mRNA_H-paniculata_contig3515.9355.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3515.9355.1
Unique NamemRNA_H-paniculata_contig3515.9355.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3515.9355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3515contigH-paniculata_contig3515:3798..5492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size460
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3515.9355.1prot_H-paniculata_contig3515.9355.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3515 3798..5492 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.6447163-CDS-H-paniculata_contig3515:3797..40101622930086.6447163-CDS-H-paniculata_contig3515:3797..4010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 3798..4010 -
1691481140.534547-CDS-H-paniculata_contig3515:3797..40101691481140.534547-CDS-H-paniculata_contig3515:3797..4010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 3798..4010 -
1622930086.66179-CDS-H-paniculata_contig3515:5064..52081622930086.66179-CDS-H-paniculata_contig3515:5064..5208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 5065..5208 -
1691481140.544786-CDS-H-paniculata_contig3515:5064..52081691481140.544786-CDS-H-paniculata_contig3515:5064..5208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 5065..5208 -
1622930086.678557-CDS-H-paniculata_contig3515:5390..54921622930086.678557-CDS-H-paniculata_contig3515:5390..5492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 5391..5492 -
1691481140.5545287-CDS-H-paniculata_contig3515:5390..54921691481140.5545287-CDS-H-paniculata_contig3515:5390..5492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3515 5391..5492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3515.9355.1

>prot_H-paniculata_contig3515.9355.1 ID=prot_H-paniculata_contig3515.9355.1|Name=mRNA_H-paniculata_contig3515.9355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
KEGNECRDEEKGVGAVETGMKKIDAEELFRRKKKFTYHVTFSGWAKSYDK
SKAERALLERNRRAEAARQDDLQRRRAAEEFQKWLSSHNGRPTATVGPAP
GETAERGFATGSTAKKGVEHGGAESEDLAAAAKETGEVNNIASPQRVGTI
ARS
back to top

mRNA from alignment at H-paniculata_contig3515:3798..5492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3515.9355.1 ID=mRNA_H-paniculata_contig3515.9355.1|Name=mRNA_H-paniculata_contig3515.9355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1695bp|location=Sequence derived from alignment at H-paniculata_contig3515:3798..5492- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGAAGGCAATGAGTGTAGAGACGAGGAAAAAGGGGTGGGAGCTGTTGA
AACGGGCATGAAGAAAATCGATGCGGAGGAGCTGTTTCGGCGAAAGAAAA
AGGTGAGGACAGGAACAAAAAAAGAGTAAAGGTCGATATTTCAGTTTTCC
TTGTTTTCTATTCTAGAGTAACAACGCTCCTGGAAGGATTGTATCACACG
AAGCAGAAATATTCCGCCCACTTAAGAAACCCGTTTGCCTCGTACATACC
TACTCACCTGCCGCCTTTTGCTACCTGGTCGCAGTTTACGTACCATGTGA
CTTTCAGCGGCTGGGCCAAGAGCTACGACAAAAGCAAGGCAGAACGAGCC
TTGCTCGAGAGGAACCGACGGGCCGAAGCCGCGAGGCAAGATGATCTCCA
GCGGCGGCGTGCGGCGGAAGAATTCCAGGTGAAATTATTACTACGTTCGT
TTTTTGTGTCCTCGTTACTTGATGTGGTGTAAGTAAGGTAGTCGTCATTA
TCGTCATGTCGGATTTCGGAATATCGTGTCAAGTCTGTCCTTGAGTAAAT
TCTAAAACAGGAATCTTGCGCGAGCTAGCGAATCGCAGCCACCCCCTCCG
CCGGTGAAAGGATGTCACCTGAGGCAGAAAAAATACGCCTGCCGTCTTTA
TGTCTCTTCAAAATTGAGAATGGAAAAATATGGTGATTTCTTTTTTCGCA
TGCGGATTAGCCGGATTTCTTCCAAATTCTGGGGCGCAGATATGGCGTCG
AGGTGCAGGTCAACCCCGTGGCTCCCGGGTAGGCAAAGCAAGATGACACA
AAAATCAAGTGCAGGACATATACTTACTATGGTAGGCGCGCGAGTGCCCT
CTCCACCACCTTAGATTTGTTTTGTGGCAGAGACGGTCGGAAACTTGTGA
AGGGTGTTAACGTGCATGAAACAAATAGTGATTTACTAGTCCCACGACTT
GCGGGCATGATTGCGTATTGTTAATATACTTGTTTTATTATTCGGGGTGT
GGTTCTTGCTACCACCCGTCCCCCGTACTACCGATTTGCAGTAAATGTCA
AAATTCATCGGGGCTGAATAGAGCTTACCTGACCGGCTAAAGTCGCAGGT
TTGATGTTTCAGTTGGCTGTTCAAATATCAAATGCTTCGCACATGGCTTT
GACCTAACTCTGTATATATATATATATAGTGTACTCGAGTACACTTCTAG
TTATATTATGTACACACCAGGTGTGATGTGAACTCAACAAGGAATCAACG
AGCCCCCCAACAAAATGCCGAAGTCTACGCCTTGCAACACAAAAGGTAAA
GCCAGGACAAAAGGTGAAACACTCGCGCGAAGTGTCAAAGTTGTGAATTA
CCTTAAATGGATGGAAAACCATAATACGAACAACCTAGTTTGCAATGCTG
CACGGGCCAGTTGGGAGATTTTGCCACGTTTTTCACGATGATTCAGCATA
TTGTGTTATCTCATGTATCGTGTCCTGTGCAGAAATGGCTCTCCAGTCAC
AACGGGCGGCCGACGGCAACGGTAGGCCCTGCCCCCGGAGAGACTGCGGA
GCGAGGTTTTGCCACAGGGTCCACGGCGAAGAAAGGTGTGGAGCACGGTG
GCGCCGAGAGTGAAGACCTCGCCGCTGCAGCGAAGGAAACGGGAGAAGTC
AATAACATTGCCTCGCCACAGAGGGTCGGCACCATCGCGAGGAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3515:3798..5492-

>mRNA_H-paniculata_contig3515.9355.1 ID=mRNA_H-paniculata_contig3515.9355.1|Name=mRNA_H-paniculata_contig3515.9355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig3515:3798..5492- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGAAGGCAATGAGTGTAGAGACGAGGAAAAAGGGGTGGGAGCTGTTGA
AACGGGCATGAAGAAAATCGATGCGGAGGAGCTGTTTCGGCGAAAGAAAA
AGAAAGAAGGCAATGAGTGTAGAGACGAGGAAAAAGGGGTGGGAGCTGTT
GAAACGGGCATGAAGAAAATCGATGCGGAGGAGCTGTTTCGGCGAAAGAA
AAAGTTTACGTACCATGTGACTTTCAGCGGCTGGGCCAAGAGCTACGACA
AAAGCAAGGCAGAACGAGCCTTGCTCGAGAGGAACCGACGGGCCGAAGCC
GCGAGGCAAGATGATCTCCAGCGGCGGCGTGCGGCGGAAGAATTCCAGTT
TACGTACCATGTGACTTTCAGCGGCTGGGCCAAGAGCTACGACAAAAGCA
AGGCAGAACGAGCCTTGCTCGAGAGGAACCGACGGGCCGAAGCCGCGAGG
CAAGATGATCTCCAGCGGCGGCGTGCGGCGGAAGAATTCCAGAAATGGCT
CTCCAGTCACAACGGGCGGCCGACGGCAACGGTAGGCCCTGCCCCCGGAG
AGACTGCGGAGCGAGGTTTTGCCACAGGGTCCACGGCGAAGAAAGGTGTG
GAGCACGGTGGCGCCGAGAGTGAAGACCTCGCCGCTGCAGCGAAGGAAAC
GGGAGAAGTCAATAACATTGCCTCGCCACAGAGGGTCGGCACCATCGCGA
GGAGCAAATGGCTCTCCAGTCACAACGGGCGGCCGACGGCAACGGTAGGC
CCTGCCCCCGGAGAGACTGCGGAGCGAGGTTTTGCCACAGGGTCCACGGC
GAAGAAAGGTGTGGAGCACGGTGGCGCCGAGAGTGAAGACCTCGCCGCTG
CAGCGAAGGAAACGGGAGAAGTCAATAACATTGCCTCGCCACAGAGGGTC
GGCACCATCGCGAGGAGC
back to top