mRNA_H-paniculata_contig3522.9379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3522.9379.1
Unique NamemRNA_H-paniculata_contig3522.9379.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3522.9379.1 vs. uniprot
Match: D8LKJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ3_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.210e-24
Identity = 70/140 (50.00%), Postives = 94/140 (67.14%), Query Frame = 1 
Query:    1 MGHTRRQRDKEHAARLALLTKQLEEERERNSTVVAQEREDGEARVRAAQEGHELWKKAHQDEIAATGEREIARTAARLRRDAEQHARSIEESLEAEYFDRHSATIAERDKHAAEAAASQNKSSRLEADVRRLEAQVAEAA 420
            +  ++R+R+++HA  LA L ++LEEERER    V              QE  ELW KAH+DE AA  +REIART ARLRRD+EQHA S++E+LEA Y DR +A + + ++ AA  + +Q K+ RLEA  RRLEAQ+AEAA
Sbjct:  139 LSDSQRERERQHARSLANLKERLEEERERTRAAVVXXXXXXXXXXXXXQEAQELWAKAHRDESAAAAKREIARTTARLRRDSEQHASSVKETLEAAYADRMAAALEKSEESAALLSTAQKKAFRLEATTRRLEAQLAEAA 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3522.9379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKJ3_ECTSI2.210e-2450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3522contigH-paniculata_contig3522:4403..6269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003170.1
Exons4
Model size420
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3522.9379.1prot_H-paniculata_contig3522.9379.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3522 4403..6269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.9058473-CDS-H-paniculata_contig3522:4402..44461622930088.9058473-CDS-H-paniculata_contig3522:4402..4446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 4403..4446 -
1691481141.3611822-CDS-H-paniculata_contig3522:4402..44461691481141.3611822-CDS-H-paniculata_contig3522:4402..4446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 4403..4446 -
1622930088.9226768-CDS-H-paniculata_contig3522:4768..49261622930088.9226768-CDS-H-paniculata_contig3522:4768..4926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 4769..4926 -
1691481141.3709228-CDS-H-paniculata_contig3522:4768..49261691481141.3709228-CDS-H-paniculata_contig3522:4768..4926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 4769..4926 -
1622930088.9395845-CDS-H-paniculata_contig3522:5578..56461622930088.9395845-CDS-H-paniculata_contig3522:5578..5646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 5579..5646 -
1691481141.3799884-CDS-H-paniculata_contig3522:5578..56461691481141.3799884-CDS-H-paniculata_contig3522:5578..5646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 5579..5646 -
1622930088.9548912-CDS-H-paniculata_contig3522:6119..62691622930088.9548912-CDS-H-paniculata_contig3522:6119..6269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 6120..6269 -
1691481141.3906517-CDS-H-paniculata_contig3522:6119..62691691481141.3906517-CDS-H-paniculata_contig3522:6119..6269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 6120..6269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3522.9379.1

>prot_H-paniculata_contig3522.9379.1 ID=prot_H-paniculata_contig3522.9379.1|Name=mRNA_H-paniculata_contig3522.9379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MGHTRRQRDKEHAARLALLTKQLEEERERNSTVVAQEREDGEARVRAAQE
GHELWKKAHQDEIAATGEREIARTAARLRRDAEQHARSIEESLEAEYFDR
HSATIAERDKHAAEAAASQNKSSRLEADVRRLEAQVAEAA
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mRNA from alignment at H-paniculata_contig3522:4403..6269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3522.9379.1 ID=mRNA_H-paniculata_contig3522.9379.1|Name=mRNA_H-paniculata_contig3522.9379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1867bp|location=Sequence derived from alignment at H-paniculata_contig3522:4403..6269- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCATACCCGTAGACAAAGGGACAAAGAGCACGCGGCGCGCCTAGC
GCTGCTCACGAAGCAGTTGGAAGAAGAGCGGGAGCGCAATTCTACGGTCG
TGGCGCAGGAGAGAGAAGACGGGGAGGCTCGCGTGAGAGCGGCGCAAGAG
GTAGAAAATTACAGACGATACACACCGCAAAAGGTTGTCGGTATCAGCGC
TGCAGCTCTTCGGGGTTAGAACACTTCGGCAGGCTCGCGTCGAAGCACAA
CCCTGACACAGGATTAACTTTTCGTTGGGGCAGCTGTGTTGCACGGTCTC
ACGGAGCTGACATTTTGCTGCTGTTGAGGCAGACACTCACCTTGTCAAAT
CAAAACTGAACATAGAGCGACTGTAGCGGCTGGTTACTACCAGACTTCTC
GAGGCGAATAGTTTTGACGTGGGAGTACCTTTACTCGGGCAAGGTAGCGT
TTTCCTGTAAGTCTTCGGCGGTTGCTAAAGAAACTGCTGCGGACTCGAGA
TTTTGCGGATGAATGCTGTAGCATGGCGTAAACACAAATACACGTATGAC
GGTTCTCTGTCATGCTACAAAATACAATATCCACAAGCTGCAAACCGACG
TGACCAAACATGCACACCTGCAGGGACATGAATTGTGGAAGAAAGCGCAC
CAAGACGAGATCGCGGCCACCGGCGAACGCGAGATCGCCAGGTTTGCTAC
CTCCACCGTCACTATTCGATTGTCTTTCTGTAGCCCCCAATAAACACGCG
CACCGTTTATTCATAGTTTGGTTTTGAGCTTCACCGTGACGCGTTGAGGT
GTACGATTACGAAAGGCTGATCAAGGTCCTCTGAGTATCGATTACGGGGT
TTTTTCTACTTACGAGCACATACCGTGACCAACAATCAAGATGTTATGCA
CTGACGATTACCAGAAACGAAGTCCCTATGTTTATTATCTAACCTGTCGG
TGTCGTGCACCTATTCTCGATGATGATGGGAACAGTCCGTCAAAACAGAG
GACCTTGTTTTGGCGGAAGCTCAAGTATGCAACACGGATGGCGATCCCAC
GTTTCCTTTTACCACGGTGACATCGATGGCGTACCTTCCTTACTTCCTTC
ACTCTGAGTTCTCCCGCCACCATATTAATACAGCACGAGTTACACACGTA
AAGCTTGGGCTGCTTTCTCCTGTTCCACCTCTTTTGATGCTACTGCGGCA
ACGCACTGACGCAAACACTTGCCCTTCCGCCTGGAAGATACTCCACTGTG
ATACTATTGCATCACAGCTGTGCCGCCTTTGTTTGTTCCTACCACAATAC
GTGAGGTTGTCTCGCTACCCTTACCCCCCCTTGTTTTCCCCAGGACCGCA
GCAAGACTGCGTCGAGACGCTGAACAACACGCTCGTAGCATCGAGGAATC
CCTAGAAGCGGAGTACTTCGACCGACATTCGGCAACGATCGCCGAGAGAG
ATAAACACGCAGCCGAGGCAGCAGCTTCTCAAAATAAATCTTCTCGGCTG
GGTAAGCGTCTACGCACAGCGAAGGTTCATGATAGTCACATTCATGATAG
TCCGCCGAATTCGGGCCACGACTTTGGACCATGCGGTGGTGACTAGAACA
TTTATGGCAGGAAAACAGCCACCACCGAAAATACCCTCCTTTTCCTAGAT
CTCTTCAGGTTGTTGAAGCATACAGTCTAGCCGGATGGCGTGCTTGGCCC
TGGAGCAGTCTGCAGGGACTCTGGGGGCAAAAACATTCTGTCGTTTCGGT
CGCATTCCGATCGCCCATCACTGTAGAATTGAGGCTTTTCTACTTATCGT
GCGCTGGTTCCTATTTTGAACAGAAGCAGACGTGCGTCGCCTGGAAGCTC
AAGTAGCTGAAGCTGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3522:4403..6269-

>mRNA_H-paniculata_contig3522.9379.1 ID=mRNA_H-paniculata_contig3522.9379.1|Name=mRNA_H-paniculata_contig3522.9379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig3522:4403..6269- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCATACCCGTAGACAAAGGGACAAAGAGCACGCGGCGCGCCTAGC
GCTGCTCACGAAGCAGTTGGAAGAAGAGCGGGAGCGCAATTCTACGGTCG
TGGCGCAGGAGAGAGAAGACGGGGAGGCTCGCGTGAGAGCGGCGCAAGAG
ATGGGGCATACCCGTAGACAAAGGGACAAAGAGCACGCGGCGCGCCTAGC
GCTGCTCACGAAGCAGTTGGAAGAAGAGCGGGAGCGCAATTCTACGGTCG
TGGCGCAGGAGAGAGAAGACGGGGAGGCTCGCGTGAGAGCGGCGCAAGAG
GGACATGAATTGTGGAAGAAAGCGCACCAAGACGAGATCGCGGCCACCGG
CGAACGCGAGATCGCCAGGGACATGAATTGTGGAAGAAAGCGCACCAAGA
CGAGATCGCGGCCACCGGCGAACGCGAGATCGCCAGGACCGCAGCAAGAC
TGCGTCGAGACGCTGAACAACACGCTCGTAGCATCGAGGAATCCCTAGAA
GCGGAGTACTTCGACCGACATTCGGCAACGATCGCCGAGAGAGATAAACA
CGCAGCCGAGGCAGCAGCTTCTCAAAATAAATCTTCTCGGCTGGGACCGC
AGCAAGACTGCGTCGAGACGCTGAACAACACGCTCGTAGCATCGAGGAAT
CCCTAGAAGCGGAGTACTTCGACCGACATTCGGCAACGATCGCCGAGAGA
GATAAACACGCAGCCGAGGCAGCAGCTTCTCAAAATAAATCTTCTCGGCT
GGAAGCAGACGTGCGTCGCCTGGAAGCTCAAGTAGCTGAAGCTGCGAAGC
AGACGTGCGTCGCCTGGAAGCTCAAGTAGCTGAAGCTGCG
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