mRNA_H-paniculata_contig35144.9353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35144.9353.1
Unique NamemRNA_H-paniculata_contig35144.9353.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: A0A6H5JFD9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.470e-22
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:   20 LMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            L S QL SV+ +VF EL NMDQT  QHEM +ETTLE TG KDARIST GKEKERFTL  AVM DG+K +PRI F
Sbjct:  268 LTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIF 341
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 7.140e-21
Identity = 51/74 (68.92%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:   20 LMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            L S QL SV+ +VF EL NMDQT  QHE+ +ETTLE TG KDARIST GKEKERFTL  AVM DG+K +PRI F
Sbjct:  101 LTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIF 174
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 9.230e-21
Identity = 51/74 (68.92%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:   20 LMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            L S QL SV+ +VF EL NMDQT  QHEM +ETTLE TG KDARIST G+EKERFTL  AVM DG+K +PRI F
Sbjct:  283 LTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGEEKERFTLVLAVMADGKKVSPRIIF 356
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.060e-20
Identity = 51/74 (68.92%), Postives = 56/74 (75.68%), Query Frame = 2 
Query:   20 LMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            L   QL SV+ +VF EL NMDQT  QHEM +ETTLE TG KDARIST GKEKERFTL  AVM DG+K +PRI F
Sbjct:  101 LTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIF 174
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: D7G5E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.210e-19
Identity = 49/74 (66.22%), Postives = 53/74 (71.62%), Query Frame = 2 
Query:   20 LMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            L S QL SV  +VF EL NMDQT  QHEM +ET LE TG KDARI+T GKEKERFTLC AV  DG+K   RI F
Sbjct:   39 LTSEQLESVTAEVFVELGNMDQTPVQHEMLVETALEKTGAKDARIATGGKEKERFTLCLAVTGDGKKVPLRIIF 112
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.390e-19
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:   20 LMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            L SSQL  V +++F EL NMDQT  QHEM +ETTLE TG KDARI+T GKEKERFTLC AV  DG+K   RI F
Sbjct:  255 LSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIF 328
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: A0A6H5K417_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K417_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.270e-18
Identity = 50/78 (64.10%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:    8 RWSYLMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            R + L S QL SV+ +VF EL NM QT  Q EM +ETTLE TG KDARIST GKE ERFTL  AVM DG+K +PRI F
Sbjct:  358 REALLTSEQLASVEAEVFEELGNMKQTPVQQEMPVETTLEKTGAKDARISTGGKENERFTLVPAVMADGKKVSPRIIF 435
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.730e-18
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:   20 LMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            L S QL SV+ +VF +L NMDQT  QHEM +ETTLE TG KDAR+ST G+EKERFTL  AV  DG+K + RI F
Sbjct:   35 LTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIF 108
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.660e-18
Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:   20 LMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            L S Q  SV+ +VF EL NMDQT  QHEM +ETTLE TG KDARIST GKEKERFTL  AVM DG+  +P I F
Sbjct:  255 LTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIF 328
[Close]
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.020e-17
Identity = 49/74 (66.22%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:   20 LMSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKEKERFTLCFAVMRDGRKGTPRITF 241
            L  +QL SV  +VF EL NMDQT  Q EM +ETTLE  G KDARIST GKEKERFTLC AVM DG K   RI F
Sbjct:  274 LSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIF 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35144.9353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFD9_9PHAE9.470e-2270.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6L9_9PHAE7.140e-2168.92DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE9.230e-2168.92DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE1.060e-2068.92DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G5E8_ECTSI3.210e-1966.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8Y4_9PHAE5.390e-1966.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K417_9PHAE2.270e-1864.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KII4_9PHAE3.730e-1863.51DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE4.660e-1866.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE3.020e-1766.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35144contigH-paniculata_contig35144:891..1507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue7.3e-14
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons2
Model size243
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35144.9353.1prot_H-paniculata_contig35144.9353.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35144 913..1507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.4731834-UTR-H-paniculata_contig35144:890..9121622930086.4731834-UTR-H-paniculata_contig35144:890..912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35144 891..912 +
1691481140.4606712-UTR-H-paniculata_contig35144:890..9121691481140.4606712-UTR-H-paniculata_contig35144:890..912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35144 891..912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930086.484613-CDS-H-paniculata_contig35144:912..10541622930086.484613-CDS-H-paniculata_contig35144:912..1054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35144 913..1054 +
1691481140.4730842-CDS-H-paniculata_contig35144:912..10541691481140.4730842-CDS-H-paniculata_contig35144:912..1054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35144 913..1054 +
1622930086.4974067-CDS-H-paniculata_contig35144:1430..15071622930086.4974067-CDS-H-paniculata_contig35144:1430..1507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35144 1431..1507 +
1691481140.483791-CDS-H-paniculata_contig35144:1430..15071691481140.483791-CDS-H-paniculata_contig35144:1430..1507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35144 1431..1507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35144.9353.1

>prot_H-paniculata_contig35144.9353.1 ID=prot_H-paniculata_contig35144.9353.1|Name=mRNA_H-paniculata_contig35144.9353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MSSQLLSVQEDVFGELRNMDQTLTQHEMTMETTLETTGVKDARISTAGKE
KERFTLCFAVMRDGRKGTPRITF
back to top

mRNA from alignment at H-paniculata_contig35144:891..1507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35144.9353.1 ID=mRNA_H-paniculata_contig35144.9353.1|Name=mRNA_H-paniculata_contig35144.9353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at H-paniculata_contig35144:891..1507+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGAAGCGATGGAGCTATCTCATGAGCAGCCAGCTGTTATCGGTACAGG
AGGACGTGTTCGGCGAGTTGAGGAACATGGATCAAACCCTAACCCAGCAC
GAGATGACGATGGAGACCACGCTTGAGACGACTGGGGTGAAGGACGCGCG
TATTTCGACGGCAGGTAAGGCCGCCGAATGCTCGTATAGTACAGTACCTG
TGGTAAAATTGTCAGTTTAGTTGCAGAAAACGTTCATGTCTGTAATTTTA
CAGTTTGTGTTTTGTTTTCTTGCGTTGATATTAGAGTGCTTTCCCATATT
GTACTGCACTAATCGTACTGACTGACTACGGTAGTAGAGTCAGTGCTCTG
TACATTTGTCTAATGTACTGCACTGTGCTATACGGACTGTACACTCCTGA
CTGTATTTTGTATGTGTGTGTTTTTTTGCTGCACTGACTGTAGTTATGTC
GTATTTCAGATTCAAAGCTACCGACTATACTCGATCACGATAAAGTTAAT
TGACCATGCTCCGTTCCTGTTGCTTTCTCAACCTCCGTAGGCAAGGAGAA
GGAGCGCTTTACACTTTGTTTCGCTGTGATGCGTGATGGACGAAAGGGGA
CTCCGCGCATCACTTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig35144:891..1507+

>mRNA_H-paniculata_contig35144.9353.1 ID=mRNA_H-paniculata_contig35144.9353.1|Name=mRNA_H-paniculata_contig35144.9353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig35144:891..1507+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAGCCAGCTGTTATCGGTACAGGAGGACGTGTTCGGCGAGTTGAG
GAACATGGATCAAACCCTAACCCAGCACGAGATGACGATGGAGACCACGC
TTGAGACGACTGGGGTGAAGGACGCGCGTATTTCGACGGCAGATGAGCAG
CCAGCTGTTATCGGTACAGGAGGACGTGTTCGGCGAGTTGAGGAACATGG
ATCAAACCCTAACCCAGCACGAGATGACGATGGAGACCACGCTTGAGACG
ACTGGGGTGAAGGACGCGCGTATTTCGACGGCAGGCAAGGAGAAGGAGCG
CTTTACACTTTGTTTCGCTGTGATGCGTGATGGACGAAAGGGGACTCCGC
GCATCACTTTCGCAAGGAGAAGGAGCGCTTTACACTTTGTTTCGCTGTGA
TGCGTGATGGACGAAAGGGGACTCCGCGCATCACTTTC
back to top