mRNA_H-paniculata_contig3505.9333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3505.9333.1
Unique NamemRNA_H-paniculata_contig3505.9333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3505.9333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3505contigH-paniculata_contig3505:13866..16413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.3754861-CDS-H-paniculata_contig3505:13865..139761622930082.3754861-CDS-H-paniculata_contig3505:13865..13976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 13866..13976 +
1691481139.2683892-CDS-H-paniculata_contig3505:13865..139761691481139.2683892-CDS-H-paniculata_contig3505:13865..13976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 13866..13976 +
1622930082.391735-CDS-H-paniculata_contig3505:16185..164131622930082.391735-CDS-H-paniculata_contig3505:16185..16413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 16186..16413 +
1691481139.2813053-CDS-H-paniculata_contig3505:16185..164131691481139.2813053-CDS-H-paniculata_contig3505:16185..16413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 16186..16413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3505.9333.1prot_H-paniculata_contig3505.9333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3505 13866..16413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3505.9333.1

>prot_H-paniculata_contig3505.9333.1 ID=prot_H-paniculata_contig3505.9333.1|Name=mRNA_H-paniculata_contig3505.9333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
LSSGTGDGAKRGEDKNRHKAKESVIFSPALRPEHHEEHDQVSSTAATNRV
SDDEAPAATVTPKTTAPIRDSGNGEEEGGENVAAVEEVEGGDGEAGEGDV
VGVEEGEEVGEEE
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mRNA from alignment at H-paniculata_contig3505:13866..16413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3505.9333.1 ID=mRNA_H-paniculata_contig3505.9333.1|Name=mRNA_H-paniculata_contig3505.9333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2548bp|location=Sequence derived from alignment at H-paniculata_contig3505:13866..16413+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCGTCCGGGACGGGGGACGGGGCGAAACGGGGGGAGGATAAGAATAG
GCACAAGGCGAAGGAGAGTGTTATATTTTCGCCTGCATTGCGCCCGGAGC
ACCATGAGGAGGTACGATGTGTGTTTGTGTGTTGGGATTGTGTTTTGGTT
ATGTTTTGTATCATTTTTTTTTTTTCTTGTATTATGTAGATGTAGATGTA
GACAGATGGATTTGTGAGTAAGACACATGGAATGAAGTCACTCTTTTTTC
CCGTCACATGTGATTATTGCTTCAGTCGAAACCCGTGAGTCATGAAGTTG
GGGTCGTGCTCGTTGGGGTCGTGTTCGTGGGTGATTATTGTCCATTCTAA
TTCCAAGAGCTCGGTTTTTCCAGCGTCGCGGTAGATTTCCTTTCTCTTGC
CCCTCCCTTGATATAGAGATGCTTACGATAACACGGGGTGGTGTTAGGTG
TTTAGGTGCTTATCCTTCTATAGTTGCCAACTCGATCCGGTTTCTCCTCA
ATGCATTAGCCTAATTGCCCAGACCTGCGGTCACAGGATGGAACTTCCCA
CCGGATATATGTCGAAAGCGTATATGATGTAGACACCCATTTTGTCCCGA
GGGATACAGTCTGTGTGGTACCTGCAAGACAGCGTCCGTACTTGTGTAAG
TGAAATTCACATGAAGAAAGCCTTCGAGAAGGAAACGCGATTCAATGGCA
TTGACGGTGGGTGTATCATCGGCGCCATCGATTTATATACTTGAACGTCA
ACCCTTTTAGAGCTGGAAACTGTTGCTTAACAAAGAAGGTATCGCACAAC
CAAATACAGAAAACCGTAGTTGTCGTACTCCATGGTATATCACGTTGAAT
AACCCCCCCCCCCGCGCGCGCGCTTTATGACATTTTCCGACCTCGATTTC
CTGAGACAGAACAGTCCTCATGGCACCGAAAGTTAGTGTCATTTTAGTGA
TATCTCTCGGCTATCTCTATATATCGTTACTAGATAGAGGTCCTTGTTCT
TCAGTCTAAGTTTGTTCAAGTTGGAGAAGATCTGCCTTGTGATTGCTGTA
TAGCTGCGGAGTACACTTGTTGTCAAGTTTGTCGCGTATTGTATTTTGGT
TTAGACTGTAGGAAGTTCTTTCCTGAGAACTTGGGTCCGAGCAGCTGTTT
TAGACTCCAGTTTTGAAGCAAAGAAAAGGTCATCTCCAGGAAATCGAGGT
TGAGCATGGGGGGAATTAATGTACCTTGTAACTAAAGCTTGACTCTGGCT
CTGTCCGGGTATGTGCCGTCCACTGATGTACCTGCTGTAGGGGATCAGGT
CTCCCAATTCTCCCCAGATTGGCGGCAGGTTATTTTTTGTGCCAGGTATC
AGTTGTGATGCACGGTTCGGCTTGGTTTGCAGTCCCCGGCGCTAGTTGTT
TTGACGTTATGCTAGATAACGGATTATTGCACGAAATATATCAAAGAAAG
TGCAACAACACCATTCCGTCAAGGTCTGATGAAAACACGTCTTTTGTTTC
GTACTGTACTAATAATGTCGTTTCAGAAGAGATTTTCAACTCCCTACCCA
AGTAATTTTTCCCAAATACGAATCTTCATGCGAGCGCAATGAGTCTGTGG
GTCGAGGATAAGCACCAACTGCAAGGTTAGCCATGGTTATCACCGTAGTA
AAAATTATTACTGTCAATTAAATTTACATTTAGGCGGATGGGAAATGAAC
TTACGCTTCTCTGGCGATGCATGATCCGTCACGGGACTATGCACTGATCA
TACGGTGTAAAATCAGTATATGAACGAATAGATCATCGTAATCATGGATG
ATGATCAAACACCCACTGTTCACACATGCGGGAAAAAGTAGTAGTTAAAA
AATACAAGTCGTGCCAAATTGTTCCAATTTTTTTTTTGACCAAAACCCAA
TGTGATTAATCGCTTTTTGGATGAAATAGTTGTTGACCGGTAAACGGGGA
CAACATCAACCATATTACACCCATAATCAACCATTTGATTGCAATGTGTG
CGAGTTTTTTACTGCTACACTGATGAAAAAAGCTTGCCACCGTGTCGGGG
GGCGCTATTACAAAAAAAAAAAAAAACGTTGTCTACATGTCATTCAATTG
CTGGTGAGTTGAAGACCCGAATATTATGCGGTTGCGTGTTTGTTCTCAAA
CCCTTTTTGCGCGACTTGGTCATTATCCTTTGGTCCTTATCCATGGTTGA
GATTTCTAAAGCTTTGTGCGTCAAGTATCAAGAATTGCCCATCCGATGGT
ATAACACACTAAAGTATGCAGTACTTTCGTTGTGCGGGGTGCATTTGTGG
TGTGGTGTTTTGCTGTGCAGCATGATCAGGTTTCTTCTACAGCCGCCACA
AACCGTGTCAGTGATGACGAAGCACCAGCAGCAACAGTAACGCCGAAGAC
GACAGCCCCAATACGCGATAGCGGGAACGGAGAGGAAGAGGGGGGAGAGA
ATGTGGCGGCAGTTGAGGAAGTTGAGGGCGGTGATGGTGAGGCAGGAGAG
GGCGATGTCGTTGGCGTTGAAGAAGGAGAAGAAGTGGGTGAGGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3505:13866..16413+

>mRNA_H-paniculata_contig3505.9333.1 ID=mRNA_H-paniculata_contig3505.9333.1|Name=mRNA_H-paniculata_contig3505.9333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig3505:13866..16413+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCGTCCGGGACGGGGGACGGGGCGAAACGGGGGGAGGATAAGAATAG
GCACAAGGCGAAGGAGAGTGTTATATTTTCGCCTGCATTGCGCCCGGAGC
ACCATGAGGAGCTCTCGTCCGGGACGGGGGACGGGGCGAAACGGGGGGAG
GATAAGAATAGGCACAAGGCGAAGGAGAGTGTTATATTTTCGCCTGCATT
GCGCCCGGAGCACCATGAGGAGCATGATCAGGTTTCTTCTACAGCCGCCA
CAAACCGTGTCAGTGATGACGAAGCACCAGCAGCAACAGTAACGCCGAAG
ACGACAGCCCCAATACGCGATAGCGGGAACGGAGAGGAAGAGGGGGGAGA
GAATGTGGCGGCAGTTGAGGAAGTTGAGGGCGGTGATGGTGAGGCAGGAG
AGGGCGATGTCGTTGGCGTTGAAGAAGGAGAAGAAGTGGGTGAGGAGGAG
CATGATCAGGTTTCTTCTACAGCCGCCACAAACCGTGTCAGTGATGACGA
AGCACCAGCAGCAACAGTAACGCCGAAGACGACAGCCCCAATACGCGATA
GCGGGAACGGAGAGGAAGAGGGGGGAGAGAATGTGGCGGCAGTTGAGGAA
GTTGAGGGCGGTGATGGTGAGGCAGGAGAGGGCGATGTCGTTGGCGTTGA
AGAAGGAGAAGAAGTGGGTGAGGAGGAG
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