mRNA_H-paniculata_contig3522.9377.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE) HSP 1 Score: 80.1 bits (196), Expect = 1.320e-15 Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
IR ++A AA D ++ ++ AFL D EEIY+ P YQE SG V RL KS+ GL QA R WN+K+ LKT+GL QS DPC++
Sbjct: 933 IRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQE-SGKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIY 1019
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A355BBC5_FLASP (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A355BBC5_FLASP) HSP 1 Score: 77.8 bits (190), Expect = 8.410e-15 Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
IR ++A A + + + ++V AFL D EEI++ P Y + S V RLN+SI GL QAGR WNLK+ + LKT GL +S DPC++
Sbjct: 377 IRYLIALAVQKGYNIHQMDVTTAFLQGDIEEEIFMEQPEGYHDGSNKVCRLNRSIYGLKQAGRQWNLKLDSRLKTYGLNKSKCDPCIY 464
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 74.7 bits (182), Expect = 2.090e-14 Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
IR ++A A V +WE+ ++V+ A+L D EEIY+ P + + SG V RL+K++ GL Q+G WN K+ L LG +Q ADPCV+
Sbjct: 65 IRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVY 152
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 75.5 bits (184), Expect = 5.580e-14 Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
IR ++A A V +WE+ ++V+ A+L D EEIY+ P + + SG + RL K++ GL Q+GR WN K+ +L LG ++ ADPCV+
Sbjct: 1000 IRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVY 1087
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A443QDV8_9ACAR (Retrovirus-related pol polyprotein from transposon tnt 1-94-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443QDV8_9ACAR) HSP 1 Score: 70.9 bits (172), Expect = 1.790e-13 Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPC 258
IR+++A AA +D E+T+ +V+ AFL + EE+Y+ P + + SG V +L KS+ GL QA R WN K T+ L GL +S AD C
Sbjct: 75 IRVILALAASKDMEITHFDVKTAFLHGELKEELYMKQPEGFDDQSGRVCKLLKSVYGLKQAPRQWNKKFTSFLLKFGLRKSEADSC 160
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: X1X4R9_ACYPI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X4R9_ACYPI) HSP 1 Score: 69.7 bits (169), Expect = 3.570e-13 Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
IR + A AAVE L +++ AFL + EEIY+ P Y++ S V +L +S+ GL Q RCWN++ N L GL+ + AD CVF
Sbjct: 27 IRAIFAVAAVEKLILRQFDIKTAFLYGELQEEIYMVQPPGYEDGSNKVCKLQRSLYGLKQIPRCWNIRFRNFLNAFGLQCTEADACVF 114
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY) HSP 1 Score: 72.8 bits (177), Expect = 4.890e-13 Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
IR ++A A V +WE+ ++V+ A+L D EEIY+ P + + SG + RL K++ GL Q+G WN K+ +L LG ++ ADPCV+
Sbjct: 805 IRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVY 892
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: X1XJA8_ACYPI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XJA8_ACYPI) HSP 1 Score: 70.5 bits (171), Expect = 9.110e-13 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
IR + A AAVE L +++ AFL + EEIY+ P Y++ S V +L +S+ GL Q+ RCWN++ N L GL+ + AD CVF
Sbjct: 120 IRAIFAVAAVEKLILRQFDIKTAFLYGELQEEIYMVQPPGYEDGSNKVCKLQRSLYGLKQSPRCWNIRFKNFLNAFGLQCTEADACVF 207
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI) HSP 1 Score: 71.6 bits (174), Expect = 1.250e-12 Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
IR + A AA D ++ ++ AFL D EEIY+ P+ Y++ + V RL KSI GL QA R WNLK+ LK +GL QS D CV+
Sbjct: 483 IRFIFALAAQLDLDIDQMDAVSAFLQGDLTEEIYMTQPIGYRDNTNRVCRLKKSIYGLKQASRAWNLKLDACLKEIGLLQSKFDTCVY 570
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Match: X1WMG5_ACYPI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WMG5_ACYPI) HSP 1 Score: 70.5 bits (171), Expect = 1.470e-12 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 1 IRIVVATAAVEDWELTYIEVEQAFLPADDNEEIYV*LPMDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVF 264
IR + A AAVE L +++ AFL + EEIY+ P Y++ S V +L +S+ GL Q+ RCWN++ N L GL+ + AD CVF
Sbjct: 102 IRAIFAVAAVEKLILRQFDIKTAFLYGELQEEIYMVQPPGYEDGSNKVCKLQRSLYGLKQSPRCWNIRFRNFLNAFGLQCTEADACVF 189 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3522.9377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3522.9377.1 >prot_H-paniculata_contig3522.9377.1 ID=prot_H-paniculata_contig3522.9377.1|Name=mRNA_H-paniculata_contig3522.9377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp MDYQEFSGAVGRLNKSICGLFQAGRCWNLKITNDLKTLGLEQSPADPCVFback to top mRNA from alignment at H-paniculata_contig3522:1960..2223+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3522.9377.1 ID=mRNA_H-paniculata_contig3522.9377.1|Name=mRNA_H-paniculata_contig3522.9377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig3522:1960..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3522:1960..2223+ >mRNA_H-paniculata_contig3522.9377.1 ID=mRNA_H-paniculata_contig3522.9377.1|Name=mRNA_H-paniculata_contig3522.9377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig3522:1960..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |