mRNA_H-paniculata_contig35189.9363.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35189.9363.1
Unique NamemRNA_H-paniculata_contig35189.9363.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: A0A6H5KWG5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWG5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 6.050e-26
Identity = 58/80 (72.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   25 FLGALRTTG----CPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQADAGQSRLSVWCSPMKRAVQTARA 252
            F GALR       CPV+LTRHGE++ NQ  SMGGD NLSE G+RYA VLADFVAAQ  AGQSRL VWCSPMKRA QTARA
Sbjct:  453 FAGALRMKKSWHECPVYLTRHGESLGNQTKSMGGDGNLSETGDRYAGVLADFVAAQLGAGQSRLLVWCSPMKRAAQTARA 532          
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: A0A0P4WEP2_SCYOL (6PF2K domain-containing protein n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WEP2_SCYOL)

HSP 1 Score: 68.6 bits (166), Expect = 1.280e-11
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   25 FLGALRTTGCPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQADAGQSRLSVWCSPMKRAVQTARAV 255
            +L  +  T   ++LTRHGE++ NQ+G +GGD++LS  G +YA+ LA F+A Q     + L VW S MKR +QTA  +
Sbjct:  245 YLMNIHITPRSIYLTRHGESVFNQLGRIGGDSDLSYRGRQYANALAKFIAEQ---NITNLRVWTSCMKRTIQTASGI 318          
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: A0A0P4W781_SCYOL (6PF2K domain-containing protein n=5 Tax=Portunidae TaxID=6757 RepID=A0A0P4W781_SCYOL)

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-11
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   25 FLGALRTTGCPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQADAGQSRLSVWCSPMKRAVQTARAV 255
            +L  +  T   ++LTRHGE++ NQ+G +GGD++LS  G +YA+ LA F+A Q     + L VW S MKR +QTA  +
Sbjct:  245 YLMNIHITPRSIYLTRHGESVFNQLGRIGGDSDLSYRGRQYANALAKFIAEQ---NITNLRVWTSCMKRTIQTASGI 318          
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: A0A3R7MSA5_PENVA (6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase n=7 Tax=Penaeus TaxID=133894 RepID=A0A3R7MSA5_PENVA)

HSP 1 Score: 68.2 bits (165), Expect = 1.760e-11
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   25 FLGALRTTGCPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQADAGQSRLSVWCSPMKRAVQTARAV 255
            +L  +  T   ++LTRHGE++ NQ+G +GGDT+LS  G +YA+ +A F++ Q       L VW S MKR +QTA  +
Sbjct:  209 YLMNIHITPRSIYLTRHGESLFNQLGRIGGDTDLSHRGRQYANAMAKFISGQ---NIPNLRVWTSCMKRTIQTAAGI 282          
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: UPI001E673F1E (6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 1-like isoform X1 n=4 Tax=Astacidea TaxID=6712 RepID=UPI001E673F1E)

HSP 1 Score: 67.8 bits (164), Expect = 2.430e-11
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   25 FLGALRTTGCPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQADAGQSRLSVWCSPMKRAVQTARAV 255
            +L  +  T   ++LTRHGE++ NQ+G +GGDT+LS  G +YA+ LA F++ Q       L VW S MKR +QTA  +
Sbjct:  245 YLMNIHITPRSIYLTRHGESVYNQLGRIGGDTDLSHRGRQYANALAKFISNQ---NIPSLRVWTSCMKRTIQTASGI 318          
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: A0A8J5JLN7_HOMAM (6-phosphofructo-2-kinase/fructose-2-6-bisphosphatase 1-like n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5JLN7_HOMAM)

HSP 1 Score: 67.4 bits (163), Expect = 3.240e-11
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   25 FLGALRTTGCPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQADAGQSRLSVWCSPMKRAVQTARAV 255
            +L  +  T   ++LTRHGE++ NQ+G +GGDT+LS  G +Y++ LA F++   D     L VW S MKR +QTA  +
Sbjct:  225 YLMNIHITPRSIYLTRHGESVYNQLGRIGGDTDLSHRGRQYSNALAKFIS---DQSIPNLRVWTSCMKRTIQTASGI 298          
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: A0A3P3YHY7_PLABS (6PF2K domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YHY7_PLABS)

HSP 1 Score: 67.4 bits (163), Expect = 3.260e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   25 FLGALRTTGCPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQADAGQSR-LSVWCSPMKRAVQTARAV 255
            FL  +R    P+++TRHGE+  N  G +GGD+ LS  G +YA  LA+F+ A+  A  +  L+VWCS +KR ++TA  +
Sbjct:  240 FLLHVRINHAPIYITRHGESEFNIQGKIGGDSPLSANGRQYADKLAEFMKAELAASNTGPLTVWCSTLKRTIETAAPI 317          
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: A0A5A9NDD9_9TELE (6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NDD9_9TELE)

HSP 1 Score: 67.0 bits (162), Expect = 4.450e-11
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   25 FLGALRTTGCPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQADAGQSRLSVWCSPMKRAVQTARAV 255
            +L  +  T   ++L+RHGE+ +N +G +GGD++LS +G +YA+ L++F+  QA      L VW S MKR VQTA A+
Sbjct:  229 YLMNIHVTPRSIYLSRHGESELNLLGKIGGDSDLSSQGQKYATALSEFIRGQAI---KDLKVWTSHMKRTVQTAEAI 302          
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: A0A5B7EYQ6_PORTR (6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 1 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7EYQ6_PORTR)

HSP 1 Score: 66.2 bits (160), Expect = 6.510e-11
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   25 FLGALRTTGCPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQADAGQSRLSVWCSPMKRAVQTARAV 255
            +L  +  T   ++LTRHGE++ NQ+G +GGD++LS  G +YA+ LA F+  Q     + L VW S MKR +QTA  +
Sbjct:  209 YLMNIHITPRSIYLTRHGESVYNQLGRIGGDSDLSYRGRQYANALAKFITEQ---DITNLRVWTSCMKRTIQTASGI 282          
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Match: X6MU60_RETFI (6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase short form n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MU60_RETFI)

HSP 1 Score: 66.2 bits (160), Expect = 7.990e-11
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   58 VFLTRHGEAIMNQMGSMGGDTNLSEEGNRYASVLADFVAAQAD---AGQSRLSVWCSPMKRAVQTARA 252
            +FLTRHGE+  N  G +GGD  LS  G RYA  +AD++  Q +     Q  + +WCS MKR VQTA A
Sbjct:  188 IFLTRHGESEFNVSGRIGGDGALSSSGKRYAKAMADWIIMQPEFYNREQGHMHIWCSTMKRTVQTANA 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35189.9363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWG5_9PHAE6.050e-2672.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0P4WEP2_SCYOL1.280e-1144.166PF2K domain-containing protein n=1 Tax=Scylla oli... [more]
A0A0P4W781_SCYOL1.300e-1144.166PF2K domain-containing protein n=5 Tax=Portunidae... [more]
A0A3R7MSA5_PENVA1.760e-1142.866-phosphofructo-2-kinase/fructose-2, 6-bisphosphat... [more]
UPI001E673F1E2.430e-1144.166-phosphofructo-2-kinase/fructose-2, 6-bisphosphat... [more]
A0A8J5JLN7_HOMAM3.240e-1142.866-phosphofructo-2-kinase/fructose-2-6-bisphosphata... [more]
A0A3P3YHY7_PLABS3.260e-1142.316PF2K domain-containing protein n=2 Tax=Plasmodiop... [more]
A0A5A9NDD9_9TELE4.450e-1142.866-phosphofructo-2-kinase/fructose-2, 6-bisphosphat... [more]
A0A5B7EYQ6_PORTR6.510e-1142.866-phosphofructo-2-kinase/fructose-2, 6-bisphosphat... [more]
X6MU60_RETFI7.990e-1148.536-phosphofructo-2-kinase/fructose-2, 6-bisphosphat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35189contigH-paniculata_contig35189:171..425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue4.5e-23
Seed eggNOG ortholog2880.D8LFR1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.6phosphofructo2kinase
EggNOG OGsCOG0406@1,KOG0234@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.6299248-CDS-H-paniculata_contig35189:170..4251622930087.6299248-CDS-H-paniculata_contig35189:170..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35189 171..425 -
1691481140.8478308-CDS-H-paniculata_contig35189:170..4251691481140.8478308-CDS-H-paniculata_contig35189:170..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35189 171..425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35189.9363.1prot_H-paniculata_contig35189.9363.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35189 171..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35189.9363.1

>prot_H-paniculata_contig35189.9363.1 ID=prot_H-paniculata_contig35189.9363.1|Name=mRNA_H-paniculata_contig35189.9363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MSFFFFFAFLGALRTTGCPVFLTRHGEAIMNQMGSMGGDTNLSEEGNRYA
SVLADFVAAQADAGQSRLSVWCSPMKRAVQTARAV
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mRNA from alignment at H-paniculata_contig35189:171..425-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35189.9363.1 ID=mRNA_H-paniculata_contig35189.9363.1|Name=mRNA_H-paniculata_contig35189.9363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig35189:171..425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATTTTTTTTTTTTTTTGCCTTTCTTGGGGCTTTGCGAACGACAGG GTGCCCGGTGTTTCTGACACGGCATGGAGAGGCAATCATGAACCAGATGG GATCAATGGGCGGTGACACAAATCTATCGGAGGAAGGCAATCGGTACGCC TCCGTGCTGGCGGACTTTGTCGCCGCACAGGCGGACGCGGGGCAGAGCCG ACTGTCGGTGTGGTGCTCTCCGATGAAGAGGGCGGTGCAGACCGCGAGAG CGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig35189:171..425-

>mRNA_H-paniculata_contig35189.9363.1 ID=mRNA_H-paniculata_contig35189.9363.1|Name=mRNA_H-paniculata_contig35189.9363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig35189:171..425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATTTTTTTTTTTTTTTGCCTTTCTTGGGGCTTTGCGAACGACAGG
GTGCCCGGTGTTTCTGACACGGCATGGAGAGGCAATCATGAACCAGATGG
GATCAATGGGCGGTGACACAAATCTATCGGAGGAAGGCAATCGGTACGCC
TCCGTGCTGGCGGACTTTGTCGCCGCACAGGCGGACGCGGGGCAGAGCCG
ACTGTCGGTGTGGTGCTCTCCGATGAAGAGGGCGGTGCAGACCGCGAGAG
CGGTGATGTCATTTTTTTTTTTTTTTGCCTTTCTTGGGGCTTTGCGAACG
ACAGGGTGCCCGGTGTTTCTGACACGGCATGGAGAGGCAATCATGAACCA
GATGGGATCAATGGGCGGTGACACAAATCTATCGGAGGAAGGCAATCGGT
ACGCCTCCGTGCTGGCGGACTTTGTCGCCGCACAGGCGGACGCGGGGCAG
AGCCGACTGTCGGTGTGGTGCTCTCCGATGAAGAGGGCGGTGCAGACCGC
GAGAGCGGTG
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