mRNA_H-paniculata_contig35210.9376.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: A0A438JVK6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JVK6_VITVI) HSP 1 Score: 158 bits (400), Expect = 1.010e-43 Identity = 85/221 (38.46%), Postives = 133/221 (60.18%), Query Frame = 1
Query: 1 LLVVVYVDDLVIAGRR-EKVDEFKHNRSQRYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
+++++YVDD++IAG EK++ K S+++ M+DL + ++LG+ + D+ NGT+ +SQS Y+++VL R+ + E + V TP+ K+ +S E + Y +GSLM + TRPDIA+ V +R M P ++ + T K I YL D + F G S L+G+VD D+A D++ RKS TG+VF L G AISW S Q++VT S+TE
Sbjct: 102 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKTNGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPRKQHWETIKWILRYLKGSLDTCLCFTGAS--LKLQGYVDVDFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTE 320
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: A0A438EU98_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EU98_VITVI) HSP 1 Score: 158 bits (399), Expect = 2.030e-43 Identity = 85/221 (38.46%), Postives = 133/221 (60.18%), Query Frame = 1
Query: 1 LLVVVYVDDLVIAGRR-EKVDEFKHNRSQRYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
+++++YVDD++IAG EK++ K S+++ M+DL + ++LG+ + D+ NGT+ +SQS Y+++VL R+ + E + V TP+ K+ +S E + Y +GSLM + TRPDIA+ V +R M P ++ + K I YL D + F G S L+G+VDAD+A D++ RKS TG+VF L G AISW S Q++VT S+TE
Sbjct: 25 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGAS--LKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTE 243
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: A0A438HHN1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HHN1_VITVI) HSP 1 Score: 156 bits (395), Expect = 4.860e-43 Identity = 84/221 (38.01%), Postives = 132/221 (59.73%), Query Frame = 1
Query: 1 LLVVVYVDDLVIAGRR-EKVDEFKHNRSQRYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
+++++YVDD++I G EK++ K S+++ M+DL + ++LG+ + D+ NGT+ +SQS Y+++VL R+ + E + V TP+ K+ +S E + Y +GSLM + TRPDIA+ V +R M P ++ + K I YL D + F G S L+G+VDAD+A D++ RKS TG+VF L G AISW S Q++VT S+TE
Sbjct: 41 IILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGAS--LKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTE 259
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: A0A438GMR2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMR2_VITVI) HSP 1 Score: 156 bits (395), Expect = 1.620e-42 Identity = 84/221 (38.01%), Postives = 132/221 (59.73%), Query Frame = 1
Query: 1 LLVVVYVDDLVIAGRR-EKVDEFKHNRSQRYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
+++++YVDD++I G EK++ K S+++ M+DL + ++LG+ + D+ NGT+ +SQS Y+++VL R+ + E + V TP+ K+ +S E + Y +GSLM + TRPDIA+ V +R M P ++ + K I YL D + F G S L+G+VDAD+A D++ RKS TG+VF L G AISW S Q++VT S+TE
Sbjct: 25 IILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGAS--LKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTE 243
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: UPI0018A7F043 (secreted RxLR effector protein 161-like n=1 Tax=Lucilia sericata TaxID=13632 RepID=UPI0018A7F043) HSP 1 Score: 151 bits (381), Expect = 4.510e-42 Identity = 82/220 (37.27%), Postives = 127/220 (57.73%), Query Frame = 1
Query: 4 LVVVYVDDLVIA-GRREKVDEFKHNRSQRYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
L+ +YVDDL++A ++K +E K S+ + M+DL L+ LGI + D IT+SQ YI+ +LK++ + +C+ TP +K L+ E E Y+ +VGSLM + TRPDIA+ V ++ + +E + KR+ YL P++G+ + + L G+ DADW +++DR+S TGY+FKL AAISW SRKQ+ V S+TE
Sbjct: 10 LLAIYVDDLIVATNNKQKWEELKLELSKSFEMKDLGQLNFCLGIEFKQDEKTKEITMSQRKYIQNILKKFNMEDCKPARTPFNTGIK-LSKEMCATEEEKSEVEKIPYQNLVGSLMYLAVSTRPDIAHIVSVLSQYNTNYGKEHWIAAKRVLRYLKGTPNIGLHY--RRTNEQLTGYADADWGANIDDRRSYTGYIFKLANAAISWESRKQRTVAMSTTE 226
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY) HSP 1 Score: 161 bits (407), Expect = 6.840e-42 Identity = 89/220 (40.45%), Postives = 122/220 (55.45%), Query Frame = 1
Query: 1 LLVVVYVDDLVIAGRREKVDEFKHNRSQRYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
++V VDDL I G + VD F + QR+ M DL L +LGI VR DR TI ISQ SYI ++ R+ L E + P++ + +S P + + YR VGSLM ++ GTRPDI + V ++ M++P R + KR+ YL +L + + +N GL G+ DADW E R S +GYVF LDG AISW S+KQ +V SSTE
Sbjct: 1221 IIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQSPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAVTALSQFMQNPGRAHWDALKRVLRYLKGSRELWLVYG--TNNEGLRGYSDADWGSSTEHRHSISGYVFTLDGGAISWSSKKQNVVALSSTE 1438
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 152 bits (385), Expect = 9.200e-42 Identity = 72/192 (37.50%), Postives = 119/192 (61.98%), Query Frame = 1
Query: 85 RYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
+++++D+ + VLG+ +R DR G +TISQS+Y++ +LKR+G+ +C+ V TP+E P + N+ EY+ ++G L +T TRPD+A V ++ M P +E + KR+ Y+ + G+ F GKS L G+ DADWA D++ R+S +GYVF+++G+ +SWCS++Q VT S+TE
Sbjct: 12 KFKVDDMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQE-----LPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTE 198
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: A0A7N2KSK9_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2KSK9_QUELO) HSP 1 Score: 160 bits (404), Expect = 1.690e-41 Identity = 85/221 (38.46%), Postives = 134/221 (60.63%), Query Frame = 1
Query: 1 LLVVVYVDDLVIAGRR-EKVDEFKHNRSQRYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
+++++YVDD++IAG E+++ K S+++ M+DL + ++LG+ + D+ NGT+ +SQS Y+++VL R+ + E + V TP+ K+ +S E+ + Y +GSLM + TRPDIA+ V +R M P ++ + K I YL D + F G S L+G+VDAD+A D++ RKS TG+VF L G AISW S Q++VT SSTE
Sbjct: 974 IILLLYVDDMLIAGSSIEEINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEVEMDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSSDTCLCFTGAS--LKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIVTLSSTE 1192
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY) HSP 1 Score: 160 bits (404), Expect = 1.710e-41 Identity = 87/220 (39.55%), Postives = 129/220 (58.64%), Query Frame = 1
Query: 1 LLVVVYVDDLVIAGRREKVDEFKHNRSQRYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
LL+ + VDD IAG + V FK S R+ M DL + +LGI VR DR T+++SQ +YI +L R+ L + + + TP++ + + P + + + YR +GSLM ++ GTRPDIAY V ++ M++P R + KR+F YL+ + +TF ++G +EGF DADW E R S +GYVF LDG A+SW ++KQ +V SSTE
Sbjct: 1115 LLIALSVDDSTIAGTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFGETTDG--VEGFSDADWGS-AEHRHSISGYVFLLDGGAVSWSAKKQNVVALSSTE 1331
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Match: A5BYJ3_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BYJ3_VITVI) HSP 1 Score: 154 bits (389), Expect = 2.210e-41 Identity = 84/221 (38.01%), Postives = 131/221 (59.28%), Query Frame = 1
Query: 1 LLVVVYVDDLVIAGRR-EKVDEFKHNRSQRYRMEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPVEGKVKILAPESAGKPSELKSGNSTEYRGMVGSLM*SSTGTRPDIAYPVHQATRRMEDPCREDFSTCKRIFLYLSTVPDLGITFAGKSNGRGLEGFVDADWAEDVEDRKSATGYVFKLDGAAISWCSRKQQLVTWSSTE 660
+++++YVDD++IAG EK++ K S+++ M+DL ++LG+ + D+ NGT+ +SQS Y+++VL R+ + E + V TP+ K+ +S E + Y +GSLM + TRPDIA+ V +R M ++ + K I YL D + F G S L+G+VDAD+A D++ RKS TG+VF L G AISW S Q++VT S+TE
Sbjct: 93 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGXAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDXMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRXGKQHWEAVKWILRYLKGSLDTCLCFTGAS--LKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWXSNLQKIVTLSTTE 311 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35210.9376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig35210.9376.1 >prot_H-paniculata_contig35210.9376.1 ID=prot_H-paniculata_contig35210.9376.1|Name=mRNA_H-paniculata_contig35210.9376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp MEDLDSLSRVLGIAVRCDRPNGTITISQSSYIREVLKRYGLGECRGVPTPback to top mRNA from alignment at H-paniculata_contig35210:621..1340+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig35210.9376.1 ID=mRNA_H-paniculata_contig35210.9376.1|Name=mRNA_H-paniculata_contig35210.9376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig35210:621..1340+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig35210:621..1340+ >mRNA_H-paniculata_contig35210.9376.1 ID=mRNA_H-paniculata_contig35210.9376.1|Name=mRNA_H-paniculata_contig35210.9376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig35210:621..1340+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |