SRR2_9ARCH7.590e-3071.21MHD domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S2YSX5_9STRA4.610e-2972.73Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A6V1NZE4_HETAK5.470e-2973.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0AFK6_9STRA7.360e-2972.73Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A835Z9G3_9STRA4.800e-2875.00Clathrin assembly complex, medium subunit n=1 Tax=... [more]
A0A7S2MKC8_9STRA5.350e-2872.73Hypothetical protein n=4 Tax=Bacillariophyta TaxID... [more]
A0A7S4HKQ6_9STRA5.350e-2872.73Hypothetical protein n=3 Tax=Odontella aurita TaxI... [more]
A0A7S1VT68_9STRA6.970e-2874.24Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35227contigH-paniculata_contig35227:986..1186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue6.5e-30
Seed eggNOG ortholog2880.D8LRL7
Preferred nameAP2M1
KEGG koko:K11826
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0002090,GO:0002092,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005905,GO:0006403,GO:0006807,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0006900,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009987,GO:0010008,GO:0010171,GO:0010604,GO:0010646,GO:0010647,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016055,GO:0016185,GO:0016192,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019904,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030100,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030163,GO:0030424,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031201,GO:0031323,GO:0031325,GO:0031410,GO:0031623,GO:0031982,GO:0032501,GO:0032502,GO:0032535,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033227,GO:0033267,GO:0033365,GO:0034381,GO:0034383,GO:0034613,GO:0035567,GO:0036019,GO:0036020,GO:0036465,GO:0042277,GO:0042886,GO:0042995,GO:0043005,GO:0043112,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044325,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0045334,GO:0045807,GO:0046907,GO:0048002,GO:0048013,GO:0048259,GO:0048260,GO:0048475,GO:0048488,GO:0048489,GO:0048518,GO:0048519,GO:0048522,GO:0048856,GO:0050657,GO:0050658,GO:0050690,GO:0050708,GO:0050714,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0060071,GO:0060255,GO:0060341,GO:0060627,GO:0061024,GO:0061356,GO:0061357,GO:0061512,GO:0065003,GO:0065007,GO:0065008,GO:0070142,GO:0070201,GO:0070325,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072583,GO:0090066,GO:0090087,GO:0090175,GO:0097006,GO:0097458,GO:0097479,GO:0097480,GO:0097494,GO:0097499,GO:0097708,GO:0097718,GO:0098588,GO:0098590,GO:0098657,GO:0098693,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099003,GO:0099503,GO:0099504,GO:0120025,GO:0120038,GO:0150034,GO:0198738,GO:1900242,GO:1900244,GO:1901564,GO:1901565,GO:1901575,GO:1903076,GO:1903077,GO:1903421,GO:1903423,GO:1903530,GO:1903532,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1904951,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990075,GO:2000026,GO:2000027
EggNOG free text desc.endocytosis
EggNOG OGsKOG0938@1,KOG0938@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size201
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.9959896-CDS-H-paniculata_contig35227:985..11831622930088.9959896-CDS-H-paniculata_contig35227:985..1183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35227 986..1183 -
1691481141.4032094-CDS-H-paniculata_contig35227:985..11831691481141.4032094-CDS-H-paniculata_contig35227:985..1183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35227 986..1183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930089.0086033-UTR-H-paniculata_contig35227:1183..11861622930089.0086033-UTR-H-paniculata_contig35227:1183..1186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35227 1184..1186 -
1691481141.414367-UTR-H-paniculata_contig35227:1183..11861691481141.414367-UTR-H-paniculata_contig35227:1183..1186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35227 1184..1186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35227.9380.1prot_H-paniculata_contig35227.9380.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35227 986..1183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35227.9380.1

>prot_H-paniculata_contig35227.9380.1 ID=prot_H-paniculata_contig35227.9380.1|Name=mRNA_H-paniculata_contig35227.9380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MPDCKFGLNDKLIMERDAVARGRPDRRPSVALDDCTFHRCVRLGKFDADR
TITFIPPEGEFELMR*
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mRNA from alignment at H-paniculata_contig35227:986..1186-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35227.9380.1 ID=mRNA_H-paniculata_contig35227.9380.1|Name=mRNA_H-paniculata_contig35227.9380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig35227:986..1186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTATGCCCGACTGTAAATTCGGGTTAAACGATAAGTTGATCATGGAGCG
CGACGCGGTAGCGCGAGGACGGCCCGACCGGAGACCGTCGGTCGCGTTGG
ACGACTGCACTTTCCATCGCTGCGTTCGGCTGGGCAAGTTCGACGCAGAC
CGGACGATCACCTTCATCCCGCCGGAGGGAGAGTTTGAGTTGATGCGGTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig35227:986..1186-

>mRNA_H-paniculata_contig35227.9380.1 ID=mRNA_H-paniculata_contig35227.9380.1|Name=mRNA_H-paniculata_contig35227.9380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig35227:986..1186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGACTGTAAATTCGGGTTAAACGATAAGTTGATCATGGAGCGCGA
CGCGGTAGCGCGAGGACGGCCCGACCGGAGACCGTCGGTCGCGTTGGACG
ACTGCACTTTCCATCGCTGCGTTCGGCTGGGCAAGTTCGACGCAGACCGG
ACGATCACCTTCATCCCGCCGGAGGGAGAGTTTGAGTTGATGCGGTGAAT
GCCCGACTGTAAATTCGGGTTAAACGATAAGTTGATCATGGAGCGCGACG
CGGTAGCGCGAGGACGGCCCGACCGGAGACCGTCGGTCGCGTTGGACGAC
TGCACTTTCCATCGCTGCGTTCGGCTGGGCAAGTTCGACGCAGACCGGAC
GATCACCTTCATCCCGCCGGAGGGAGAGTTTGAGTTGATGCGGTGA
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