mRNA_H-paniculata_contig35164.9360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35164.9360.1
Unique NamemRNA_H-paniculata_contig35164.9360.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35164.9360.1 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.970e-16
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 SRLYTGKEKIPTLAYEMIVDHWGRVLSVTKGYEGSQNDKAIVRLDKAISKIWKDERYVSTEFTLINADG 207
            +R YTGKE +P++AY+ IVDH GR+L+VTKG+ G+ NDK I+  D A++KI +D  Y    +TL + +G
Sbjct:   31 ARQYTGKEGLPSIAYQAIVDHTGRILAVTKGFAGAMNDKTIIWYDTAVAKIRRDPVYTEKVYTLSDKNG 99
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BLAST of mRNA_H-paniculata_contig35164.9360.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.860e-15
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 SRLYTGKEKIPTLAYEMIVDHWGRVLSVTKGYEGSQNDKAIVRLDKAISKIWKDERYVSTEFTLINADG 207
            +R YTGKE  P++AY+ IVDH GRVL+VTKG+ G+ NDK I+R D A++ I +D  Y     TL + +G
Sbjct:   26 ARQYTGKEGFPSIAYQAIVDHTGRVLAVTKGFPGAMNDKTIIRYDTAVAMIRRDPVYTEKVNTLFDENG 94
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BLAST of mRNA_H-paniculata_contig35164.9360.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 8.550e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    4 RLYTGKEKIPTLAYEMIVDHWGRVLSVTKGYEGSQNDKAIVRLDKAISKIWKDERYVSTEFTLINADGTMTTHK 225
            R YTGKE +PT+ Y++ V+H GR  +VT+G+ GS NDK IV  D A+ KI  D++Y    F + N DGT TT K
Sbjct:  218 RSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLK 291
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BLAST of mRNA_H-paniculata_contig35164.9360.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.610e-14
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 SRLYTGKEKIPTLAYEMIVDHWGRVLSVTKGYEGSQNDKAIVRLDKAISKIWKDERYVSTEFTLINADG 207
            +R+YTGKE  PT+A+++ VDH GRVL+VT+G+ G+ NDK I+R DKA+++I  D  Y   ++ L   DG
Sbjct:  173 ARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDG 241
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BLAST of mRNA_H-paniculata_contig35164.9360.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.830e-14
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 SRLYTGKEKIPTLAYEMIVDHWGRVLSVTKGYEGSQNDKAIVRLDKAISKIWKDERYVSTEFTLINADG 207
            +R+YTGKE  PT+A+++ VDH GRVL+VT+G+ G+ NDK I+R DKA+++I  D  Y   ++ L   DG
Sbjct:  264 ARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDG 332
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BLAST of mRNA_H-paniculata_contig35164.9360.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.070e-13
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 SRLYTGKEKIPTLAYEMIVDHWGRVLSVTKGYEGSQNDKAIVRLDKAISKIWKDERYVSTEFTLINADGTMTTHK 225
            +R YTGKE +PT+ Y++ V+H GR ++VT+G+  S NDK  V  D  + KI  D +Y    F + N DGT TT K
Sbjct:  190 ARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLK 264
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BLAST of mRNA_H-paniculata_contig35164.9360.1 vs. uniprot
Match: A0A6H5JTS2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.420e-12
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   10 YTGKEKIPTLAYEMIVDHWGRVLSVTKGYEGSQNDKAIVRLDKAISKIWKDERYVSTEFTLINADGTMTTHK 225
            +T +  +PT+AY++ VDH GR ++VT+G+ GS NDK I   D A+ KI  D++Y    F + N DGT TT K
Sbjct:  166 WTTQGGVPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIFCWDAAVEKIRTDKQYTDKTFDVYNEDGTTTTLK 237
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BLAST of mRNA_H-paniculata_contig35164.9360.1 vs. uniprot
Match: A0A7S3HIR9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIR9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.690e-7
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:    7 LYTGKEKIPTLAYEMIVDHWGRVLSVTKGYEGSQNDKAIVRLDKAISKIWKDERYVSTEFTLINADGTMTT 219
            L  GKEK P+L++E++VDH  R+ S T G+ G+ +D  IV  D     I     Y   EF+L N DGT TT
Sbjct:  148 LCKGKEKFPSLSFEVVVDHTRRIHSCTDGFIGTASDAVIVVNDPYCRAI-ASGLYEEVEFSLYNEDGTWTT 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35164.9360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5J792_9PHAE2.970e-1649.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ66_9PHAE6.860e-1550.72DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FPI7_ECTSI8.550e-1550.00Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5KY50_9PHAE1.610e-1449.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.830e-1449.28Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE5.070e-1345.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTS2_9PHAE3.420e-1245.83DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S3HIR9_9STRA9.690e-743.66Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35164contigH-paniculata_contig35164:1338..1568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.3590055-CDS-H-paniculata_contig35164:1337..15681622930087.3590055-CDS-H-paniculata_contig35164:1337..1568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35164 1338..1568 +
1691481140.728119-CDS-H-paniculata_contig35164:1337..15681691481140.728119-CDS-H-paniculata_contig35164:1337..1568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35164 1338..1568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35164.9360.1prot_H-paniculata_contig35164.9360.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35164 1338..1568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35164.9360.1

>prot_H-paniculata_contig35164.9360.1 ID=prot_H-paniculata_contig35164.9360.1|Name=mRNA_H-paniculata_contig35164.9360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
SRLYTGKEKIPTLAYEMIVDHWGRVLSVTKGYEGSQNDKAIVRLDKAISK
IWKDERYVSTEFTLINADGTMTTHKSV
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mRNA from alignment at H-paniculata_contig35164:1338..1568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35164.9360.1 ID=mRNA_H-paniculata_contig35164.9360.1|Name=mRNA_H-paniculata_contig35164.9360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig35164:1338..1568+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGACTGTACACCGGGAAAGAGAAGATTCCCACACTGGCGTACGAGAT
GATCGTGGACCACTGGGGTCGAGTTCTCTCCGTCACCAAAGGGTACGAGG
GCTCCCAGAACGACAAGGCCATCGTGCGACTGGACAAGGCAATATCGAAG
ATTTGGAAGGACGAACGATACGTGTCCACCGAGTTCACCCTCATCAACGC
GGACGGAACAATGACTACGCACAAAAGTGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig35164:1338..1568+

>mRNA_H-paniculata_contig35164.9360.1 ID=mRNA_H-paniculata_contig35164.9360.1|Name=mRNA_H-paniculata_contig35164.9360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig35164:1338..1568+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGACTGTACACCGGGAAAGAGAAGATTCCCACACTGGCGTACGAGAT
GATCGTGGACCACTGGGGTCGAGTTCTCTCCGTCACCAAAGGGTACGAGG
GCTCCCAGAACGACAAGGCCATCGTGCGACTGGACAAGGCAATATCGAAG
ATTTGGAAGGACGAACGATACGTGTCCACCGAGTTCACCCTCATCAACGC
GGACGGAACAATGACTACGCACAAAAGTGTTTCCAGACTGTACACCGGGA
AAGAGAAGATTCCCACACTGGCGTACGAGATGATCGTGGACCACTGGGGT
CGAGTTCTCTCCGTCACCAAAGGGTACGAGGGCTCCCAGAACGACAAGGC
CATCGTGCGACTGGACAAGGCAATATCGAAGATTTGGAAGGACGAACGAT
ACGTGTCCACCGAGTTCACCCTCATCAACGCGGACGGAACAATGACTACG
CACAAAAGTGTT
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