mRNA_H-paniculata_contig3516.9359.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3516.9359.1
Unique NamemRNA_H-paniculata_contig3516.9359.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: D8LJ13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ13_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 3.910e-46
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    1 ACLQLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRAHSDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            A  QL +DPYYRTLEGFEVLVEKEWCSFGH FGLRAHSDSPTESSPVFLQWLDAVWQ++ QYPSSFEFTGHYLERLVE +YSA FLNF
Sbjct:  714 ALAQLYMDPYYRTLEGFEVLVEKEWCSFGHMFGLRAHSDSPTESSPVFLQWLDAVWQLVRQYPSSFEFTGHYLERLVEGVYSAGFLNF 801
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: A0A6H5L4I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I2_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 5.570e-46
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    1 ACLQLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRAHSDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            A  QL +DPYYRTLEGFEVLVEKEWCSFGH FGLRAHSDSPTESSPVFLQWLDAVWQ++ QYPSSFEFTGHYLERLVE +YSA FLNF
Sbjct:  732 AFAQLCMDPYYRTLEGFEVLVEKEWCSFGHMFGLRAHSDSPTESSPVFLQWLDAVWQLVGQYPSSFEFTGHYLERLVEGVYSAGFLNF 819
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: A0A662YIJ4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIJ4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.240e-27
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    1 ACLQLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRA---HSDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            A  +L++DPYYRT+ GFEVL+EKEWCSFGH+F  R     S+  +E+SPVFLQW+D VWQVL Q+PS+FEF   YL  +++ LYS  F  F
Sbjct:  801 ALAELLIDPYYRTIHGFEVLIEKEWCSFGHKFRDRTGHGSSNGSSETSPVFLQWIDCVWQVLTQFPSAFEFNERYLMLILDHLYSCRFGTF 891
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: A0A3F2RXR7_9STRA (Phosphatidylinositol-3-phosphatase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXR7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.650e-27
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:   10 QLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRA---HSDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            +L++DPYYRT+ GFEVL+EKEWCSFGH+F  R     S+S  E+SPVFLQW+D VWQVLVQ PS+FEF   YL  +++ LYS  F  F
Sbjct:  217 ELLIDPYYRTIRGFEVLIEKEWCSFGHKFRDRTGHGSSNSSNETSPVFLQWIDCVWQVLVQSPSAFEFNERYLILILDHLYSCRFGTF 304
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: A0A662XHP7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHP7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.320e-27
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 ACLQLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRA---HSDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            A  +L++DPYYRT+ GFEVL+EKEWCSFGH+F  R      +  +E+SPVFLQW+D VWQVL Q+PS+FEF   YL  +++ LYS  F  F
Sbjct:  759 ALAELLIDPYYRTIHGFEVLIEKEWCSFGHKFRDRTGHGFGNGSSETSPVFLQWIDCVWQVLTQFPSAFEFNERYLMLILDHLYSCRFGTF 849
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: A0A3M6VJA6_9STRA (Phosphatidylinositol-3-phosphatase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJA6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.080e-26
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   10 QLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRAH---SDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            +L++DPYYRT+ GF+ L+EKEWCSFGH+F  R     S++ +ESSPVFLQW+D VWQVLVQ+PS+FEF   YL  +++ LYS  F  F
Sbjct:  524 ELLIDPYYRTVVGFQRLIEKEWCSFGHKFRDRTSHGASNNSSESSPVFLQWIDCVWQVLVQFPSAFEFNERYLMLILDHLYSCRFGTF 611
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: G4ZAG1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZAG1_PHYSP)

HSP 1 Score: 111 bits (277), Expect = 1.480e-26
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    1 ACLQLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRAH---SDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            A  +L++DPYYRT++GF+VL+EKEWCSFGH+F  R     S++  E SPVFLQW+D VWQVLVQ PS+FEF   YL  +++ LYS  F  F
Sbjct:  583 ALTELLIDPYYRTVQGFQVLIEKEWCSFGHKFRDRTGHGASNNSNEISPVFLQWIDCVWQVLVQSPSAFEFNERYLILILDHLYSCRFGTF 673
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: A0A6A3RNB6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RNB6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.490e-26
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    1 ACLQLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRAH---SDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            A  +L++DPYYRT++GF+VL+EKEWCSFGH+F  R     S++  E SPVFLQW+D VWQVLVQ PS+FEF   YL  +++ LYS  F  F
Sbjct:  737 ALTELLIDPYYRTVQGFQVLIEKEWCSFGHKFRDRTGHGASNNSNEISPVFLQWIDCVWQVLVQSPSAFEFNERYLILILDHLYSCRFGTF 827
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: A7RIH6_NEMVE (Phosphatidylinositol-3-phosphatase (Fragment) n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RIH6_NEMVE)

HSP 1 Score: 105 bits (263), Expect = 2.280e-26
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   10 QLILDPYYRTLEGFEVLVEKEWCSFGHRFGLR-AHSDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            QL+LDPYYRT  GF+VL+EKEW SFGHRF  R  H   P++ SP+FLQ+LD VWQV  Q+PS+F+FT +YL +L + + S  F NF
Sbjct:   88 QLLLDPYYRTFTGFQVLIEKEWISFGHRFRDRLGHPTCPSQRSPIFLQFLDCVWQVHKQFPSAFQFTANYLLKLADHVNSQWFGNF 173
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BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Match: H3G7G1_PHYRM (Phosphatidylinositol-3-phosphatase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7G1_PHYRM)

HSP 1 Score: 108 bits (271), Expect = 2.600e-26
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:    1 ACLQLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRAH---SDSPTESSPVFLQWLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF 264
            A  +L++DPYYRT+ GFEVL+EKEWCS+GH+F  R     S++  E+SP+FLQW+D VWQV+ Q PS+FEF   YL  +++ LYS  F  F
Sbjct:  239 ALAELLIDPYYRTITGFEVLIEKEWCSYGHKFRDRTGHGASNNANETSPIFLQWIDCVWQVMAQSPSAFEFNERYLILILDHLYSCRFGTF 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3516.9359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ13_ECTSI3.910e-4687.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I2_9PHAE5.570e-4687.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A662YIJ4_9STRA1.240e-2757.14Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3F2RXR7_9STRA1.650e-2760.23Phosphatidylinositol-3-phosphatase n=1 Tax=Phytoph... [more]
A0A662XHP7_9STRA4.320e-2756.04Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3M6VJA6_9STRA1.080e-2657.95Phosphatidylinositol-3-phosphatase n=1 Tax=Peronos... [more]
G4ZAG1_PHYSP1.480e-2657.14Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3RNB6_9STRA1.490e-2657.14Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A7RIH6_NEMVE2.280e-2658.14Phosphatidylinositol-3-phosphatase (Fragment) n=3 ... [more]
H3G7G1_PHYRM2.600e-2653.85Phosphatidylinositol-3-phosphatase n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3516contigH-paniculata_contig3516:16776..17453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue4.6e-39
Seed eggNOG ortholog2880.D8LJ13
Preferred nameMTMR6
KEGG koko:K10334,ko:K18083,ko:K18084
KEGG Pathwayko00562,ko01100,ko04070,ko04138,map00562,map01100,map04070,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000187,GO:0000278,GO:0001568,GO:0001932,GO:0001934,GO:0001944,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004438,GO:0004672,GO:0004708,GO:0004712,GO:0004721,GO:0004722,GO:0004725,GO:0005215,GO:0005216,GO:0005227,GO:0005261,GO:0005267,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0006066,GO:0006464,GO:0006468,GO:0006470,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006897,GO:0006907,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0008138,GO:0008150,GO:0008152,GO:0008324,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009791,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010506,GO:0010507,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010921,GO:0010922,GO:0012505,GO:0014065,GO:0015075,GO:0015077,GO:0015079,GO:0015267,GO:0015269,GO:0015318,GO:0015672,GO:0016020,GO:0016192,GO:0016301,GO:0016310,GO:0016311,GO:0016312,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0019216,GO:0019220,GO:0019222,GO:0019538,GO:0019637,GO:0019751,GO:0019899,GO:0019902,GO:0019903,GO:0022803,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030111,GO:0030234,GO:0030258,GO:0030334,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031399,GO:0031401,GO:0031647,GO:0031967,GO:0031975,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033674,GO:0034220,GO:0034593,GO:0035303,GO:0035306,GO:0035335,GO:0035556,GO:0036211,GO:0040012,GO:0042325,GO:0042327,GO:0042578,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043647,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045017,GO:0045177,GO:0045859,GO:0045860,GO:0045937,GO:0046164,GO:0046174,GO:0046434,GO:0046474,GO:0046486,GO:0046488,GO:0046838,GO:0046839,GO:0046855,GO:0046856,GO:0046873,GO:0048015,GO:0048017,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051270,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051716,GO:0052629,GO:0052744,GO:0052745,GO:0052866,GO:0055085,GO:0060255,GO:0060304,GO:0065007,GO:0065008,GO:0065009,GO:0071545,GO:0071704,GO:0071804,GO:0071805,GO:0071900,GO:0071902,GO:0071944,GO:0072358,GO:0072359,GO:0080090,GO:0090407,GO:0097159,GO:0098590,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098772,GO:0106018,GO:0140096,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1902531,GO:1902533,GO:1903725,GO:2000145
EggNOG free text desc.phosphatidylinositol-3-phosphatase activity
EggNOG OGsKOG1089@1,KOG1089@2759
EC3.1.3.64,3.1.3.95
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko04121
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930087.265412-CDS-H-paniculata_contig3516:16775..168601622930087.265412-CDS-H-paniculata_contig3516:16775..16860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3516 16776..16860 -
1691481140.695799-CDS-H-paniculata_contig3516:16775..168601691481140.695799-CDS-H-paniculata_contig3516:16775..16860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3516 16776..16860 -
1622930087.3062174-CDS-H-paniculata_contig3516:17274..174531622930087.3062174-CDS-H-paniculata_contig3516:17274..17453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3516 17275..17453 -
1691481140.7118025-CDS-H-paniculata_contig3516:17274..174531691481140.7118025-CDS-H-paniculata_contig3516:17274..17453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3516 17275..17453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3516.9359.1prot_H-paniculata_contig3516.9359.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3516 16776..17453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3516.9359.1

>prot_H-paniculata_contig3516.9359.1 ID=prot_H-paniculata_contig3516.9359.1|Name=mRNA_H-paniculata_contig3516.9359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
ACLQLILDPYYRTLEGFEVLVEKEWCSFGHRFGLRAHSDSPTESSPVFLQ
WLDAVWQVLVQYPSSFEFTGHYLERLVEALYSAAFLNF
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mRNA from alignment at H-paniculata_contig3516:16776..17453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3516.9359.1 ID=mRNA_H-paniculata_contig3516.9359.1|Name=mRNA_H-paniculata_contig3516.9359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at H-paniculata_contig3516:16776..17453- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTGTTTGCAGCTGATCCTGGATCCCTACTACCGCACCCTGGAAGGGTT
CGAGGTCCTGGTGGAGAAGGAGTGGTGCTCTTTCGGACACAGGTTCGGCC
TACGGGCGCACTCTGACTCGCCGACGGAGTCGTCTCCGGTTTTTCTCCAG
TGGCTGGATGCTGTCTGGCAGGTACTAGTGTATTTTTGTTGGCTAATATG
ACCAATGTTAAGAGAAAAAACGGGAAGTGGGCATATGGCTCAGGTCGTAT
CGCAACACCGCAAGCCATCGCCGTCTTGTGTTTGTTCCGGTATCCTCCAC
GTGGTGCATACGAGTGTGCTGGTACAGAATTTTTAAAACCTACGATATTT
ATGAATAAATGTAGTTTCCGTGTCAAGGCGTACATGAGCCCTCAAGTTCG
GCGTTGAATCGGCTCACTGTAAACGTACGAGGTGCGCCTTCTGCATCGTT
TTTGCCGCAAAAATGATGAAATCTGCCGTTGCCGTCCCGCGTTTCCCCCC
CCCCCCCCCCCCGTTCGCCCTCTCGATCCCATGTTTTTTTTTGTCGTACT
GCTTTGGATGGTCCATTGTTTATGCGGGCTTTTAGCTGGTGAGGCAATAC
CCGTCATCGTTCGAGTTCACAGGGCACTATCTGGAGCGGCTGGTGGAGGC
GCTTTACAGCGCCGCGTTCCTCAACTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig3516:16776..17453-

>mRNA_H-paniculata_contig3516.9359.1 ID=mRNA_H-paniculata_contig3516.9359.1|Name=mRNA_H-paniculata_contig3516.9359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig3516:16776..17453- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTGTTTGCAGCTGATCCTGGATCCCTACTACCGCACCCTGGAAGGGTT
CGAGGTCCTGGTGGAGAAGGAGTGGTGCTCTTTCGGACACAGGTTCGGCC
TACGGGCGCACTCTGACTCGCCGACGGAGTCGTCTCCGGTTTTTCTCCAG
TGGCTGGATGCTGTCTGGCAGGTACTAGTGCCTGTTTGCAGCTGATCCTG
GATCCCTACTACCGCACCCTGGAAGGGTTCGAGGTCCTGGTGGAGAAGGA
GTGGTGCTCTTTCGGACACAGGTTCGGCCTACGGGCGCACTCTGACTCGC
CGACGGAGTCGTCTCCGGTTTTTCTCCAGTGGCTGGATGCTGTCTGGCAG
GTACTAGTGCAATACCCGTCATCGTTCGAGTTCACAGGGCACTATCTGGA
GCGGCTGGTGGAGGCGCTTTACAGCGCCGCGTTCCTCAACTTTGCAATAC
CCGTCATCGTTCGAGTTCACAGGGCACTATCTGGAGCGGCTGGTGGAGGC
GCTTTACAGCGCCGCGTTCCTCAACTTT
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