mRNA_H-paniculata_contig3511.9346.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3511.9346.1
Unique NamemRNA_H-paniculata_contig3511.9346.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: A0A835YPW9_9STRA (SPX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.270e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 3 
Query:  330 MKFAKHLAKAVNISDPEWAPYWINYKQLKKVIKK 431
            MKFAKHL KA+++SDPEW P+WINYK+LKK  K+
Sbjct:    1 MKFAKHLLKAIDLSDPEWLPFWINYKRLKKGCKR 34
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BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: A0A7S2E5A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E5A5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.380e-7
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:  327 DMKFAKHLAKAVNISDPEWAPYWINYKQLKKVIKK 431
            +MKF K+L + V+ISDPEWAPYW NYK LKK+IK+
Sbjct:   10 EMKFCKNLQRIVDISDPEWAPYWTNYKMLKKLIKE 44
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BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: B8BRX4_THAPS (SPX domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRX4_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 3.470e-7
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  330 MKFAKHLAKAVNISDPEWAPYWINYKQLKKVIKKSCRCHEPEGIAPPAGVEARGGRACSS 509
            MKF ++L + ++I+DPEWAPYW NYK LKK +K    C  P+G A     E+ GG A +S
Sbjct:    1 MKFCRNLQRVIDITDPEWAPYWTNYKMLKKFLKTLPSCVPPDGCAI---AESSGGAASAS 57
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BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: A0A7S2A9F4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9F4_TRICV)

HSP 1 Score: 60.8 bits (146), Expect = 1.680e-6
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  330 MKFAKHLAKAVNISDPEWAPYWINYKQLKKVIKK 431
            MKF K+L K V+ISDPEWAPYW NYK LKK+IK+
Sbjct:    1 MKFCKNLQKVVDISDPEWAPYWTNYKMLKKLIKE 34
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BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: A0A1Z5KR59_FISSO (SPX domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR59_FISSO)

HSP 1 Score: 60.5 bits (145), Expect = 1.690e-6
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 3 
Query:  330 MKFAKHLAKAVNISDPEWAPYWINYKQLKKVIK 428
            MKF K+L K V+ISDPEWAPYW NYK LKK+IK
Sbjct:    1 MKFCKNLQKVVDISDPEWAPYWTNYKMLKKLIK 33
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BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: D8LG46_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG46_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.400e-6
Identity = 23/30 (76.67%), Postives = 29/30 (96.67%), Query Frame = 3 
Query:  330 MKFAKHLAKAVNISDPEWAPYWINYKQLKK 419
            MKFAKHLA+A+++SDPEW P+W+NYKQLKK
Sbjct:    1 MKFAKHLARAMDVSDPEWHPFWVNYKQLKK 30
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BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: A0A7S0UNW1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UNW1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.240e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  330 MKFAKHLAKAVNISDPEWAPYWINYKQLKKVIKK 431
            MKF K+L + V+ISDPEWAPYW NYK LKK+IK+
Sbjct:    1 MKFCKNLQRVVDISDPEWAPYWTNYKMLKKLIKE 34
[Close]
BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: B7G3D1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3D1_PHATC)

HSP 1 Score: 59.7 bits (143), Expect = 3.380e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  330 MKFAKHLAKAVNISDPEWAPYWINYKQLKKVIKK 431
            MKF K+L + V+ISDPEWAPYW NYK LKK+IK+
Sbjct:    1 MKFCKNLQRVVDISDPEWAPYWTNYKMLKKLIKE 34
[Close]
BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: A0A1E7FRF2_9STRA (SPX domain-containing protein n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1E7FRF2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.890e-6
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  330 MKFAKHLAKAVNISDPEWAPYWINYKQLKKVIKK 431
            MKF K+L + V+ISDPEWAPYW NYK LKK+IK+
Sbjct:    1 MKFCKNLQRVVDISDPEWAPYWTNYKMLKKLIKE 34
[Close]
BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Match: A0A397DUX1_9STRA (SPX domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DUX1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.390e-6
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 3 
Query:  285 AHRARHSSRHKQR------TDMKFAKHLAKAVNISDPEWAPYWINYKQLKKVIK 428
            ++RA+  S H+ R      T MKF K L  AVN S+PEW P+W+NYK LKK IK
Sbjct:   12 SNRAQSRSAHRPRILAVRTTKMKFGKELLNAVNQSNPEWGPFWMNYKALKKRIK 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3511.9346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A835YPW9_9STRA6.270e-870.59SPX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2E5A5_9STRA3.380e-768.57Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
B8BRX4_THAPS3.470e-748.33SPX domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2A9F4_TRICV1.680e-673.53Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5KR59_FISSO1.690e-675.76SPX domain-containing protein n=2 Tax=Fistulifera ... [more]
D8LG46_ECTSI2.400e-676.67SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S0UNW1_9STRA3.240e-670.59Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
B7G3D1_PHATC3.380e-670.59Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FRF2_9STRA3.890e-670.59SPX domain-containing protein n=2 Tax=Bacillarioph... [more]
A0A397DUX1_9STRA5.390e-651.85SPX domain-containing protein n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3511contigH-paniculata_contig3511:9764..10926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue3e-07
Seed eggNOG ortholog35128.Thaps1779
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SPX domain
EggNOG OGs2XAN2@2836,COG5036@1,KOG1161@2759
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size1165
Cds size834
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930084.0044513-UTR-H-paniculata_contig3511:9763..100921622930084.0044513-UTR-H-paniculata_contig3511:9763..10092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3511 9764..10092 +
1691481139.9937758-UTR-H-paniculata_contig3511:9763..100921691481139.9937758-UTR-H-paniculata_contig3511:9763..10092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3511 9764..10092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930084.0200934-CDS-H-paniculata_contig3511:10092..109261622930084.0200934-CDS-H-paniculata_contig3511:10092..10926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3511 10093..10926 +
1691481140.0050335-CDS-H-paniculata_contig3511:10092..109261691481140.0050335-CDS-H-paniculata_contig3511:10092..10926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3511 10093..10926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3511.9346.1prot_H-paniculata_contig3511.9346.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3511 10093..10926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3511.9346.1

>prot_H-paniculata_contig3511.9346.1 ID=prot_H-paniculata_contig3511.9346.1|Name=mRNA_H-paniculata_contig3511.9346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=278bp
MKFAKHLAKAVNISDPEWAPYWINYKQLKKVIKKSCRCHEPEGIAPPAGV
EARGGRACSSKPTPPPPSASLYSTSDASAALAAAGVGSGGGSERRSTSLL
ASPKRRISTNSSTNKEHKRLDAPEQQPPVMAQARVTVATVAPPAQLSAGV
LHSPPLPEVPTPSHLRSRPWKRVRVRAEQEAESKQQQQQQQRLPASLLRP
TANATAHLEIYRPDLLNNKRRCIGAGNSTVVMTEKIIKQNGEVLSASHRV
PRNTGGSSGWSESGRRGERDAEGEKEGE
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mRNA from alignment at H-paniculata_contig3511:9764..10926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3511.9346.1 ID=mRNA_H-paniculata_contig3511.9346.1|Name=mRNA_H-paniculata_contig3511.9346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1163bp|location=Sequence derived from alignment at H-paniculata_contig3511:9764..10926+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGTCAACCTTTATTCTTCTTCCTTGTCTTGACTGAGCAATCCCCCCT
GAAGGTATGACCATTTTATCGGTCGAAAACTACATGGCGACATCGTATGC
CGTGCGAGCAAGTCGTTCAACCTGCAGTGGGGTTTACTTTTGTGTGATGT
GAGAGAAAGACGACGGAAGTTCACACCTCAGGACACAAGGAGCAGCTAGG
TCTCAAAAATTGTCATACACAAAGTTCACCCTTGAACTATTGTCTTAGAC
TACTGTGGAGAGCTAGCTGGCAAGACCCACCCTCGCCCACAGAGCACGGC
ATAGCAGCCGACACAAGCAACGCACAGATATGAAGTTCGCCAAGCATCTT
GCCAAGGCTGTAAACATATCGGACCCAGAGTGGGCGCCCTATTGGATCAA
CTACAAGCAATTGAAGAAGGTCATCAAAAAGTCTTGCAGATGTCACGAAC
CTGAAGGGATTGCACCGCCAGCCGGAGTAGAAGCTCGTGGGGGACGAGCC
TGCTCCTCTAAGCCGACACCCCCCCCCCCCAGCGCGTCATTATATAGTAC
CAGCGATGCCTCTGCCGCCCTTGCCGCTGCCGGTGTTGGTAGTGGTGGTG
GTTCTGAGAGGAGAAGCACTTCTCTACTAGCGTCACCAAAACGACGCATC
AGCACCAACAGCAGCACAAACAAAGAGCACAAGAGACTAGACGCACCGGA
GCAGCAACCTCCTGTGATGGCGCAAGCACGAGTGACAGTAGCAACAGTAG
CACCACCAGCACAACTATCAGCGGGAGTATTACATTCACCACCGCTTCCG
GAAGTGCCGACACCATCACATCTTCGCAGTCGACCGTGGAAGAGGGTTAG
GGTCAGGGCGGAGCAAGAAGCAGAATCCAAGCAGCAGCAGCAGCAGCAGC
AGAGACTCCCCGCATCACTCCTACGACCCACCGCCAACGCCACCGCACAT
TTAGAAATATACAGGCCCGACTTGCTCAACAACAAGCGTCGTTGCATAGG
CGCTGGTAACAGTACTGTTGTTATGACAGAGAAAATAATAAAACAAAACG
GAGAAGTGTTATCGGCCAGCCATCGAGTGCCACGAAATACTGGGGGTAGT
AGTGGGTGGTCTGAGTCGGGAAGGCGAGGGGAAAGGGACGCGGAGGGCGA
GAAAGAGGGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3511:9764..10926+

>mRNA_H-paniculata_contig3511.9346.1 ID=mRNA_H-paniculata_contig3511.9346.1|Name=mRNA_H-paniculata_contig3511.9346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig3511:9764..10926+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTTCGCCAAGCATCTTGCCAAGGCTGTAAACATATCGGACCCAGA
GTGGGCGCCCTATTGGATCAACTACAAGCAATTGAAGAAGGTCATCAAAA
AGTCTTGCAGATGTCACGAACCTGAAGGGATTGCACCGCCAGCCGGAGTA
GAAGCTCGTGGGGGACGAGCCTGCTCCTCTAAGCCGACACCCCCCCCCCC
CAGCGCGTCATTATATAGTACCAGCGATGCCTCTGCCGCCCTTGCCGCTG
CCGGTGTTGGTAGTGGTGGTGGTTCTGAGAGGAGAAGCACTTCTCTACTA
GCGTCACCAAAACGACGCATCAGCACCAACAGCAGCACAAACAAAGAGCA
CAAGAGACTAGACGCACCGGAGCAGCAACCTCCTGTGATGGCGCAAGCAC
GAGTGACAGTAGCAACAGTAGCACCACCAGCACAACTATCAGCGGGAGTA
TTACATTCACCACCGCTTCCGGAAGTGCCGACACCATCACATCTTCGCAG
TCGACCGTGGAAGAGGGTTAGGGTCAGGGCGGAGCAAGAAGCAGAATCCA
AGCAGCAGCAGCAGCAGCAGCAGAGACTCCCCGCATCACTCCTACGACCC
ACCGCCAACGCCACCGCACATTTAGAAATATACAGGCCCGACTTGCTCAA
CAACAAGCGTCGTTGCATAGGCGCTGGTAACAGTACTGTTGTTATGACAG
AGAAAATAATAAAACAAAACGGAGAAGTGTTATCGGCCAGCCATCGAGTG
CCACGAAATACTGGGGGTAGTAGTGGGTGGTCTGAGTCGGGAAGGCGAGG
GGAAAGGGACGCGGAGGGCGAGAAAGAGGGAGAGATGAAGTTCGCCAAGC
ATCTTGCCAAGGCTGTAAACATATCGGACCCAGAGTGGGCGCCCTATTGG
ATCAACTACAAGCAATTGAAGAAGGTCATCAAAAAGTCTTGCAGATGTCA
CGAACCTGAAGGGATTGCACCGCCAGCCGGAGTAGAAGCTCGTGGGGGAC
GAGCCTGCTCCTCTAAGCCGACACCCCCCCCCCCCAGCGCGTCATTATAT
AGTACCAGCGATGCCTCTGCCGCCCTTGCCGCTGCCGGTGTTGGTAGTGG
TGGTGGTTCTGAGAGGAGAAGCACTTCTCTACTAGCGTCACCAAAACGAC
GCATCAGCACCAACAGCAGCACAAACAAAGAGCACAAGAGACTAGACGCA
CCGGAGCAGCAACCTCCTGTGATGGCGCAAGCACGAGTGACAGTAGCAAC
AGTAGCACCACCAGCACAACTATCAGCGGGAGTATTACATTCACCACCGC
TTCCGGAAGTGCCGACACCATCACATCTTCGCAGTCGACCGTGGAAGAGG
GTTAGGGTCAGGGCGGAGCAAGAAGCAGAATCCAAGCAGCAGCAGCAGCA
GCAGCAGAGACTCCCCGCATCACTCCTACGACCCACCGCCAACGCCACCG
CACATTTAGAAATATACAGGCCCGACTTGCTCAACAACAAGCGTCGTTGC
ATAGGCGCTGGTAACAGTACTGTTGTTATGACAGAGAAAATAATAAAACA
AAACGGAGAAGTGTTATCGGCCAGCCATCGAGTGCCACGAAATACTGGGG
GTAGTAGTGGGTGGTCTGAGTCGGGAAGGCGAGGGGAAAGGGACGCGGAG
GGCGAGAAAGAGGGAGAG
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