mRNA_H-paniculata_contig35119.9348.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35119.9348.1
Unique NamemRNA_H-paniculata_contig35119.9348.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35119.9348.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 8.290e-26
Identity = 70/146 (47.95%), Postives = 91/146 (62.33%), Query Frame = 1 
Query:   10 GRTSENAINHLRYNADMVMLAHNDPGDGAGFTCNKRVLVDDLNGNSSSPVRAALPLMNDIPVESAKTDIPPRCCLFLVNRYSNMGDTVISLGAESNQTMETALDRARKVEVFVASSDGAREEVARRAETAFLAAYKEEKFKVVPSL 447
            GR    A NHL+ + DMV+L HN+   GA FTCNKRV VDD  G  S     ++ LM D+  E A TDI  R   FL+NRY++ GDTV SL AE +  +E AL+R+R+VEVFVA+ +  +EEV +    +F  AYK  K+K   SL
Sbjct:  437 GRPPIRAENHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSD-ASPSMQLMTDVEYEGAATDIVMRPLHFLINRYTHAGDTVASLSAERHNVVEAALERSRRVEVFVANPNS-KEEVRKNLLASFSRAYKAGKWKASTSL 577
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BLAST of mRNA_H-paniculata_contig35119.9348.1 vs. uniprot
Match: A0A6H5JTW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.230e-25
Identity = 68/152 (44.74%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:    7 AGRTSENAINHLRYNADMVMLAH-------NDPGDGAGFTCNKRVLVDDLNGNSS--SPVRAALPLMNDIPVESAKTDIPPRCCLFLVNRYSNMGDTVISLGAESNQTMETALDRARKVEVFVASSDGAREEVARRAETAFLAAYKEEKFKV 435
            AGR +  A  HL+++ D VML H       N P DG  FT N++V  DDL GNS+  S       ++ DI       D P +  +FLVNRYS  GDTV+  GAE N  +ETA+ R RKVE FVAS + A + V  R E AF  AY +  FKV
Sbjct:   19 AGRPASAANGHLKFSQDAVMLVHLTSFSSSNSPTDG--FTVNEKVTTDDLYGNSTAASVTSQCSSILTDIQHPGKGVDWPTKALMFLVNRYSRQGDTVLLFGAEHNTGVETAISRGRKVEAFVASPEAAAK-VEARTEIAFQTAYAQGIFKV 167
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BLAST of mRNA_H-paniculata_contig35119.9348.1 vs. uniprot
Match: A0A6H5JEK0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.420e-22
Identity = 69/153 (45.10%), Postives = 86/153 (56.21%), Query Frame = 1 
Query:    4 RAGRTSENAINHLRYNADMVMLAH-------NDPGDGAGFTCNKRVLVDDLNGNSS--SPVRAALPLMNDIPVESAKTDIPPRCCLFLVNRYSNMGDTVISLGAESNQTMETALDRARKVEVFVASSDGAREEVARRAETAFLAAYKEEKFKV 435
            RAGR +  A  HL+++ D VML H       N P DG  FT N++V  DDL GNS+  S       ++ DI       D P +  +FLVNRYS  GDTV+  GAE N  +ETA+ R RKVE FVAS + A  +V  R E AF  AY +  FKV
Sbjct:  520 RAGRPASAANGHLKFSQDAVMLVHLTSFSSSNSPTDG--FTVNEKVTTDDLYGNSTAASVTSQCSSILTDIQHPGKGVDWP-KALMFLVNRYSRQGDTVLLFGAEHNTRVETAITRGRKVEAFVASPEAA-VKVEARTEIAFQTAYAQGIFKV 668
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35119.9348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE8.290e-2647.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTW8_9PHAE3.230e-2544.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEK0_9PHAE8.420e-2245.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35119contigH-paniculata_contig35119:3..1865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size502
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35119.9348.1prot_H-paniculata_contig35119.9348.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35119 3..1865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930085.8933916-CDS-H-paniculata_contig35119:2..711622930085.8933916-CDS-H-paniculata_contig35119:2..71Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35119 3..71 -
1691481140.1798043-CDS-H-paniculata_contig35119:2..711691481140.1798043-CDS-H-paniculata_contig35119:2..71Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35119 3..71 -
1622930085.9077766-CDS-H-paniculata_contig35119:1083..12671622930085.9077766-CDS-H-paniculata_contig35119:1083..1267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35119 1084..1267 -
1691481140.1884508-CDS-H-paniculata_contig35119:1083..12671691481140.1884508-CDS-H-paniculata_contig35119:1083..1267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35119 1084..1267 -
1622930085.9222064-CDS-H-paniculata_contig35119:1617..18651622930085.9222064-CDS-H-paniculata_contig35119:1617..1865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35119 1618..1865 -
1691481140.196312-CDS-H-paniculata_contig35119:1617..18651691481140.196312-CDS-H-paniculata_contig35119:1617..1865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35119 1618..1865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35119.9348.1

>prot_H-paniculata_contig35119.9348.1 ID=prot_H-paniculata_contig35119.9348.1|Name=mRNA_H-paniculata_contig35119.9348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MRAGRTSENAINHLRYNADMVMLAHNDPGDGAGFTCNKRVLVDDLNGNSS
SPVRAALPLMNDIPVESAKTDIPPRCCLFLVNRYSNMGDTVISLGAESNQ
TMETALDRARKVEVFVASSDGAREEVARRAETAFLAAYKEEKFKVVPSLH
SKEGESYSPNERDLPVW
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mRNA from alignment at H-paniculata_contig35119:3..1865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35119.9348.1 ID=mRNA_H-paniculata_contig35119.9348.1|Name=mRNA_H-paniculata_contig35119.9348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1863bp|location=Sequence derived from alignment at H-paniculata_contig35119:3..1865- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCCGGGCGCACATCGGAGAATGCTATCAATCATCTACGTTACAA
TGCAGACATGGTGATGTTGGCACACAACGATCCGGGTGACGGGGCAGGCT
TCACGTGCAACAAGCGTGTACTGGTGGACGATCTCAACGGCAACAGCAGC
AGTCCCGTCAGAGCAGCCCTCCCATTGATGAACGACATACCTGTGGAGAG
TGCCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGGT
GAAAATAGTTGTTACTACTTGAGCAGGGTTGTGGTTCATGTTTGCATATT
CCTCATTTTAAGGCTGCATGTTTTTCTCTTCTATGTCGTTGTTGTTGGTA
TTGGAGCGCTCTACAACCATCACGAGCATAACAGTAAGTAACTAGAGAAC
TGGTGTTGGGGCGTCATTGTGACCATCTAAAAAACTTCTTGTGTTGACAC
GCCATACAGACACCACCACGAGGTACCTGCTATATGACAATGAGGTATAC
TGGTTAGGCCTTGGTCATGTACTTGGCAAAAATCCCTTCTTTTTGCCAAC
TTATCGTCAGTACTACTGATAATGCCTTGTTCTTATTTGGTCTGGCAGAT
ACTCCAACATGGGAGATACAGTCATATCGCTGGGCGCTGAGAGTAATCAA
ACTATGGAGACGGCGCTTGATCGTGCGAGGAAAGTTGAGGTCTTCGTGGC
TTCTTCTGATGGTGCGCGAGAAGAGGTTGCAAGGCGAGCAGAAACGGCTT
TCTTGGCGGCTTACAAGGAGGAGAAATTCAAGGTCAGTACGGAGTCGGAG
ATTGTCCAATGTTTGGTGTGGTGTTGTGTGCGACAGTCATCAATATCTAC
AAGTAAATGTGCTACGCAAGCACTATCACTATCTGCAGTACCAAACAGCT
GAGCCAGTTATGAAAACTTTGTCAACGCCGATTGACAGAGATGCCTTCGT
AGTAGTGGCACCCGAAGAAAGCCACCTAAGGCGTGGACAATAGAACGTAT
TAATGAACGGAAGCCGAATTGTTTAGTTGACATTGATGCGTGTTGAGAAG
CTGTTTTGTTCGCGCTTCCGTTTCTTGATGATGCAGACACTGTTTAATAT
GTTGTGTATAATGCGCACGTTGACTACTATGTACTATATTCCCCCATACT
CCCCTTGTCATACAGGCATCATTATCCCCGGCCGATGAGGTTCTCATTTG
CCATGGTATTCTACCGGAGAGGGTCCCAGTTGATACAACGCCTGCCAAAA
TGAAAGCAATGGTGGCAGCAGAAGTGGAAAGGTAATGCGCCACTTTGAAG
GCTCAGAGACAGGCAGAGATCAACGATGGTTTGAGCACTTACGAGCTTAA
TGAAGAAGAAAAACACGAGGCCCAAGACATAGCAGCACACAAAATCAACG
AGACCGTCACCCTGAGCTTTGGCTACACCCTCGCCTCTAGCGGGTCATGA
GAGGAGGACGTAAGCAGGCGCTCAATACTGTCTTTTGTCTAGGTTTTAGA
TCCACAGTAGAACAAGCAATTAGCAAGGGTTATGTGTCCTTGTCGTAAGT
AGTGGAGATGTATGTTGGACTTACGTACGAAAGGGCGGGATTTTGGCAGA
GCGACACCCTACCCTTCATCGTTTCATATGCTGGCTGCATTATTGCTGCG
TCTGTGCCTTATGTTTATGAACATTAATGTTGATCATCTGCTGAACTTTT
TACAGGTGACTGGGTAAAACGTTTGTCATGGCTGCTTCTCACAATGTTGT
CCGCACGAACCTACCGTCTTTGATATGGCTTTACTTACAAACAGGTCGTT
CCTTCTCTGCATTCCAAGGAAGGCGAATCGTACAGTCCCAATGAACGCGA
TCTTCCTGTCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig35119:3..1865-

>mRNA_H-paniculata_contig35119.9348.1 ID=mRNA_H-paniculata_contig35119.9348.1|Name=mRNA_H-paniculata_contig35119.9348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig35119:3..1865- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCCGGGCGCACATCGGAGAATGCTATCAATCATCTACGTTACAA
TGCAGACATGGTGATGTTGGCACACAACGATCCGGGTGACGGGGCAGGCT
TCACGTGCAACAAGCGTGTACTGGTGGACGATCTCAACGGCAACAGCAGC
AGTCCCGTCAGAGCAGCCCTCCCATTGATGAACGACATACCTGTGGAGAG
TGCCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGAT
GAGGGCCGGGCGCACATCGGAGAATGCTATCAATCATCTACGTTACAATG
CAGACATGGTGATGTTGGCACACAACGATCCGGGTGACGGGGCAGGCTTC
ACGTGCAACAAGCGTGTACTGGTGGACGATCTCAACGGCAACAGCAGCAG
TCCCGTCAGAGCAGCCCTCCCATTGATGAACGACATACCTGTGGAGAGTG
CCAAGACGGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGATAC
TCCAACATGGGAGATACAGTCATATCGCTGGGCGCTGAGAGTAATCAAAC
TATGGAGACGGCGCTTGATCGTGCGAGGAAAGTTGAGGTCTTCGTGGCTT
CTTCTGATGGTGCGCGAGAAGAGGTTGCAAGGCGAGCAGAAACGGCTTTC
TTGGCGGCTTACAAGGAGGAGAAATTCAAGATACTCCAACATGGGAGATA
CAGTCATATCGCTGGGCGCTGAGAGTAATCAAACTATGGAGACGGCGCTT
GATCGTGCGAGGAAAGTTGAGGTCTTCGTGGCTTCTTCTGATGGTGCGCG
AGAAGAGGTTGCAAGGCGAGCAGAAACGGCTTTCTTGGCGGCTTACAAGG
AGGAGAAATTCAAGGTCGTTCCTTCTCTGCATTCCAAGGAAGGCGAATCG
TACAGTCCCAATGAACGCGATCTTCCTGTCTGGGTCGTTCCTTCTCTGCA
TTCCAAGGAAGGCGAATCGTACAGTCCCAATGAACGCGATCTTCCTGTCT
GG
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