mRNA_H-paniculata_contig3522.9377.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3522.9377.1
Unique NamemRNA_H-paniculata_contig3522.9377.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE)

HSP 1 Score: 80.1 bits (196), Expect = 1.320e-15
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
            IR ++A AA  D ++  ++   AFL  D  EEIY+  P  YQE SG V RL KS+ GL QA R WN+K+   LKT+GL QS  DPC++
Sbjct:  933 IRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQE-SGKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIY 1019          
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A355BBC5_FLASP (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A355BBC5_FLASP)

HSP 1 Score: 77.8 bits (190), Expect = 8.410e-15
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
            IR ++A A  + + +  ++V  AFL  D  EEI++  P  Y + S  V RLN+SI GL QAGR WNLK+ + LKT GL +S  DPC++
Sbjct:  377 IRYLIALAVQKGYNIHQMDVTTAFLQGDIEEEIFMEQPEGYHDGSNKVCRLNRSIYGLKQAGRQWNLKLDSRLKTYGLNKSKCDPCIY 464          
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 74.7 bits (182), Expect = 2.090e-14
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
            IR ++A A V +WE+  ++V+ A+L  D  EEIY+  P  + + SG V RL+K++ GL Q+G  WN K+   L  LG +Q  ADPCV+
Sbjct:   65 IRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVY 152          
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 75.5 bits (184), Expect = 5.580e-14
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
            IR ++A A V +WE+  ++V+ A+L  D  EEIY+  P  + + SG + RL K++ GL Q+GR WN K+  +L  LG ++  ADPCV+
Sbjct: 1000 IRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVY 1087          
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A443QDV8_9ACAR (Retrovirus-related pol polyprotein from transposon tnt 1-94-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443QDV8_9ACAR)

HSP 1 Score: 70.9 bits (172), Expect = 1.790e-13
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPC 258
            IR+++A AA +D E+T+ +V+ AFL  +  EE+Y+  P  + + SG V +L KS+ GL QA R WN K T+ L   GL +S AD C
Sbjct:   75 IRVILALAASKDMEITHFDVKTAFLHGELKEELYMKQPEGFDDQSGRVCKLLKSVYGLKQAPRQWNKKFTSFLLKFGLRKSEADSC 160          
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: X1X4R9_ACYPI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X4R9_ACYPI)

HSP 1 Score: 69.7 bits (169), Expect = 3.570e-13
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
            IR + A AAVE   L   +++ AFL  +  EEIY+  P  Y++ S  V +L +S+ GL Q  RCWN++  N L   GL+ + AD CVF
Sbjct:   27 IRAIFAVAAVEKLILRQFDIKTAFLYGELQEEIYMVQPPGYEDGSNKVCKLQRSLYGLKQIPRCWNIRFRNFLNAFGLQCTEADACVF 114          
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY)

HSP 1 Score: 72.8 bits (177), Expect = 4.890e-13
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
            IR ++A A V +WE+  ++V+ A+L  D  EEIY+  P  + + SG + RL K++ GL Q+G  WN K+  +L  LG ++  ADPCV+
Sbjct:  805 IRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVY 892          
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: X1XJA8_ACYPI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XJA8_ACYPI)

HSP 1 Score: 70.5 bits (171), Expect = 9.110e-13
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
            IR + A AAVE   L   +++ AFL  +  EEIY+  P  Y++ S  V +L +S+ GL Q+ RCWN++  N L   GL+ + AD CVF
Sbjct:  120 IRAIFAVAAVEKLILRQFDIKTAFLYGELQEEIYMVQPPGYEDGSNKVCKLQRSLYGLKQSPRCWNIRFKNFLNAFGLQCTEADACVF 207          
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI)

HSP 1 Score: 71.6 bits (174), Expect = 1.250e-12
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
            IR + A AA  D ++  ++   AFL  D  EEIY+  P+ Y++ +  V RL KSI GL QA R WNLK+   LK +GL QS  D CV+
Sbjct:  483 IRFIFALAAQLDLDIDQMDAVSAFLQGDLTEEIYMTQPIGYRDNTNRVCRLKKSIYGLKQASRAWNLKLDACLKEIGLLQSKFDTCVY 570          
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: X1WMG5_ACYPI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WMG5_ACYPI)

HSP 1 Score: 70.5 bits (171), Expect = 1.470e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
            IR + A AAVE   L   +++ AFL  +  EEIY+  P  Y++ S  V +L +S+ GL Q+ RCWN++  N L   GL+ + AD CVF
Sbjct:  102 IRAIFAVAAVEKLILRQFDIKTAFLYGELQEEIYMVQPPGYEDGSNKVCKLQRSLYGLKQSPRCWNIRFRNFLNAFGLQCTEADACVF 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9Z683_LYGHE1.320e-1548.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A355BBC5_FLASP8.410e-1545.45Integrase catalytic domain-containing protein (Fra... [more]
A0A401GXA0_9APHY2.090e-1443.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY5.580e-1442.05Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A443QDV8_9ACAR1.790e-1344.19Retrovirus-related pol polyprotein from transposon... [more]
X1X4R9_ACYPI3.570e-1342.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H727_9APHY4.890e-1340.91Integrase catalytic domain-containing protein n=1 ... [more]
X1XJA8_ACYPI9.110e-1342.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5FV69_9HEMI1.250e-1245.45Uncharacterized protein n=2 Tax=Nesidiocoris tenui... [more]
X1WMG5_ACYPI1.470e-1242.05Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3522contigH-paniculata_contig3522:1960..2223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size264
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.7351391-UTR-H-paniculata_contig3522:1959..20731622930088.7351391-UTR-H-paniculata_contig3522:1959..2073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3522 1960..2073 +
1691481141.2860527-UTR-H-paniculata_contig3522:1959..20731691481141.2860527-UTR-H-paniculata_contig3522:1959..2073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3522 1960..2073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930088.7521386-CDS-H-paniculata_contig3522:2073..22231622930088.7521386-CDS-H-paniculata_contig3522:2073..2223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 2074..2223 +
1691481141.2995048-CDS-H-paniculata_contig3522:2073..22231691481141.2995048-CDS-H-paniculata_contig3522:2073..2223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3522 2074..2223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3522.9377.1prot_H-paniculata_contig3522.9377.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3522 2074..2223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3522.9377.1

>prot_H-paniculata_contig3522.9377.1 ID=prot_H-paniculata_contig3522.9377.1|Name=mRNA_H-paniculata_contig3522.9377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF
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mRNA from alignment at H-paniculata_contig3522:1960..2223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3522.9377.1 ID=mRNA_H-paniculata_contig3522.9377.1|Name=mRNA_H-paniculata_contig3522.9377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig3522:1960..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAGGATTGTGGTTGCGACTGCTGCAGTGGAAGACTGGGAGCTTACGTA CATTGAGGTCGAGCAAGCGTTTTTACCAGCGGACGACAACGAGGAAATCT ACGTCTAACTACCCATGGACTATCAGGAGTTCTCGGGAGCAGTCGGGAGG CTGAATAAATCGATTTGCGGCCTTTTTCAAGCAGGGAGGTGCTGGAATTT GAAGATCACCAACGACCTGAAGACGCTCGGTTTGGAGCAATCACCCGCGG ACCCTTGCGTGTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig3522:1960..2223+

>mRNA_H-paniculata_contig3522.9377.1 ID=mRNA_H-paniculata_contig3522.9377.1|Name=mRNA_H-paniculata_contig3522.9377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig3522:1960..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTATCAGGAGTTCTCGGGAGCAGTCGGGAGGCTGAATAAATCGAT
TTGCGGCCTTTTTCAAGCAGGGAGGTGCTGGAATTTGAAGATCACCAACG
ACCTGAAGACGCTCGGTTTGGAGCAATCACCCGCGGACCCTTGCGTGTTC
ATGGACTATCAGGAGTTCTCGGGAGCAGTCGGGAGGCTGAATAAATCGAT
TTGCGGCCTTTTTCAAGCAGGGAGGTGCTGGAATTTGAAGATCACCAACG
ACCTGAAGACGCTCGGTTTGGAGCAATCACCCGCGGACCCTTGCGTGTTC
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