mRNA_H-paniculata_contig3512.9349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3512.9349.1
Unique NamemRNA_H-paniculata_contig3512.9349.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3512.9349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3512contigH-paniculata_contig3512:7088..7445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930085.966313-CDS-H-paniculata_contig3512:7087..74381622930085.966313-CDS-H-paniculata_contig3512:7087..7438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3512 7088..7438 +
1691481140.2128775-CDS-H-paniculata_contig3512:7087..74381691481140.2128775-CDS-H-paniculata_contig3512:7087..7438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3512 7088..7438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930085.9847353-UTR-H-paniculata_contig3512:7438..74451622930085.9847353-UTR-H-paniculata_contig3512:7438..7445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3512 7439..7445 +
1691481140.2322485-UTR-H-paniculata_contig3512:7438..74451691481140.2322485-UTR-H-paniculata_contig3512:7438..7445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3512 7439..7445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3512.9349.1prot_H-paniculata_contig3512.9349.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3512 7088..7438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3512.9349.1

>prot_H-paniculata_contig3512.9349.1 ID=prot_H-paniculata_contig3512.9349.1|Name=mRNA_H-paniculata_contig3512.9349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
GSDWFRSRFGWLRSGFDRFWGRFDWFPSRFDRFRGTFLRFWSRLNGFRNR
FCWLRGRFDQSRGILNWFRGRFQRRVRRRRGRSWNRPIWERVQELGQRER
NQFSSLGLLVTYVMSR*
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mRNA from alignment at H-paniculata_contig3512:7088..7445+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3512.9349.1 ID=mRNA_H-paniculata_contig3512.9349.1|Name=mRNA_H-paniculata_contig3512.9349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=358bp|location=Sequence derived from alignment at H-paniculata_contig3512:7088..7445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGCGACTGGTTCCGTAGTAGGTTCGGCTGGCTCCGGAGTGGGTTCGA
CCGGTTCTGGGGTAGGTTCGATTGGTTCCCTAGTAGGTTCGACCGGTTCC
GGGGTACGTTCCTCCGGTTCTGGAGTAGGCTCAACGGGTTCCGGAATAGG
TTCTGCTGGCTCCGGGGTAGGTTTGACCAGTCTCGGGGCATCCTCAACTG
GTTCCGGGGTAGATTTCAGAGGAGGGTTCGTCGCCGTCGGGGTAGGAGCT
GGAACAGACCCATCTGGGAGCGGGTGCAGGAATTGGGACAGAGAGAACGA
AACCAGTTTTCAAGTTTGGGTTTACTAGTTACATATGTCATGTCCCGATA
ATGGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3512:7088..7445+

>mRNA_H-paniculata_contig3512.9349.1 ID=mRNA_H-paniculata_contig3512.9349.1|Name=mRNA_H-paniculata_contig3512.9349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig3512:7088..7445+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGCGACTGGTTCCGTAGTAGGTTCGGCTGGCTCCGGAGTGGGTTCGA
CCGGTTCTGGGGTAGGTTCGATTGGTTCCCTAGTAGGTTCGACCGGTTCC
GGGGTACGTTCCTCCGGTTCTGGAGTAGGCTCAACGGGTTCCGGAATAGG
TTCTGCTGGCTCCGGGGTAGGTTTGACCAGTCTCGGGGCATCCTCAACTG
GTTCCGGGGTAGATTTCAGAGGAGGGTTCGTCGCCGTCGGGGTAGGAGCT
GGAACAGACCCATCTGGGAGCGGGTGCAGGAATTGGGACAGAGAGAACGA
AACCAGTTTTCAAGTTTGGGTTTACTAGTTACATATGTCATGTCCCGATA
AGGAAGCGACTGGTTCCGTAGTAGGTTCGGCTGGCTCCGGAGTGGGTTCG
ACCGGTTCTGGGGTAGGTTCGATTGGTTCCCTAGTAGGTTCGACCGGTTC
CGGGGTACGTTCCTCCGGTTCTGGAGTAGGCTCAACGGGTTCCGGAATAG
GTTCTGCTGGCTCCGGGGTAGGTTTGACCAGTCTCGGGGCATCCTCAACT
GGTTCCGGGGTAGATTTCAGAGGAGGGTTCGTCGCCGTCGGGGTAGGAGC
TGGAACAGACCCATCTGGGAGCGGGTGCAGGAATTGGGACAGAGAGAACG
AAACCAGTTTTCAAGTTTGGGTTTACTAGTTACATATGTCATGTCCCGAT
AA
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