mRNA_H-paniculata_contig3505.9332.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3505.9332.1
Unique NamemRNA_H-paniculata_contig3505.9332.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3505.9332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3505contigH-paniculata_contig3505:8136..13814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size760
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3505.9332.1prot_H-paniculata_contig3505.9332.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3505 8274..13814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.2569697-UTR-H-paniculata_contig3505:8135..82731622930082.2569697-UTR-H-paniculata_contig3505:8135..8273Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3505 8136..8273 +
1691481139.2043228-UTR-H-paniculata_contig3505:8135..82731691481139.2043228-UTR-H-paniculata_contig3505:8135..8273Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3505 8136..8273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.2717898-CDS-H-paniculata_contig3505:8273..82951622930082.2717898-CDS-H-paniculata_contig3505:8273..8295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 8274..8295 +
1691481139.2159524-CDS-H-paniculata_contig3505:8273..82951691481139.2159524-CDS-H-paniculata_contig3505:8273..8295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 8274..8295 +
1622930082.2890792-CDS-H-paniculata_contig3505:12032..120981622930082.2890792-CDS-H-paniculata_contig3505:12032..12098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 12033..12098 +
1691481139.22508-CDS-H-paniculata_contig3505:12032..120981691481139.22508-CDS-H-paniculata_contig3505:12032..12098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 12033..12098 +
1622930082.3027673-CDS-H-paniculata_contig3505:12672..129041622930082.3027673-CDS-H-paniculata_contig3505:12672..12904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 12673..12904 +
1691481139.2336533-CDS-H-paniculata_contig3505:12672..129041691481139.2336533-CDS-H-paniculata_contig3505:12672..12904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 12673..12904 +
1622930082.3233926-CDS-H-paniculata_contig3505:13513..138141622930082.3233926-CDS-H-paniculata_contig3505:13513..13814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 13514..13814 +
1691481139.2460694-CDS-H-paniculata_contig3505:13513..138141691481139.2460694-CDS-H-paniculata_contig3505:13513..13814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3505 13514..13814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3505.9332.1

>prot_H-paniculata_contig3505.9332.1 ID=prot_H-paniculata_contig3505.9332.1|Name=mRNA_H-paniculata_contig3505.9332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MPSTPYAGSTADTPIASAKRPKRRAQPLSSTARNGSLYVDSKSNKSNSSN
SSNGNNDNNGSEVRGAATSVVGDGDGDGDGDDTTMRRESEDLGLDAQSSP
KARKSSQSSTPRKSGVEAGGFGAATTTTKAQAGENSPADSNAPQKRSAPE
CGTGMEGQQCGSPDSDSSVATPRHGSAGTAAGHNAGPGAGPDSSTKGTPS
STRGAGG
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mRNA from alignment at H-paniculata_contig3505:8136..13814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3505.9332.1 ID=mRNA_H-paniculata_contig3505.9332.1|Name=mRNA_H-paniculata_contig3505.9332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5679bp|location=Sequence derived from alignment at H-paniculata_contig3505:8136..13814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATAAAAAGAGCGGGAGCATAAGAGGTCGAAGAGCAAGTGACAGGGCT
GGAGGAGCGTGATCGCTTACGGAATAGGAGACATAGCCCATAGCTTTGAG
GCAGACAACTGTGGTAGTATCGATCTCCAACGAAGGAAATGCCTTCCACT
CCGTATGCAGGTGGGTTTTGTTCTTCGTAAGTGTGCGCCCTGCGGTTGTG
TTGATGAAATACGTACATCTAGCTGAATGAACAACCCTAAAACGTACGAG
CAGCCATGTGTTCACTTAATTGTTCACACAATGAGTGTGACTTACGGACA
TCCTTTAAGAAAAATAGCTTCCAAAAAGTTTGACATGGACAAGATGCTTT
GCCGTTTGCCTAGGAAGGTCATCATCATGACCAACTGCATGTGTTGCCAT
ACATGACGACACTTCAGTAGCCCATTTACCCCGCGTCGAAGACACCGTGG
TGGAAGGGTCAGCATCGTTTTTTTCCATGATGTGAGCCGTTGTATTTTGT
GTCCTCAACATCGCACATGCATTTCGATGCGAGTATTTTGCCAGATATAA
ATACTGTACATTTTTGGGCGAGGTCCCAAGGCCTCTATGTTGTTTTGCTT
GAAGAGCGTCTTGCGCTTGGCGAAAAAATCCCGCGGTGCATACATGAACG
CCATGGCAGGTCAAGCCGGTGAGACTTGAGTCACGTTCCCAGATATGTGA
AATATACACTGTTGTCCTACATATGTGAAGAGGGGATTTATTTATTCCAT
GTCCAGATGTTGGTTTCGTGCATTTTGTACCCCTGCGCCCGACACGGTAC
ATTGGCGCCTACACTGACTGCTGCCCGGCATCTTCGATATTCGCACCAAA
GACCGCCCCCGGCCTCCCCTCCCCTCCCACCAATGCAGATCTCACACATT
TGTTTGACTGTTGATAGCGTTGCGATTTTTACAGTCTAGCCGTAGACGAA
CATGTGGGTGTCTGGATGGTCGAGTTGGTGGCGAGAGGCAGTCTCCGCAT
TCAATCAAAACATCACTCAACGTGTGTGTCCGTCCCTGTAACACACCAAC
AGCGAGTGTCTACCCGCTTCAATGAAGGAGCAACAGTGAACACACACAGA
AATACAAATGTCAAATTGCATGAAGAGCTTATTGCCTGTGTGCACGTGTG
AACAGCTCGAGTATGTTTGTATCCCCAACTCTCCGCCTCAATCGTACGCA
CAGCGATATCGGTGACTTCTTTGAAACCTCGTTATTTTTCACTGACAACG
GTATTTCCGTTATGATGTCTAGTGTGTGCAAAGTCCATCGATCTCATCAC
ATCAGAGGAATTTTCTTGTGCCACCGCCCACAAGTCCTGCTCTCATGTCG
GTTTCGCATTTGATCTGTCATGGACAAGAACGAAATACCTGACATGCTTG
CAATTCCATCACTCACTCCAGCTCTCCATTGCTTCCCGCTCTTTTCAGCG
TTGGCTTGTATCATTCGCTGGCTGGAAGACGTGGTGCTATTATTCGCAGC
CTTCACCAGGGTATCTGTTTACACTCAATAGTTGTGGTTATTGATGATGT
TTTTGACCGTTGGTGTCGATGGCTGTACTGCACTGTAATTACGCTAGTAC
TTTGGCGCGCGCATGAACGCTGCGGCAATTTTGTGTCGAGGCTATTGAGG
TTGGTAGTCTTCAATAATCAGGTGTAACTTGCCCCTGCCAACATGCGCCC
CCTACCATAGAACACGACACTACGACAATGAAGAGCACCCCGCCCAAGAG
ATCTTCCAATCTGTCGTCGTATTGTTGCGAATGGCGTGGAAGGGGGGATT
CGCCTGCCTAAACGGCTTCTCCGAACCTTCTGCTAATATAATGCCCCTGG
AAAGCAAGCACGACCGTTAACTAATTTGAAATAGTTGACAACATTATACA
TACGTACACACCTAGTCAACAGAGCCAGTTCAGATCGTCATCCGCAATGT
ACGCCAATATACTGTCTGTAATTTGTTGCTGCACTAAAGAAGATGGGAGG
CGACAGCAATTCATTTTCACAGAATAGAAAATTCTAACCCTGCACCACCG
ACGGCTGTACATCGTAACATGAGAAGTTGCTATTTCGCTGCGAGTTTGGT
ATTACGAACCATGAGCGTGTCCCGGAGACACTGACAGTCCAATCTTCAAA
TCTGTAAGTTTACTGTCGGTAAGGGTTGCCGAGTGCTTGAACATCACGTC
ATGGCCGTCCCGAGTACCACCTACGGTTAGGACTGATTGTCGTCACCTGT
GGCTCAGGATGAACGGTGTTTTCCTGTCGTGGGGGTCCCTTCCTCTGTAC
ATGAGCGTTCGTGCATCTGTACTGTCATAAATGTCCCCATGCCTTCCCAA
GCGCCAAGCGGGTCCCACTGTGGTACGGTACAGGAAATAAGTTTTCTAGC
GACCCGACTCAGTTGGCAGATATGATACCATGGAAGTAATAGTTGTCGTC
CAATATCCCGTAGACGTTGCATGTTGGCAGAGATCAAACGATCGATGAAC
CGATTAGGTCCTAAATCAAATAAACTAGATGATCGAACACGAGCGAGTCG
AGAAATCAAACCAAGCGGATCAGCTCTCCCTTCCGTCTGTAAAGGCAGGT
TCGACCGATTACCATAATCATATTTGGACAACACGGGTATGGTCCGGTCC
GCCTGGGCGGAATGGGGGGGTTGCGTCACAGGCAGAATATTCTCCGTGCA
TCTAGTTTTCCTATCGCTCCCTAAAAGTGTCTCGAGCCCTGCCTCCCCGA
TGATGTGAATGCCGCATGTGTACATACATATACATGAAGTAGCACAGTGT
GTAGATAAACTGCTTGTTGCCAAATGCCACTCTGAAAAACCACGAGAACG
ACGAGAAGAGCGCGGCGTTCCATCTTGTGAACCGGGAGGACAACAGTGAC
ATCATGGCCGGCGCCCTGAAATACATCCTGTAAGGGGCGTTCCACTGGTA
CGCCGCATTCAGGAAACCCCGAAACACCGACTTACGAACATGGTATTCGG
TTGGCCCGCACATGAACGAACACCCACCCGCCCTGCTAGCGTAGTTTCGG
TCGGATTCCGGCTCTGCCAATGCGGTTAGGTCAGACTTACGCTTGGCCAA
CGCACCCCAAGGATCGAAGAGTTCGGGTTTAGAAATGGATTCAGCCCTAG
AGTTACTTACATGGTGGGGAGCTGGCAGCGCAGTTGGATAAGAGATGTAA
GCCCTGCCAATGAATACGCACATATTTCCCCGCCAACGTAGGTTGATAAA
ATTCACCACCTGAACCACTTGGATATAGCACTCTGGATCACTTGAAAACT
TGACCAGTGCATGATGTGCTGGGTAAGCGGGTGTATTTGTTTCTCTCGAT
ATGGTGTAAGAATAGAACCCGCCACTCACGGCGTATCTCATGGTGCCGCA
CCATAGTAAGCAGCTACTCCTCGATCAATCGAAATTCCGATCATGTGATA
TGACACTGTATTTTTTTCGAACTTGTTTTTGTCGACGGCAAAGCTGACCT
GTGTTCGTAAAGCACGTCGATCGATAGGTCTCGATTAGATCTTTCCAATG
ACACAACGTTCGGAGTCAGTATTTAGCACCGTCATCTAGAGACTCGGATT
AGAGAAAGATGGTCTTACCGGGGATAGTTCTCCAAAACTAATACGGTATC
CATGTGTAGGTGATATCATAAATACACGCCTTCGCTGGAAGGAAAATGTA
CAGAATTCCTACTTGGTAATGGTGAAAAGTGTTCTATTTGAGTTTTCAAA
ACCTTTTGCATTGTATGGTGTACCTGGTGGATTACAGCAAAAGCAATGTC
TTACGGTTTTTCTTGTGCTCTTCCTTTTTCTCCTTTGTGTTTGCTTCTTT
TTTTTCTCCCTTTTTCCTCTCGTTCGACGCCTTTTTTCTGTTTATAGGGT
CCACTGCAGACACGCCCATTGCCTCAGCGAAGCGACCTAAAAGGCGGGCA
CAGCCTCTCTCATGTGAGTTACGGTATGGTGTGGGGTATCGTTTGGTGTC
GCGGCAGGTGGTAAAGTTTTTCGTTGGCGATCACGTGAGAGAGGGAGGGG
CGAGGGGTTACATTGCTGTGGTTTAATGGCGCGTGTTGTCATGACTGCGG
TCTCCAGGGGCAGTTTCTCTCCAAGATTAGACGCCCCCAGAGTGTGCGTC
GTGTTCCGTTGTCTATGATCGTCTTGGTTGTGTGCGTCGTCTATTTGAGA
ATATTTTGCTCCACTTTACAGCATGAGTAACGGTAGTACTGCCAGTGTTC
GCGTGGTACCAATAATGGTGTCACTTGCGTGCGTAGCTTGTTTCACTTGA
ACGTTTGTTCTGTTATACTGTTGGAATAGCGACAACCCTGCCGTAGTAGA
CAGATTCAGGCAAAAAGCCCCCAAATGCGGTAAGTTCGAGAGTCATGGCC
CGTGTGTTGCAGATATCCCCATTCACTTGTCTCTACCTCCCATCCCTATG
AGTACATCACTTTGTTTTACCTTTCCATGCGTCCCTCGTTGTTTTTCGTG
TGCCCTCACATTCTATATACACACCAAATACATACAGCTACCGCACGAAA
TGGTAGTTTGTACGTCGACAGTAAGAGCAACAAGAGTAACAGCAGCAACA
GCAGTAACGGCAACAACGACAACAATGGGTCCGAGGTTCGGGGGGCAGCT
ACGAGCGTGGTGGGCGATGGTGATGGGGACGGGGACGGTGATGATACCAC
GATGAGGAGGGAGAGCGAGGATTTGGGCCTCGATGCGCAGAGCTCCCCGA
AAGCGCGCAAGAGCAGCCAGTGAGTTCGTTCAACAATGCCGGTTAGGGCC
ATTAAGAGTTTTTGCGCAAAACGAAGTCCTTTTGCAAAGTTCGATTTGGT
CGTATATCGCTAGTAATAGCGAGGTACTCACCGCAGACTTTCTCCGAACC
CAGATCACCCACACTCACGTCTCGTTACGAAAGGAAACCCCTTTGAAAAT
TCGTTGATTTATTCCGTAAGATACGCGAATAGTCGAAGATTAGGATATTG
TTTTGAAACGAGACATCGGTGGGGGTGGACTGGGGGTGGAGACAAGGAGC
TCACTGCTAGCTATGCACGACCAAATCAGAATTTACCAAAGTCCTCCTCC
CACCGGGCCTTCACTACCACTGGTACTGCACTGTCCTGTGACGGCTTGTG
CTTGGAGTACCCATCCCTGTATCCTCGCACCCTAAAATACTCGTCAACAA
AATGAAACCTTAATCTCCCCTTCTTTATTGATGTAATTTTACTGGCAAGT
ATATATATCTGAAGTTTGAGGTCAGCTGTGTAACCTCAGCTTGGGTACAA
TGGAGTTATTATATTGGCGTCAGAGCTGATTTTACACCCCCCCCTCCCCG
AAAAATCCCGCCATCACCAAACAAACAGGTCATCCACTCCCAGAAAGAGT
GGGGTAGAGGCGGGAGGGTTCGGCGCAGCAACGACGACGACAAAGGCACA
GGCGGGGGAAAATAGCCCCGCTGATTCCAACGCTCCCCAGAAACGAAGTG
CCCCGGAGTGCGGGACAGGCATGGAAGGGCAGCAATGTGGTAGTCCTGAC
TCTGACTCTTCCGTTGCTACTCCGCGACATGGGTCGGCAGGGACGGCGGC
GGGACATAACGCGGGGCCGGGTGCAGGCCCTGACTCCAGTACTAAGGGTA
CCCCTTCGAGCACGAGGGGGGCGGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3505:8136..13814+

>mRNA_H-paniculata_contig3505.9332.1 ID=mRNA_H-paniculata_contig3505.9332.1|Name=mRNA_H-paniculata_contig3505.9332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig3505:8136..13814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCCACTCCGTATGCAGATGCCTTCCACTCCGTATGCAGGGTCCA
CTGCAGACACGCCCATTGCCTCAGCGAAGCGACCTAAAAGGCGGGCACAG
CCTCTCTCATGGTCCACTGCAGACACGCCCATTGCCTCAGCGAAGCGACC
TAAAAGGCGGGCACAGCCTCTCTCATCTACCGCACGAAATGGTAGTTTGT
ACGTCGACAGTAAGAGCAACAAGAGTAACAGCAGCAACAGCAGTAACGGC
AACAACGACAACAATGGGTCCGAGGTTCGGGGGGCAGCTACGAGCGTGGT
GGGCGATGGTGATGGGGACGGGGACGGTGATGATACCACGATGAGGAGGG
AGAGCGAGGATTTGGGCCTCGATGCGCAGAGCTCCCCGAAAGCGCGCAAG
AGCAGCCACTACCGCACGAAATGGTAGTTTGTACGTCGACAGTAAGAGCA
ACAAGAGTAACAGCAGCAACAGCAGTAACGGCAACAACGACAACAATGGG
TCCGAGGTTCGGGGGGCAGCTACGAGCGTGGTGGGCGATGGTGATGGGGA
CGGGGACGGTGATGATACCACGATGAGGAGGGAGAGCGAGGATTTGGGCC
TCGATGCGCAGAGCTCCCCGAAAGCGCGCAAGAGCAGCCAGTCATCCACT
CCCAGAAAGAGTGGGGTAGAGGCGGGAGGGTTCGGCGCAGCAACGACGAC
GACAAAGGCACAGGCGGGGGAAAATAGCCCCGCTGATTCCAACGCTCCCC
AGAAACGAAGTGCCCCGGAGTGCGGGACAGGCATGGAAGGGCAGCAATGT
GGTAGTCCTGACTCTGACTCTTCCGTTGCTACTCCGCGACATGGGTCGGC
AGGGACGGCGGCGGGACATAACGCGGGGCCGGGTGCAGGCCCTGACTCCA
GTACTAAGGGTACCCCTTCGAGCACGAGGGGGGCGGGGGGGGTCATCCAC
TCCCAGAAAGAGTGGGGTAGAGGCGGGAGGGTTCGGCGCAGCAACGACGA
CGACAAAGGCACAGGCGGGGGAAAATAGCCCCGCTGATTCCAACGCTCCC
CAGAAACGAAGTGCCCCGGAGTGCGGGACAGGCATGGAAGGGCAGCAATG
TGGTAGTCCTGACTCTGACTCTTCCGTTGCTACTCCGCGACATGGGTCGG
CAGGGACGGCGGCGGGACATAACGCGGGGCCGGGTGCAGGCCCTGACTCC
AGTACTAAGGGTACCCCTTCGAGCACGAGGGGGGCGGGGGGG
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