mRNA_H-paniculata_contig35094.9342.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35094.9342.1
Unique NamemRNA_H-paniculata_contig35094.9342.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.010e-26
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGG 285
            REA+GS+MW+S  +RPDI+ A RA +RH   P    W+ +++I  YL  T DLGIT+ERGSG  L  Y DA YA  EDRRSVSG A   GG
Sbjct:   82 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGG 172
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.200e-24
Identity = 50/91 (54.95%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGG 285
            REA+GS+MW+S  TRPDI  A RA +RH   P    W+ +++I  YL  T DLGIT++RGSG  L  Y DA YA  EDRRSVSG A   GG
Sbjct:  163 REAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAEDRRSVSGLATTVGG 253
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.540e-24
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGG 285
            REA+GS+MW+S  +RPDI+ A RA +RH   P    W+ +++I  YL  T DLGIT+ERGSG  L  Y DA YA  EDRRSVSG A   GG
Sbjct:  291 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGG 381
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.710e-24
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGG 285
            REA+GS+MW+S  +RPDI+ A RA +RH   P    W+ +++I  YL  T DLGIT+ERGSG  L  Y DA YA  EDRRSVSG A   GG
Sbjct:  378 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGG 468
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.760e-24
Identity = 50/102 (49.02%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGGAYQHTASQLPS 318
            REA+GS+MW+S  +RPD++ A RA +RH   P    W  + +I  YL  T DLGIT++RGSG  L  Y DA YA  EDRRSVSG A   GG      S+  S
Sbjct:   40 REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQS 141
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.990e-24
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGG 285
            REA+GS+MW+S  +RPDI+ A RA +RH   P    W+ +++I  YL  T DLGIT+ERGSG  L  Y DA YA  EDRRSVSG A   GG
Sbjct: 1357 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGG 1447
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.000e-24
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGG 285
            REA+GS+MW+S  +RPDI+ A RA +RH   P    W+ +++I  YL  T DLGIT+ERGSG  L  Y DA YA  EDRRSVSG A   GG
Sbjct: 1455 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGG 1545
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.280e-24
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGG 285
            REA+GS+MW+S  +RPD++ A RA +RH   P    W  + +I  YL  T DLGIT++RGSG  L  Y DA YA  +DRRSVSG A   GG
Sbjct:  108 REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLTVYVDASYANTDDRRSVSGLATTVGG 198
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5KJ49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ49_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.850e-24
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGG 285
            REA+GS+MW+S  +RPD++ A RA +RH   P    W  + +I  YL  T DLGIT++RGSG  L  Y DA YA  EDRRSVSG A   GG
Sbjct:  110 REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGG 200
[Close]
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.560e-24
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:   13 REAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEYLNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGG 285
            REA+GS+MW+S  +RPD++ A RA +RH   P    W  + +I  YL  T DLGIT++RGSG  L  Y DA YA  EDRRSVSG A   GG
Sbjct:  108 REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGG 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35094.9342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI8_9PHAE4.010e-2654.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE1.200e-2454.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE1.540e-2454.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX6_9PHAE1.710e-2454.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN5_9PHAE1.760e-2449.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L715_9PHAE1.990e-2454.95CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNN1_9PHAE2.000e-2454.95CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBH1_9PHAE2.280e-2451.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJ49_9PHAE2.850e-2452.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE3.560e-2452.75Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35094contigH-paniculata_contig35094:1978..2328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue2e-13
Seed eggNOG ortholog67593.Physo140614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.468724-CDS-H-paniculata_contig35094:1977..23281622930083.468724-CDS-H-paniculata_contig35094:1977..2328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35094 1978..2328 -
1691481139.7747471-CDS-H-paniculata_contig35094:1977..23281691481139.7747471-CDS-H-paniculata_contig35094:1977..2328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35094 1978..2328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35094.9342.1prot_H-paniculata_contig35094.9342.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35094 1978..2328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35094.9342.1

>prot_H-paniculata_contig35094.9342.1 ID=prot_H-paniculata_contig35094.9342.1|Name=mRNA_H-paniculata_contig35094.9342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
QGKYREAVGSLMWLSNNTRPDIAGAFRAASRHNENPMAEDWRRVLRIFEY
LNSTPDLGITHERGSGAELLAYADADYAKFEDRRSVSGGAIFFGGAYQHT
ASQLPSCPCIWLHHQA*
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mRNA from alignment at H-paniculata_contig35094:1978..2328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35094.9342.1 ID=mRNA_H-paniculata_contig35094.9342.1|Name=mRNA_H-paniculata_contig35094.9342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig35094:1978..2328- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCAAGTACCGAGAGGCAGTGGGATCATTGATGTGGCTCTCCAACAA
CACCCGCCCTGACATCGCCGGCGCTTTTAGAGCGGCCTCACGGCACAATG
AGAACCCGATGGCGGAGGACTGGCGGAGAGTGTTGAGGATATTCGAGTAC
CTCAACTCTACGCCCGATCTAGGCATCACTCACGAAAGAGGTTCGGGGGC
AGAGTTGCTGGCGTACGCAGACGCCGACTACGCTAAGTTCGAGGATCGGC
GTTCAGTATCGGGAGGGGCGATTTTTTTCGGTGGAGCATATCAACACACT
GCATCCCAGCTTCCCAGCTGCCCCTGTATTTGGCTGCATCACCAAGCCTA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig35094:1978..2328-

>mRNA_H-paniculata_contig35094.9342.1 ID=mRNA_H-paniculata_contig35094.9342.1|Name=mRNA_H-paniculata_contig35094.9342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig35094:1978..2328- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCAAGTACCGAGAGGCAGTGGGATCATTGATGTGGCTCTCCAACAA
CACCCGCCCTGACATCGCCGGCGCTTTTAGAGCGGCCTCACGGCACAATG
AGAACCCGATGGCGGAGGACTGGCGGAGAGTGTTGAGGATATTCGAGTAC
CTCAACTCTACGCCCGATCTAGGCATCACTCACGAAAGAGGTTCGGGGGC
AGAGTTGCTGGCGTACGCAGACGCCGACTACGCTAAGTTCGAGGATCGGC
GTTCAGTATCGGGAGGGGCGATTTTTTTCGGTGGAGCATATCAACACACT
GCATCCCAGCTTCCCAGCTGCCCCTGTATTTGGCTGCATCACCAAGCCTA
GCAGGGCAAGTACCGAGAGGCAGTGGGATCATTGATGTGGCTCTCCAACA
ACACCCGCCCTGACATCGCCGGCGCTTTTAGAGCGGCCTCACGGCACAAT
GAGAACCCGATGGCGGAGGACTGGCGGAGAGTGTTGAGGATATTCGAGTA
CCTCAACTCTACGCCCGATCTAGGCATCACTCACGAAAGAGGTTCGGGGG
CAGAGTTGCTGGCGTACGCAGACGCCGACTACGCTAAGTTCGAGGATCGG
CGTTCAGTATCGGGAGGGGCGATTTTTTTCGGTGGAGCATATCAACACAC
TGCATCCCAGCTTCCCAGCTGCCCCTGTATTTGGCTGCATCACCAAGCCT
AG
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