mRNA_H-paniculata_contig35077.9338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35077.9338.1
Unique NamemRNA_H-paniculata_contig35077.9338.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35077.9338.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 8.540e-6
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 RRRILMRQLDGMTMKQDQDPDMFLAHVYQLRDELAHKGEEISDERLTDIILEGLTDDY 174
            RRR L R+L+  TM+   DPD+F+ HV+ L ++L   G  ++DE+L DIIL+GL  +Y
Sbjct:  250 RRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35077.9338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE8.540e-646.55Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35077contigH-paniculata_contig35077:1777..2223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.9972088-UTR-H-paniculata_contig35077:1776..17911622930082.9972088-UTR-H-paniculata_contig35077:1776..1791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35077 1777..1791 +
1691481139.5334756-UTR-H-paniculata_contig35077:1776..17911691481139.5334756-UTR-H-paniculata_contig35077:1776..1791Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35077 1777..1791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.01339-CDS-H-paniculata_contig35077:1791..22231622930083.01339-CDS-H-paniculata_contig35077:1791..2223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35077 1792..2223 +
1691481139.5426545-CDS-H-paniculata_contig35077:1791..22231691481139.5426545-CDS-H-paniculata_contig35077:1791..2223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35077 1792..2223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35077.9338.1prot_H-paniculata_contig35077.9338.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35077 1792..2223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35077.9338.1

>prot_H-paniculata_contig35077.9338.1 ID=prot_H-paniculata_contig35077.9338.1|Name=mRNA_H-paniculata_contig35077.9338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MRQLDGMTMKQDQDPDMFLAHVYQLRDELAHKGEEISDERLTDIILEGLT
DDYDQIKYNAESDPDFSIDEIEVTMRSMYTNRTARRGSSRKSRGRGSAMV
ATTLASKSSKFNGKCHSCGKIGHAMRDCSSKKSINNGKKGSKWC
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mRNA from alignment at H-paniculata_contig35077:1777..2223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35077.9338.1 ID=mRNA_H-paniculata_contig35077.9338.1|Name=mRNA_H-paniculata_contig35077.9338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig35077:1777..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACGCCGTATTTTAATGCGGCAGCTAGATGGCATGACCATGAAGCAGGA
TCAGGACCCCGACATGTTTTTGGCCCATGTTTATCAGCTTAGGGACGAAC
TAGCTCACAAGGGGGAGGAAATTTCTGATGAGCGTTTGACTGATATAATT
CTGGAAGGTCTAACCGATGACTATGATCAGATCAAATATAACGCTGAGAG
TGACCCCGATTTTAGCATCGATGAAATTGAGGTGACTATGCGCAGCATGT
ACACAAATCGTACAGCGCGTAGGGGTTCATCACGTAAATCTAGAGGACGT
GGATCAGCCATGGTGGCAACAACATTGGCCTCAAAATCTTCAAAATTCAA
CGGTAAATGCCATTCCTGTGGTAAAATCGGGCATGCTATGCGAGATTGTA
GTTCCAAGAAAAGTATCAATAATGGTAAAAAGGGCAGCAAGTGGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig35077:1777..2223+

>mRNA_H-paniculata_contig35077.9338.1 ID=mRNA_H-paniculata_contig35077.9338.1|Name=mRNA_H-paniculata_contig35077.9338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig35077:1777..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCAGCTAGATGGCATGACCATGAAGCAGGATCAGGACCCCGACAT
GTTTTTGGCCCATGTTTATCAGCTTAGGGACGAACTAGCTCACAAGGGGG
AGGAAATTTCTGATGAGCGTTTGACTGATATAATTCTGGAAGGTCTAACC
GATGACTATGATCAGATCAAATATAACGCTGAGAGTGACCCCGATTTTAG
CATCGATGAAATTGAGGTGACTATGCGCAGCATGTACACAAATCGTACAG
CGCGTAGGGGTTCATCACGTAAATCTAGAGGACGTGGATCAGCCATGGTG
GCAACAACATTGGCCTCAAAATCTTCAAAATTCAACGGTAAATGCCATTC
CTGTGGTAAAATCGGGCATGCTATGCGAGATTGTAGTTCCAAGAAAAGTA
TCAATAATGGTAAAAAGGGCAGCAAGTGGTGTATGCGGCAGCTAGATGGC
ATGACCATGAAGCAGGATCAGGACCCCGACATGTTTTTGGCCCATGTTTA
TCAGCTTAGGGACGAACTAGCTCACAAGGGGGAGGAAATTTCTGATGAGC
GTTTGACTGATATAATTCTGGAAGGTCTAACCGATGACTATGATCAGATC
AAATATAACGCTGAGAGTGACCCCGATTTTAGCATCGATGAAATTGAGGT
GACTATGCGCAGCATGTACACAAATCGTACAGCGCGTAGGGGTTCATCAC
GTAAATCTAGAGGACGTGGATCAGCCATGGTGGCAACAACATTGGCCTCA
AAATCTTCAAAATTCAACGGTAAATGCCATTCCTGTGGTAAAATCGGGCA
TGCTATGCGAGATTGTAGTTCCAAGAAAAGTATCAATAATGGTAAAAAGG
GCAGCAAGTGGTGT
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