mRNA_H-paniculata_contig3503.9328.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3503.9328.1
Unique NamemRNA_H-paniculata_contig3503.9328.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: D7G7V6_ECTSI (Acyl carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V6_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 2.820e-47
Identity = 102/150 (68.00%), Postives = 118/150 (78.67%), Query Frame = 1 
Query:   52 MQRVAALALGRAACVSTRRAGSAI-RGHSTLY--AWRQQSSAAPLGVTSLRQLHSSRLVAAGPAGGTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            MQRVA  ALGRAAC++ RRAGSA  RG S     +W+Q  +AA      +R  H SR VA G AG TF+++GDATARI+AVVK FEKVDPTKV++ A FKDDL LDSLDAVEVVMAIEDEFTIEIPDSEADKI  +ADAV++II+HPAAK
Sbjct:    1 MQRVAVAALGRAACLTARRAGSAAARGRSLQLHNSWQQAPAAA------VRHFHFSRPVA-GAAGDTFLDKGDATARIIAVVKAFEKVDPTKVSENALFKDDLALDSLDAVEVVMAIEDEFTIEIPDSEADKIAGIADAVAYIISHPAAK 143
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: A0A1E7ETX9_9STRA (Acyl carrier protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETX9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.720e-29
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:  181 VTSLRQLHSSRLVAAGPAGGTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            +T LRQ    R  AA     TF++ G+ + RI  VVK F+KVD  K+T+ A F +DLGLDSLDAVEVVMAIEDEF IEIPD+EADKIL+VADAV +I++HP AK
Sbjct:   22 LTGLRQPQIVRTFAAS----TFLDAGEVSTRIQGVVKNFDKVDQNKITETAKFTEDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYIVSHPMAK 121
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: A0A7S0UFZ0_9STRA (Acyl carrier protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFZ0_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.660e-28
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:  232 AGGTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            A  TF++ G+   RI  V+K F+KVD  KVTD A F DDLGLDSLDAVEVVMAIEDEF IEIPD+EADKIL+VADAV +I +HP AK
Sbjct:   32 AASTFLDSGEVAGRITGVIKNFDKVDGNKVTDTAKFTDDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYISSHPMAK 118
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: A0A448YUF5_9STRA (Acyl carrier protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUF5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.980e-28
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:  184 TSLRQLHSSRLVAAGPAGGTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            T +RQ  + R  AA     TF++  + + R+  V+K F+KVD  KVTD + F DDLGLDSLDAVEVVMAIEDEF IEIPD+EADKIL+VADAV +I +HP AK
Sbjct:   23 TGVRQAQAVRTFAAS----TFLDPAEVSGRVTDVIKNFDKVDANKVTDTSKFTDDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKILSVADAVEYISSHPMAK 121
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: A0A6U3TJ47_9STRA (Acyl carrier protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TJ47_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.210e-27
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:  175 LGVTSLRQLHSSRLVAAGPAGGTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            +  TSL +     ++    A  TF++  +AT RILAVVK F+KVD  KVT  + F DDLGLDSLDAVEVVMAIEDEF IEIPD+EADKI ++ADAV +I  HP AK
Sbjct:   20 MAATSLLRSQQQPMIVRTFAVSTFVDPAEATDRILAVVKNFDKVDQGKVTPESKFADDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKISSIADAVEYIAGHPMAK 125
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: A0A1Y1IJQ9_KLENI (Acyl carrier protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJQ9_KLENI)

HSP 1 Score: 113 bits (283), Expect = 4.920e-27
Identity = 57/90 (63.33%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:  223 AGPAGGTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            A  A GT++++G  T R+L+VVK F+KV+P+KVT  A+F  DLGLDSLD VEVVMA E+EF IEIPDSEADKIL+ ADA+ F+ +HP AK
Sbjct:   53 ADAAKGTYLDKGQVTDRVLSVVKNFQKVEPSKVTPTAHFTKDLGLDSLDTVEVVMAFEEEFGIEIPDSEADKILSTADAIEFVASHPQAK 142
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: A0A6U0HED3_9STRA (Acyl carrier protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0HED3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.890e-26
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:  232 AGGTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            A  TF++  +AT RI+ VVK F+KVDP+KV+  + F DDLGLDSLDAVEVVMAIEDEF IEIPD+EADKI ++ADAV +I  HP AK
Sbjct:   33 AASTFVDPTEATDRIVQVVKNFDKVDPSKVSPESKFADDLGLDSLDAVEVVMAIEDEFAIEIPDAEADKISSIADAVEYIAGHPMAK 119
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: A0A059LDR7_9CHLO (Acyl carrier protein n=2 Tax=unclassified Helicosporidium TaxID=2626013 RepID=A0A059LDR7_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 2.530e-26
Identity = 54/89 (60.67%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:  226 GPAGGTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            G A  +++++ D T+R+LA+VK FEKVDP KVT+ A F+ DLGLDSLD VE+VMA+E+EF IEIPD+EADKIL+V++AVS++ ++P AK
Sbjct:   41 GFADSSYLDKSDVTSRVLAIVKNFEKVDPAKVTESAAFQKDLGLDSLDTVELVMALEEEFAIEIPDAEADKILSVSEAVSYVASNPLAK 129
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: A0A6U4LK30_9STRA (Acyl carrier protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4LK30_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.810e-26
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  241 TFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            TF+E+G  T RI+ V+K F+KVD  KVT+ A FK+DLGLDSLDAVEVVMAIE+EF IEIPD+EAD I +V DA++FI +HP AK
Sbjct:   37 TFLEKGMVTERIMVVIKNFDKVDAGKVTEKATFKEDLGLDSLDAVEVVMAIEEEFAIEIPDAEADAIKSVEDAITFISSHPMAK 120
[Close]
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Match: D7SPM4_VITVI (Acyl carrier protein n=2 Tax=Vitis TaxID=3603 RepID=D7SPM4_VITVI)

HSP 1 Score: 110 bits (275), Expect = 4.660e-26
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:  238 GTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDLGLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK 492
            GTF+++ + T R+++VVK F+KVDP+KVT  ANF+ DLGLDSLDAVEVVMA+E+EF  EIPD+EADKI T+  AV FI +HP AK
Sbjct:   43 GTFLDKSEVTDRVISVVKNFQKVDPSKVTPTANFQTDLGLDSLDAVEVVMALEEEFGFEIPDNEADKINTINVAVDFISSHPQAK 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3503.9328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7V6_ECTSI2.820e-4768.00Acyl carrier protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A1E7ETX9_9STRA4.720e-2961.54Acyl carrier protein n=1 Tax=Fragilariopsis cylind... [more]
A0A7S0UFZ0_9STRA1.660e-2868.97Acyl carrier protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A448YUF5_9STRA6.980e-2860.19Acyl carrier protein n=2 Tax=Pseudo-nitzschia TaxI... [more]
A0A6U3TJ47_9STRA4.210e-2759.43Acyl carrier protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1Y1IJQ9_KLENI4.920e-2763.33Acyl carrier protein n=1 Tax=Klebsormidium nitens ... [more]
A0A6U0HED3_9STRA1.890e-2666.67Acyl carrier protein n=1 Tax=Helicotheca tamesis T... [more]
A0A059LDR7_9CHLO2.530e-2660.67Acyl carrier protein n=2 Tax=unclassified Helicosp... [more]
A0A6U4LK30_9STRA3.810e-2666.67Acyl carrier protein n=1 Tax=Phaeomonas parva TaxI... [more]
D7SPM4_VITVI4.660e-2664.71Acyl carrier protein n=2 Tax=Vitis TaxID=3603 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3503contigH-paniculata_contig3503:14834..17824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue1.8e-40
Seed eggNOG ortholog2880.D7G7V6
KEGG koko:K03955
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.acyl binding
EggNOG OGsCOG0236@1,KOG1748@2759
Ec32 ortholog descriptionAcyl carrier protein
Ec32 orthologEc-06_000160.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons3
Model size1073
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3503.9328.1prot_H-paniculata_contig3503.9328.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3503 15412..17773 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.6917334-UTR-H-paniculata_contig3503:14833..154111622930081.6917334-UTR-H-paniculata_contig3503:14833..15411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3503 14834..15411 -
1691481138.9826882-UTR-H-paniculata_contig3503:14833..154111691481138.9826882-UTR-H-paniculata_contig3503:14833..15411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3503 14834..15411 -
1622930081.7819417-UTR-H-paniculata_contig3503:17773..178241622930081.7819417-UTR-H-paniculata_contig3503:17773..17824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3503 17774..17824 -
1691481139.0324197-UTR-H-paniculata_contig3503:17773..178241691481139.0324197-UTR-H-paniculata_contig3503:17773..17824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3503 17774..17824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.7117462-CDS-H-paniculata_contig3503:15411..156031622930081.7117462-CDS-H-paniculata_contig3503:15411..15603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 15412..15603 -
1691481138.9982424-CDS-H-paniculata_contig3503:15411..156031691481138.9982424-CDS-H-paniculata_contig3503:15411..15603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 15412..15603 -
1622930081.7551928-CDS-H-paniculata_contig3503:16275..163381622930081.7551928-CDS-H-paniculata_contig3503:16275..16338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 16276..16338 -
1691481139.0113852-CDS-H-paniculata_contig3503:16275..163381691481139.0113852-CDS-H-paniculata_contig3503:16275..16338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 16276..16338 -
1622930081.7698777-CDS-H-paniculata_contig3503:17584..177731622930081.7698777-CDS-H-paniculata_contig3503:17584..17773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 17585..17773 -
1691481139.023206-CDS-H-paniculata_contig3503:17584..177731691481139.023206-CDS-H-paniculata_contig3503:17584..17773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 17585..17773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3503.9328.1

>prot_H-paniculata_contig3503.9328.1 ID=prot_H-paniculata_contig3503.9328.1|Name=mRNA_H-paniculata_contig3503.9328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MQRVAALALGRAACVSTRRAGSAIRGHSTLYAWRQQSSAAPLGVTSLRQL
HSSRLVAAGPAGGTFIERGDATARILAVVKGFEKVDPTKVTDIANFKDDL
GLDSLDAVEVVMAIEDEFTIEIPDSEADKILTVADAVSFIITHPAAK*
back to top

mRNA from alignment at H-paniculata_contig3503:14834..17824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3503.9328.1 ID=mRNA_H-paniculata_contig3503.9328.1|Name=mRNA_H-paniculata_contig3503.9328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2991bp|location=Sequence derived from alignment at H-paniculata_contig3503:14834..17824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAGCTCAAGAAGCACAAGCTACCTGCCTTTATCGCATTCTAGTTAGAA
CATGCAGCGTGTGGCGGCGTTGGCACTGGGAAGGGCAGCTTGTGTGTCCA
CAAGAAGGGCGGGATCGGCAATTCGGGGTCATTCAACATTGTACGCATGG
CGGCAGCAGTCGTCTGCCGCGCCCCTGGGGGTGACTAGTCTGAGGCAATT
GCACTCTTCGAGGCTGGTGGCGGCGGGGCCTGCAGGCGGAGTGAGTGTGC
AGTGCAGTTTTATGCAAGCTATGAAGTGTAGTTGTTTGTGTGCATATGGT
AGTGCCGAGCACTTTGAATACCGTGGTTACAGCGTGCCTTGGTAGTGTGA
CTATACTTCGTGTGATCTGGTGTTCCACAGCACCAATACAGAGTACACTG
ACGGAGTCTGGTATTGGAGGTCTTGATGACACGAGAGTTTGGTAGCCGTC
CGATGTGGGCCTCCATCACACCAATACATGGCCGATAGCTCTTGTGCGCT
GGGGATGAGCTGGGTAATGCAGCCTAGTCGAGTTCAGCTTGCATTTTCGG
GCGCTCTCTGCGTAGCAAGAGTTTATCCTTGGAGAGTATATCCGTGGTTC
TTGCTCTGCTGTTTTTTACCGCCGTAATTTGTGGTACATGTCGTACAAGC
CCGCCCTGAATTCGTGCTGATATCATTTATCAGTGCCAGCGTCTAAAATA
CCACCGAGTGCTGGAAAAACATCTGAGTGTTAGTGGCAAGTCACCGACCT
GTTTTGAGGACTACAGGAAATGTTGGCGTGTGCAGTAACTTGATGTAAGC
CAAGGTTACTGGGATGATGCCGCGACTCTCAGCAATGCAGAATAGTGTTC
ATATCATGGGTCTGATTAGCTCAAAAGTGGTGCAAATGTTGACCAATATA
CAAAACTTTCCCTTTGTTTTCGACTTGAAAAGTCATTGCCCACCGTTCGT
TGTTTGAGTTTGCCCGCCAGACGGTCAGTCGTTCCGGGTTGTATTACACC
AGGTTATTTGAAGAGCCTCTGAGCCCCCAAAATGAAGAAATGACCAAAAT
GTCTTTATTGTTAATCCTCCTCTCCGGAGGGGACCTCCGGATCCACCGTG
GGGAGCATTTCCGGACGGTGGTATACTTCCCCTCGGAGGCCCATTTCAGG
CCACGACCACTTCCGTGTCCGATACTAGTCGGGTGCTCAACTGGCGATTT
CAAAGCATACACAACAGTAGATAAAATGGTCATATGTAGCTACAGTACAG
TAGACTGTTTTGACGGTGAAAATATGCACTTAGGTGGTCTTCCATCGGCG
CCGTTGATTGACCCTAGTGGCATGAAGATGTAGTCACAACGTCAAGCGAA
TTGGACTTGCACTATACTGTTCACCTGCTGACATCTCCCTTCTCAGCATG
TATCAACTTCTCGTACATATCACATTCGCCTTTGGCTCACGAACTTTTTG
TGTACCGCTATTTTTTGTATGTATTTTGCTATTCAGACATTTATCGAGAG
GGGAGATGCGACGGCCCGCATTCTAGCAGTGGTGAAGGGCTTCGAGAAGG
TATGTAACAATAAGTTGCTGTCATTCGTACATGCTGTTCATTAATTTATG
CGCCCCTTGTGTCCAGTATTGTGCTGAATGGACAATCTTGCCTCGTTCTG
TCCTCTCCATAGAGCGCAGAGCACGTCGAACACGCAAAACGGCTACCCCA
CATAATTCCATCGGTTCATAAGTGATGAAACGAAGGAAGACCGATACGAT
TGTATAACCCGTGTTTTGCGGGGATCGGAAATCGGGACTTAGTACTTGTT
ACCTAGTCGTGGGCTTCAGCTCCTCCCCTCACAGCGCTTCCGAGTGGTGT
CAACAGTGGTTGTACACTCTGGGGTGGAAATCATTTGTGGAGTGCTTCGT
GGCCTGGAGGAACCTTTATTTTGACTGATGGTCGTTTCATTTTGATGAAA
TTCATGGGGCAAATAAGAAGATAAGAAATTTGCTCCAGTAGAGAAAATAA
GCAAACAAATTTTGTAGACTGCGATCCAGAAAATAAACGATACTCGTTGT
CCCCACCGGCAGGGGTATGCTTTTTGGAAGGATTTTGTAAGCGCAAAAAG
GATTAATGATGGAATTACCCCGATACTGGCCAATATTGCAAACTCTTTGC
TGTTACAGCGCCCACACGACCAACTTTTATGCTAATTGCAACAAGCGTAT
TCTTTACTCTGGGTACACCAGGTTGACCCCACCAAGGTAACGGACATCGC
AAACTTCAAGGATGACCTCGGCCTGGACTCGCTGGACGCCGTGGAGGTAG
TCATGGCTATCGAGGACGAGTTTACGATCGAGATCCCAGACTCGGAGGCA
GACAAGATCCTTACAGTAGCCGACGCGGTCAGCTTCATCATCACGCACCC
TGCCGCGAAGTAAATTTATAAGATATGAAGTATACAGCTTCCTGTCTACA
ATTTTTTGTTTTAGATTTTAGGGTGAGATCGGGATGCGGGTGACGGAGTG
CTAGTGCAATATGCCGAATGCAGCGGCGGGGTAGTTGACGACGTCGCAAC
CACAATTTGAGGGGTAAATAAGGTAGCCTGGTATGCGAAGAAACTCTCAT
GAATTCACTTGTACCTGCTTACTAGGCACTTGAATTGAGGACGATGGAGC
ATTTCTGTTTTGGAGGAGCGCATTTTATCATTGCACGAAAGTAAACTACG
CGAGGTGAATCAAGTTGTGTATTGGGATCTTGTCTGTTGCTGAAACTAGT
GAATGTATCAAATTCCAAAACTGTCTAGCATTTATTGGAGAATTTGAAAT
ATTAGTCAAGTGAAAAGGCGACCTAACACAACACAGCTACATCATGACCA
TGTACCCTTCCTTTGTTACAGAAGCAATTCAACATACCGCGTTGACATCA
GTACATATATACTCCTGTAGGCAGAGAAAAACTGACCCTTGAATAGTTAG
ATGTTATCTTCACTGACACTCTCCTGAAGAATCTGATCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3503:14834..17824-

>mRNA_H-paniculata_contig3503.9328.1 ID=mRNA_H-paniculata_contig3503.9328.1|Name=mRNA_H-paniculata_contig3503.9328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig3503:14834..17824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGTGTGGCGGCGTTGGCACTGGGAAGGGCAGCTTGTGTGTCCAC
AAGAAGGGCGGGATCGGCAATTCGGGGTCATTCAACATTGTACGCATGGC
GGCAGCAGTCGTCTGCCGCGCCCCTGGGGGTGACTAGTCTGAGGCAATTG
CACTCTTCGAGGCTGGTGGCGGCGGGGCCTGCAGGCGGAATGCAGCGTGT
GGCGGCGTTGGCACTGGGAAGGGCAGCTTGTGTGTCCACAAGAAGGGCGG
GATCGGCAATTCGGGGTCATTCAACATTGTACGCATGGCGGCAGCAGTCG
TCTGCCGCGCCCCTGGGGGTGACTAGTCTGAGGCAATTGCACTCTTCGAG
GCTGGTGGCGGCGGGGCCTGCAGGCGGAACATTTATCGAGAGGGGAGATG
CGACGGCCCGCATTCTAGCAGTGGTGAAGGGCTTCGAGAAGACATTTATC
GAGAGGGGAGATGCGACGGCCCGCATTCTAGCAGTGGTGAAGGGCTTCGA
GAAGGTTGACCCCACCAAGGTAACGGACATCGCAAACTTCAAGGATGACC
TCGGCCTGGACTCGCTGGACGCCGTGGAGGTAGTCATGGCTATCGAGGAC
GAGTTTACGATCGAGATCCCAGACTCGGAGGCAGACAAGATCCTTACAGT
AGCCGACGCGGTCAGCTTCATCATCACGCACCCTGCCGCGAAGTAAGTTG
ACCCCACCAAGGTAACGGACATCGCAAACTTCAAGGATGACCTCGGCCTG
GACTCGCTGGACGCCGTGGAGGTAGTCATGGCTATCGAGGACGAGTTTAC
GATCGAGATCCCAGACTCGGAGGCAGACAAGATCCTTACAGTAGCCGACG
CGGTCAGCTTCATCATCACGCACCCTGCCGCGAAGTAA
back to top