mRNA_H-paniculata_contig35154.9356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35154.9356.1
Unique NamemRNA_H-paniculata_contig35154.9356.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35154.9356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35154contigH-paniculata_contig35154:196..897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35154.9356.1prot_H-paniculata_contig35154.9356.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35154 224..828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.759346-UTR-H-paniculata_contig35154:195..2231622930086.759346-UTR-H-paniculata_contig35154:195..223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35154 196..223 +
1691481140.5647871-UTR-H-paniculata_contig35154:195..2231691481140.5647871-UTR-H-paniculata_contig35154:195..223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35154 196..223 +
1622930086.8175247-UTR-H-paniculata_contig35154:828..8971622930086.8175247-UTR-H-paniculata_contig35154:828..897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35154 829..897 +
1691481140.597529-UTR-H-paniculata_contig35154:828..8971691481140.597529-UTR-H-paniculata_contig35154:828..897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35154 829..897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.7802198-CDS-H-paniculata_contig35154:223..4311622930086.7802198-CDS-H-paniculata_contig35154:223..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35154 224..431 +
1691481140.5750859-CDS-H-paniculata_contig35154:223..4311691481140.5750859-CDS-H-paniculata_contig35154:223..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35154 224..431 +
1622930086.8019645-CDS-H-paniculata_contig35154:772..8281622930086.8019645-CDS-H-paniculata_contig35154:772..828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35154 773..828 +
1691481140.5856943-CDS-H-paniculata_contig35154:772..8281691481140.5856943-CDS-H-paniculata_contig35154:772..828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35154 773..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35154.9356.1

>prot_H-paniculata_contig35154.9356.1 ID=prot_H-paniculata_contig35154.9356.1|Name=mRNA_H-paniculata_contig35154.9356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MTDGSLSTKCAAKLVVVSIAGEKTLLNPSTSTDARPNKLFQSVKDSLHPR
RTVAIMVPHPWHLHAERIHSALTHALRITHFSSSTSV*
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mRNA from alignment at H-paniculata_contig35154:196..897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35154.9356.1 ID=mRNA_H-paniculata_contig35154.9356.1|Name=mRNA_H-paniculata_contig35154.9356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=702bp|location=Sequence derived from alignment at H-paniculata_contig35154:196..897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCCTCTTGCAGCTGGGTCGGCGGCCATGACAGATGGGAGTCTGTCCA
CCAAGTGTGCGGCCAAATTGGTGGTTGTCTCCATTGCAGGAGAAAAGACC
CTCCTCAACCCTTCCACATCAACCGACGCCCGACCAAACAAGCTATTCCA
ATCCGTGAAAGACAGCCTGCACCCCCGTAGGACTGTCGCAATCATGGTAC
CTCACCCTTGGCATCTGCACGCTGAACGCATCCACAGTGAGTATTTTGTC
TTTGCTGTTTGTGCAACTTTATAAAAAATACGCCATTGCTGTAACATGGA
AGCCCATTGACCGCTTCAGCCCATTATACCCAATGGTCTATGGGAGGAGA
AAGTAGCGTGTACACGGCATAGTAGAGTGTGCAACATGATTGCATCAAGG
TGTAATGTGAACGTGCGATTGGAGTATCACTGGACGTCCATTCTACGTTT
TTTCACGTGTTGCACGATAAACTCCGCCTGTTGAGGCATATGAACGACCA
CGGAGGTATTGGAGCACACACATCGGGTGTATTCCAAACATCAATGCATT
CCGTCGACTTTCTTACTGTGTTTGCAGGTGCTCTGACCCATGCATTGAGG
ATCACCCACTTCTCCTCCAGTACAAGTGTATGAGGGCCGGGCGCACATCG
CAGAATGCTGTCAATCATCTACGTTACAATGCAGACATGGTGATGTTGGC
AC
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Coding sequence (CDS) from alignment at H-paniculata_contig35154:196..897+

>mRNA_H-paniculata_contig35154.9356.1 ID=mRNA_H-paniculata_contig35154.9356.1|Name=mRNA_H-paniculata_contig35154.9356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig35154:196..897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGATGGGAGTCTGTCCACCAAGTGTGCGGCCAAATTGGTGGTTGT
CTCCATTGCAGGAGAAAAGACCCTCCTCAACCCTTCCACATCAACCGACG
CCCGACCAAACAAGCTATTCCAATCCGTGAAAGACAGCCTGCACCCCCGT
AGGACTGTCGCAATCATGGTACCTCACCCTTGGCATCTGCACGCTGAACG
CATCCACAATGACAGATGGGAGTCTGTCCACCAAGTGTGCGGCCAAATTG
GTGGTTGTCTCCATTGCAGGAGAAAAGACCCTCCTCAACCCTTCCACATC
AACCGACGCCCGACCAAACAAGCTATTCCAATCCGTGAAAGACAGCCTGC
ACCCCCGTAGGACTGTCGCAATCATGGTACCTCACCCTTGGCATCTGCAC
GCTGAACGCATCCACAGTGCTCTGACCCATGCATTGAGGATCACCCACTT
CTCCTCCAGTACAAGTGTATGAGTGCTCTGACCCATGCATTGAGGATCAC
CCACTTCTCCTCCAGTACAAGTGTATGA
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