mRNA_H-paniculata_contig35044.9330.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35044.9330.1
Unique NamemRNA_H-paniculata_contig35044.9330.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 8.670e-50
Identity = 87/110 (79.09%), Postives = 99/110 (90.00%), Query Frame = 1
Query:   19 YPGPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLIIGDRALFDD 348
            + GP+VG+ LGM GSF LGYIIDD +TEIT+TVIVCFS+F+ISEAT L VSGVLA VT GLVMSFYA GRISPGVE +MHTFWSMATYVANTVIFF+SGLIIGD+A+F+D
Sbjct:  147 FGGPMVGLALGMFGSFLLGYIIDDAMTEITVTVIVCFSSFIISEATTLHVSGVLAAVTAGLVMSFYAGGRISPGVEHSMHTFWSMATYVANTVIFFVSGLIIGDQAIFND 256          
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.420e-33
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   25 GPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLIIGDRALFDD 348
            GP VG   GM+GSF++GYI++D L+EIT TV+VCFSAF+++EAT L VSG+L+VV  GL MSFY R RISP V+E++  FWS+  Y+ANTVIFF++G     RA   D
Sbjct:  253 GPAVGFFTGMIGSFAIGYILEDHLSEITCTVVVCFSAFLLAEATILRVSGILSVVIAGLYMSFYGRPRISPSVQESLREFWSLWGYMANTVIFFLTGFTAATRAFGSD 360          
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: A0A7S1UK40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK40_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.270e-28
Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   25 GPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLIIGDRALFDDHIEVS 363
            G V G+ +G     ++ YI+ DG++EIT+T+I  F AF+++EAT L VSGV+AVV  G +MS   + R SPGVE T+H FW +A Y ANTVIFF+SGLI+ +++ +   I+ S
Sbjct:  231 GAVAGIAVGAACVIAISYILHDGMSEITITIIGAFGAFLVAEATGLHVSGVIAVVMVGFLMSHVGKARFSPGVEHTLHGFWEIAGYGANTVIFFVSGLIMSEKSFYTPEIQAS 343          
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: A0A5A8DG13_CAFRO (Cyclic nucleotide-binding domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DG13_CAFRO)

HSP 1 Score: 117 bits (294), Expect = 3.310e-28
Identity = 53/112 (47.32%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   25 GPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLIIGDRALFDDHIEV 360
            GP++G +   +   +L Y+ +D ++EIT+TV+ C+S FMI+EAT L  SGVLAVVT G++MS + +  +SP VE  MH FW M +Y +NTVIF +SG+II  + L+ +HI++
Sbjct:  228 GPLLGAIFAAISIVALSYLYNDAVSEITVTVVGCYSVFMIAEATMLHTSGVLAVVTLGVLMSGFGKVHVSPEVEHAMHGFWEMLSYFSNTVIFLLSGVIIAHKTLYSEHIDL 339          
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: A0A4D9CXX3_9STRA (Na_H_Exchanger domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXX3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.740e-25
Identity = 51/110 (46.36%), Postives = 80/110 (72.73%), Query Frame = 1
Query:   25 GPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLIIGDRALFDDHI 354
            GP+VG+ +G L S+ LG+I++D L+EIT TV+V + +F+++E+T L  SGVLA+V  GL MSFY RGR+S  V   +++FW++A ++ NT+IF ++GL +  R L   +I
Sbjct:  216 GPIVGLCVGALASYILGFILNDPLSEITTTVVVGYGSFILAESTGLHASGVLAMVVAGLYMSFYGRGRVSARVRAELNSFWAIAGFITNTLIFVVAGLQMAMRGLRSTYI 325          
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 8.380e-25
Identity = 49/108 (45.37%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   25 GPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLIIGDRALFDD 348
            GP +G V+G++G+F LGY+I+D L E++LTV++ FS F + EAT+++VSGVL +V  G+V+S+Y + R+S  V  ++  FW    + A+T IFF+SGLI+   A+ +D
Sbjct:  236 GPAIGAVIGIMGAFVLGYVINDALVEVSLTVLLAFSTFALCEATRVKVSGVLGIVACGVVLSYYGKPRVSSPVLPSLMDFWKTLQFFADTTIFFLSGLIVIGVAVNED 343          
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: A0A836CH43_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH43_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.710e-24
Identity = 55/141 (39.01%), Postives = 88/141 (62.41%), Query Frame = 1
Query:   25 GPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKL---------------------------EVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLIIGDRALFDDHIEVST 366
            GP++G+ +G++GSF LG I+DD  +EIT+T+++C+SAF+++EAT L                           +VSG+L+VVT GL +S++ARGRIS    + M   WSM +YV+ T++F  +GL+IG+  LF + I+ + 
Sbjct:  149 GPLLGLAVGIVGSFVLGRILDDAFSEITITIVLCYSAFLLAEATALLFPQPISCDSAHVLSTATAAIACAPQIQVSGILSVVTLGLFLSYHARGRISNRAGDGMVVAWSMLSYVSVTMVFVTTGLVIGNEVLFANAIDAAA 289          
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: F0Y140_AURAN (Na_H_Exchanger domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y140_AURAN)

HSP 1 Score: 104 bits (260), Expect = 1.210e-23
Identity = 50/100 (50.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   25 GPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLII 324
            GPVVG  +G   +  LGY+++D L EIT+T+I C++AF ++E   +  SGVL+VV  G+ +S Y RGRIS  VEE +H+FW +  +VANT +FF+SGLI+
Sbjct:  204 GPVVGTAIGWCAATLLGYVLNDPLNEITITLITCYAAFAVAEGI-VGTSGVLSVVFAGMYLSRYGRGRISADVEENLHSFWGVLAHVANTAVFFLSGLIM 302          
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: A0A836CJL4_9STRA (Cation/H+ exchanger (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.460e-23
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   25 GPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLII 324
            GP +G VLG+  + +L  I++D L EITLT+++C+S ++++E T + VSGVLAVV  GL +S + R  +SP V+  M  FW++  +  NTVIFF++G+II
Sbjct:  139 GPAIGFVLGLAAAQALRLIVNDALAEITLTLVMCYSTWLVAENTPIHVSGVLAVVVMGLTLSRHGRPFVSPSVQGFMDDFWNLLEFCTNTVIFFVAGIII 238          
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Match: W7T4P8_9STRA (Salt overly sensitive 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4P8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.030e-22
Identity = 45/111 (40.54%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   25 GPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISEATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVIFFISGLIIGDRALFDDHIE 357
            GP +G+V+G L S+ LG +++D  +EIT+T++  + A++++E    E SGVL++V  GL +SF+  GRIS  V  ++ +FW+MA +++ T+IFF+SGLI+ ++AL  + ++
Sbjct:  222 GPAIGLVVGALTSYILGVLLNDPASEITMTILCGYGAYLLAELA--EASGVLSMVVAGLYLSFHGLGRISARVTGSLKSFWAMAAFISETIIFFVSGLIMAEKALISETVQ 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35044.9330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKR2_ECTSI8.670e-5079.09Sodium/hydrogen exchanger family protein n=1 Tax=E... [more]
A0A6H5L0H9_9PHAE4.420e-3358.33Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
A0A7S1UK40_9STRA3.270e-2848.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5A8DG13_CAFRO3.310e-2847.32Cyclic nucleotide-binding domain-containing protei... [more]
A0A4D9CXX3_9STRA5.740e-2546.36Na_H_Exchanger domain-containing protein n=2 Tax=M... [more]
A0A6H5LPB6_9PHAE8.380e-2545.37Na_H_Exchanger domain-containing protein n=2 Tax=E... [more]
A0A836CH43_9STRA2.710e-2439.01Sodium/hydrogen exchanger family-domain-containing... [more]
F0Y140_AURAN1.210e-2350.00Na_H_Exchanger domain-containing protein (Fragment... [more]
A0A836CJL4_9STRA3.460e-2346.00Cation/H+ exchanger (Fragment) n=1 Tax=Tribonema m... [more]
W7T4P8_9STRA5.030e-2240.54Salt overly sensitive 1 n=1 Tax=Nannochloropsis ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35044contigH-paniculata_contig35044:758..1802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue8.3e-42
Seed eggNOG ortholog2880.D8LKR2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.0774732-CDS-H-paniculata_contig35044:757..9731622930082.0774732-CDS-H-paniculata_contig35044:757..973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35044 758..973 -
1691481139.1252854-CDS-H-paniculata_contig35044:757..9731691481139.1252854-CDS-H-paniculata_contig35044:757..973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35044 758..973 -
1622930082.0974376-CDS-H-paniculata_contig35044:1643..18021622930082.0974376-CDS-H-paniculata_contig35044:1643..1802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35044 1644..1802 -
1691481139.1345553-CDS-H-paniculata_contig35044:1643..18021691481139.1345553-CDS-H-paniculata_contig35044:1643..1802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35044 1644..1802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35044.9330.1prot_H-paniculata_contig35044.9330.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35044 758..1802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35044.9330.1

>prot_H-paniculata_contig35044.9330.1 ID=prot_H-paniculata_contig35044.9330.1|Name=mRNA_H-paniculata_contig35044.9330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
SPAVEYYPGPVVGVVLGMLGSFSLGYIIDDGLTEITLTVIVCFSAFMISE
ATKLEVSGVLAVVTTGLVMSFYARGRISPGVEETMHTFWSMATYVANTVI
FFISGLIIGDRALFDDHIEVSTER*
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mRNA from alignment at H-paniculata_contig35044:758..1802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35044.9330.1 ID=mRNA_H-paniculata_contig35044.9330.1|Name=mRNA_H-paniculata_contig35044.9330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1045bp|location=Sequence derived from alignment at H-paniculata_contig35044:758..1802- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCCTGCTGTCGAATATTATCCAGGCCCCGTGGTTGGCGTGGTTCTTGG AATGCTGGGATCCTTCTCTCTGGGCTACATTATTGACGATGGTTTGACGG AGATCACGCTCACGGTAATTGTGTGCTTCAGCGCGTTCATGATATCGGAA GCCACAAAGGTGAACCATATTATCCATGATACTACTAATAACGCCAAAAA AATAGTTACAATGTATATATTTGTTAACACGAAAATGTTTTTTTTTTTTT TCGTCTGTTTTTTCTTGTTACGGTCTGTAAACGTTCAACTGCTGGTTGTT TATTTTTTTACTGTGTACTTATCGTAGTAATAAAGAGGCAGCGATAAACT TGCGACTTTTTATGCGAATGTGATAACTATATAGTATTATATATAGTATG ATTATATATATATATATTCAGTTTTTCGTTGTTGAAGTTCGTTTCACTTA CAAAATTAGCGATTGTGCTTGTCTTTTATGAGCAGCGGGCGTACATTAAA TCGATCATGACAGACTGATATAATGACGTAAAAAGGAAGCATTCATTTAT ATATATATATATGTATATATATATGTATAAATATATAAATATATATGCGA GCTTATATGTGGACAGTATGTATCAATTGATCTTACTGCAATTCATTTCA CGTGCAAAAAACAGCGAGTTCACTTTTTCCTTTCATGAGCAGCGGACTTG CATTACGTGGGTCATGCCAGTGTGGTGGAGGGAAATACCATAGCTGTCAT AGAATCGTACTCCAGATACCATGTATCAACTTGAACATCACCCTTTTTTT TTCTTTTTTTTTCGTTTTTTGTTCACCAGCTGGAGGTGTCCGGTGTGCTA GCGGTAGTGACGACGGGACTCGTGATGTCCTTCTACGCGAGAGGGCGTAT CTCTCCGGGGGTCGAAGAGACAATGCACACTTTCTGGAGCATGGCCACAT ATGTGGCGAACACGGTGATTTTCTTCATTAGCGGCCTCATTATCGGAGAC CGTGCGCTGTTCGATGATCACATCGAGGTGAGCACAGAAAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig35044:758..1802-

>mRNA_H-paniculata_contig35044.9330.1 ID=mRNA_H-paniculata_contig35044.9330.1|Name=mRNA_H-paniculata_contig35044.9330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig35044:758..1802- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCCTGCTGTCGAATATTATCCAGGCCCCGTGGTTGGCGTGGTTCTTGG
AATGCTGGGATCCTTCTCTCTGGGCTACATTATTGACGATGGTTTGACGG
AGATCACGCTCACGGTAATTGTGTGCTTCAGCGCGTTCATGATATCGGAA
GCCACAAAGTCTCCTGCTGTCGAATATTATCCAGGCCCCGTGGTTGGCGT
GGTTCTTGGAATGCTGGGATCCTTCTCTCTGGGCTACATTATTGACGATG
GTTTGACGGAGATCACGCTCACGGTAATTGTGTGCTTCAGCGCGTTCATG
ATATCGGAAGCCACAAAGCTGGAGGTGTCCGGTGTGCTAGCGGTAGTGAC
GACGGGACTCGTGATGTCCTTCTACGCGAGAGGGCGTATCTCTCCGGGGG
TCGAAGAGACAATGCACACTTTCTGGAGCATGGCCACATATGTGGCGAAC
ACGGTGATTTTCTTCATTAGCGGCCTCATTATCGGAGACCGTGCGCTGTT
CGATGATCACATCGAGGTGAGCACAGAAAGGTAGCTGGAGGTGTCCGGTG
TGCTAGCGGTAGTGACGACGGGACTCGTGATGTCCTTCTACGCGAGAGGG
CGTATCTCTCCGGGGGTCGAAGAGACAATGCACACTTTCTGGAGCATGGC
CACATATGTGGCGAACACGGTGATTTTCTTCATTAGCGGCCTCATTATCG
GAGACCGTGCGCTGTTCGATGATCACATCGAGGTGAGCACAGAAAGGTAG
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