mRNA_H-paniculata_contig35208.9374.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.050e-31 Identity = 75/200 (37.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query: 88 LVQAGRC*NTKVIDDLKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDIL--ATSKTAEAIDRFIGELGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKILQCLLQT 681
L QA R +++ +LK IGFEQS +DPCV R ++ +V ++ IHVDDIL T+ AE + + LG + K LG F++GC RDR + + Q+ Y++ + +RF V +TS IPA S ++ E+ + +R VG+LM RPD+ VR VA+ P + HWKAA KIL LL+T
Sbjct: 133 LKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSLAEVV---VAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLET 322
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5JJC4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC4_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.980e-31 Identity = 75/201 (37.31%), Postives = 109/201 (54.23%), Query Frame = 1
Query: 88 LVQAGRC*NTKVIDDLKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDIL--ATSKTAEAIDRFIGELGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKILQCLLQTM 684
L QA R + + + DLK IGFEQ DPCV R I+ +V ++ IH DDIL T + A+ + + LG + K+LG F++GC SRDR + + Q+ YV+ + +RF + +TS I A S ++ E+ + + +R VG+LM RPD+ VR VA+ P HWKAA KIL CLL+T+
Sbjct: 166 LRQASRTFHRRQVWDLKAIGFEQPLFDPCVLRFIMGDEVMGMVAIHADDILHAGTERLAKMV---VEALGDSLSTKNLGEVKFFLGCAFSRDREAGTIEISQESYVRSVLERFNIYRTSSISA-------SPAKAYRSVMEDEEAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKTSHWKAAQKILDCLLETV 356
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 130 bits (326), Expect = 6.000e-31 Identity = 75/200 (37.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query: 88 LVQAGRC*NTKVIDDLKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDIL--ATSKTAEAIDRFIGELGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKILQCLLQT 681
L QA R +++ +LK IGFEQS +DPCV R ++ +V ++ IHVDDIL T AE + + LG + K+LG F++GC RDR + + Q+ Y++ + +RF V +TS IPA S ++ E+ + +R VG+LM RPD+ VR VA+ P + HWKAA KIL LL+T
Sbjct: 599 LKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVV---VAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLET 788
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 130 bits (326), Expect = 6.290e-31 Identity = 75/200 (37.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query: 88 LVQAGRC*NTKVIDDLKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDIL--ATSKTAEAIDRFIGELGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKILQCLLQT 681
L QA R +++ +LK IGFEQS +DPCV R ++ +V ++ IHVDDIL T AE + + LG + K+LG F++GC RDR + + Q+ Y++ + +RF V +TS IPA S ++ E+ + +R VG+LM RPD+ VR VA+ P + HWKAA KIL LL+T
Sbjct: 866 LKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVV---VAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLET 1055
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.190e-30 Identity = 74/198 (37.37%), Postives = 108/198 (54.55%), Query Frame = 1
Query: 88 LVQAGRC*NTKVIDDLKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDILATSKTAEAIDRFIGELGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKILQCLLQT 681
L QA R +++ DLK IGFEQS +DPCV R ++ +V ++ IHVDDIL + A + + LG + K+LG F++GC RDR + + Q+ Y++ + +RF V +TS IPA+ V+ ++ E + + +R VG M + RPD+ VVR VA+ P HWKAA KIL LL T
Sbjct: 318 LKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLA-ETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVN-------RSVMENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGT 507
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.490e-30 Identity = 77/201 (38.31%), Postives = 109/201 (54.23%), Query Frame = 1
Query: 88 LVQAGRC*NTKVIDDLKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDILATSKTAEAIDRF----IGELGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKILQCLLQ 678
L QA R + +++ DLK IGFEQS +DPCV R ++ +V +I IHVDDIL E I+R + LG + K+LG F++GC RDR + + Q+ Y++ + +RF V +TS IPA S K+ E+ R + +R VG+LM RPD+ VR VA+ P + H KAA KIL LL+
Sbjct: 15 LRQASRIFHKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMIAIHVDDILY-----EGIERLAKMVVEALGDSLPTKNLGEIRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SLTNDYKSVMEDEGARDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHGKAAQKILNYLLE 203
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.540e-30 Identity = 75/200 (37.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query: 88 LVQAGRC*NTKVIDDLKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDIL--ATSKTAEAIDRFIGELGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKILQCLLQT 681
L QA R + +++ DLK IGFEQS +DPCV ++ +V +I IHVDDIL + AE + + LG + K+LG F++GC +RDR + + Q+ Y++ + +RF V +TS IPA S ++ E+ + +R VG+LM RPD+ VR VA+ P + HWKAA KIL LL+T
Sbjct: 300 LRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLAEMV---VEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLET 489
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5JNA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA7_9PHAE) HSP 1 Score: 125 bits (314), Expect = 6.700e-30 Identity = 75/200 (37.50%), Postives = 107/200 (53.50%), Query Frame = 1
Query: 88 LVQAGRC*NTKVIDDLKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDILATSKTAEAIDRFIGELGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKILQCLLQTML 687
L QA R + +++ DLK IGFEQS +DPCV R I+ ++ +I IHVDDIL + A + LG K+LG F++GC +RDR R + + Q V+ + +RF + +TS IPA S ++ EE K + +R G+LM RPD+ VR VA+ P + HWKA KIL L++T L
Sbjct: 212 LRQASRTFHKRLVSDLKTIGFEQSLSDPCVLRFIMGDEMMDMIAIHVDDILYGGIESLATT-VVQALGDSFRTKNLGEVKFFLGCAFNRDREARTIEMSQVSCVRRVLERFNICRTSPIPA-------SPASDYRSVTEEEKAGDLPFREVAGSLMWIANQTRPDISNAVRVVARHSRKPKKSHWKADQKILNYLMETTL 403
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5J7G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7G8_9PHAE) HSP 1 Score: 122 bits (306), Expect = 2.180e-28 Identity = 74/199 (37.19%), Postives = 107/199 (53.77%), Query Frame = 1
Query: 88 LVQAGRC*NTKVIDDLKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDILATSKTAEAIDRFIGE-LGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKILQCLLQT 681
L QA R + ++ DLK IGFEQS +D CV R ++ +V +I IHVDDIL E + + + E LG + K+LG +++GC RDR + + Q+ Y++ + +RF V +TS IPA S ++ E+ + +R VG+LM RPD+ VR VA+ P HWKAA KIL LL+T
Sbjct: 283 LRQASRTIHKGLVSDLKRIGFEQSLSDLCVLRFMMGDEVLGMIAIHVDDILHAG--IERLAKMVVEALGDSLPTKNLGEVRYFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPANDYRSVMEDEGAGDVPFREVVGSLMWIANQKRPDISKAVRAVARHSHEPKRSHWKAAQKILNYLLET 472
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Match: A0A6H5KK77_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK77_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.420e-25 Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 1
Query: 133 LKGIGFEQSHADPCVFRSIVDGKVEVVIVIHVDDILATSKTAEAIDRFIGELGQKIFIKDLGTANFYMGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGGLKTPEEEVKMRGILYRVAVGALM*APTIMRPDVPAVVRTVAKFCINPGEVHWKAAMKIL 663
L +GFEQ AD CVFR I G V +++V+HVDDI+A + E D+F +L + + +K+LG +Y GC R + +L + Q + +A + VT +P ++GV L + + + +R VG+LM T RPD+ VR VA++C +P VHW AAM +L
Sbjct: 851 LVALGFEQCMADACVFRLIEGGGVVLILVVHVDDIVAVGER-ERCDKFGADLNKSVPVKNLGELRWYSGCFYERSKETGRLTISQQTFTDELAAEYGVTGGKSVPMSSGVK-------LSDFDADEEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGML 1019 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35208.9374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig35208.9374.1 >prot_H-paniculata_contig35208.9374.1 ID=prot_H-paniculata_contig35208.9374.1|Name=mRNA_H-paniculata_contig35208.9374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp MGCHISRDRSGRKLRLGQDLYVQLIADRFEVTKTSMIPAAAGVMPLSRKGback to top mRNA from alignment at H-paniculata_contig35208:1537..2223+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig35208.9374.1 ID=mRNA_H-paniculata_contig35208.9374.1|Name=mRNA_H-paniculata_contig35208.9374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=687bp|location=Sequence derived from alignment at H-paniculata_contig35208:1537..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig35208:1537..2223+ >mRNA_H-paniculata_contig35208.9374.1 ID=mRNA_H-paniculata_contig35208.9374.1|Name=mRNA_H-paniculata_contig35208.9374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig35208:1537..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |