mRNA_H-paniculata_contig3503.9327.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3503.9327.1
Unique NamemRNA_H-paniculata_contig3503.9327.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3503.9327.1 vs. uniprot
Match: D7G7V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V8_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 3.410e-71
Identity = 239/505 (47.33%), Postives = 285/505 (56.44%), Query Frame = 2 
Query:   83 SILGLAGYGSDHSDEDDNEDVDRTSHNPDGSASSSIQNDHEEVVGGPIAAGVSGTAE----LLEDSDSRLLADSNSLGGEDMINARTGAVRASSFDAPAPPSRESRQFFMPLPSPLVRLDNGA--MASPFIPFDPNDGEGIEEDEAGAEGEDE--------DVGDGDIINPEYRDPDPAGKRPDMLPPEATGQANPQVQAKIAKYLDTMAGDFTKSIKGKKDFGNPAVLAQICHHCNVDDKGTNYPDDRMVHPSVYDTKDFHDSLMAEFRRNAKKYEESQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAPHMRATTVPGSLRPAADALVQVCASTAPQNPPLAGTTRKRGNKWGSAVPTVPSALPMM-----------------------------------------------GRPLTLQMVAVEA---AAAAAAGQVAI--NAH---------AQQRAEAIAKLQMITNRLA-AQDQGTKEQPTKKPRLS 1369
            S+LGLAGY +D SD D+  + ++   +P    +S  Q           AAG SG++     L E+SDSRL    +   G +    RTG +RASSFDAPAPPS+ESRQFFMPLPSPLV+LDN +   +SPFI ++P DG       AGAEGE E        D GDGDII PEYRD         MLPPEATGQANP+++AK+ K+L+ M GDFTK IKGKKD+GNPAVLAQIC +C+VDDKGTNYP DRMVHPSVYDTKDFHDSLM + +R AK+               XXXXXXXXXXXXXXXXXXXXXXXXXXXXX AA    AT   GS+    DA V          P  +G+TRKRG+KWG A  ++P A   M                                                 P++   V   A   A AA AGQ A+  NA          AQ RAEAIA++QMI NR   A    T+E P K+ RL+
Sbjct:    2 SLLGLAGYDTDGSDGDEGANNNQR-RSPQAENTSGAQEP---------AAGASGSSNANNALEENSDSRLGESVDEEAGANR-ELRTGILRASSFDAPAPPSKESRQFFMPLPSPLVKLDNASPSASSPFITYEPPDGTAGG---AGAEGEGEGAADDGAKDEGDGDIIKPEYRD---------MLPPEATGQANPELRAKLQKFLNRMQGDFTKVIKGKKDYGNPAVLAQICRYCSVDDKGTNYPADRMVHPSVYDTKDFHDSLMMQEQRRAKR--------------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA----ATGARGSV----DAAV----------PAASGSTRKRGSKWGVAGSSLPFAGQQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPVSKGRVGFSADPGATAARAGQAALLLNAQVQAAQAEKEAQHRAEAIARVQMIANRAGKAASASTQEPPKKQQRLN 451
[Close]
BLAST of mRNA_H-paniculata_contig3503.9327.1 vs. uniprot
Match: A0A6H5L310_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L310_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 5.470e-67
Identity = 162/330 (49.09%), Postives = 198/330 (60.00%), Query Frame = 2 
Query:  254 LLEDSDSRL--LADSNSLGGEDMINARTGAVRASSFDAPAPPSRESRQFFMPLPSPLVRLDNGA--MASPFIPFDPNDG-------EGIEEDEAGAEGEDEDVGDGDIINPEYRDPDPAGKRPDMLPPEATGQANPQVQAKIAKYLDTMAGDFTKSIKGKKDFGNPAVLAQICHHCNVDDKGTNYPDDRMVHPSVYDTKDFHDSLMAEFRRNAKKYEESQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAPHMRATTVPGSLRPAADALVQVCASTAPQNPPLAGTTRKRGNKWGSAVPTVPSALPMMGRPLTLQMVA 1210
            L E+SDSRL  L D       ++   R G +RASSFDAPAPPS+ESRQFFMPLPSPLV+LDN +   +SPF  ++P DG       EG  ED A    +DE  GDGDII PEYRD         MLPPEATGQANP+++AK+ K+L+ M GDFTK IKGKKD+GNPAVLAQIC +C+VDDKGTNYP DRMVHPSVYDTKDFHD+LM + +R AK+ +  +A                   XXXX                  P +R     G+ R + DA V          P  +G+TRKRG+KWG A     S+LP  G+ + +Q  A
Sbjct:   53 LEENSDSRLGELVDEEEGTNREL---RAGILRASSFDAPAPPSKESRQFFMPLPSPLVKLDNASPSASSPFTTYEPPDGATGGAGEEGGGEDVADDGAKDE--GDGDIIKPEYRD---------MLPPEATGQANPELRAKLQKFLNRMQGDFTKVIKGKKDYGNPAVLAQICRYCSVDDKGTNYPADRMVHPSVYDTKDFHDALMMQEQRRAKRPKPDEAKANTPHLNKVAQGATVAAAXXXX------------------PPLRPAAATGA-RGSVDAAV----------PAASGSTRKRGSKWGVAG----SSLPFAGQQMQMQAAA 335
[Close]
BLAST of mRNA_H-paniculata_contig3503.9327.1 vs. uniprot
Match: A0A024UG48_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG48_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.610e-5
Identity = 31/110 (28.18%), Postives = 57/110 (51.82%), Query Frame = 2 
Query:  542 IINPEYRDPDPAGKRPDMLPPEATGQANPQVQAKIAKYLD--TMAGDFTKSIKGKKDFGNPAVLAQICHHCNVDDKGTNYPDDRMVHPSVYDTKDFHDSLMAEFRRNAKK 865
            ++ P Y D  P              + +P +QAKI KYL+       F +S++ KK+F NP +LA++  + ++++  TN+P D +  P  YD  D+ + L  E ++  ++
Sbjct:   55 LVPPTYEDGSPDVPALXXXXXXXRARCDPTLQAKINKYLEHKERGMSFIESLRNKKEFDNPYILAKVVEYFSIEEMQTNFPKD-VFDPYGYDLGDYMEKLSMEVQKEQER 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3503.9327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7V8_ECTSI3.410e-7147.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L310_9PHAE5.470e-6749.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024UG48_9STRA2.610e-528.18Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3503contigH-paniculata_contig3503:8314..15431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.2
Seed ortholog evalue1.1e-64
Seed eggNOG ortholog2880.D7G7V8
Preferred nameSAP30BP
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0016070,GO:0016071,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045111,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:1901360,GO:1902494,GO:1990904
EggNOG free text desc.positive regulation of cell death
EggNOG OGsKOG2959@1,KOG2959@2759
Ec32 ortholog descriptionSAP30-binding protein
Ec32 orthologEc-06_000140.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2515
Cds size1296
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3503.9327.1prot_H-paniculata_contig3503.9327.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3503 8390..14288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.5734673-UTR-H-paniculata_contig3503:8313..83891622930081.5734673-UTR-H-paniculata_contig3503:8313..8389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3503 8314..8389 +
1691481138.9233527-UTR-H-paniculata_contig3503:8313..83891691481138.9233527-UTR-H-paniculata_contig3503:8313..8389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3503 8314..8389 +
1622930081.6494117-UTR-H-paniculata_contig3503:14288..154311622930081.6494117-UTR-H-paniculata_contig3503:14288..15431Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3503 14289..15431 +
1691481138.9723277-UTR-H-paniculata_contig3503:14288..154311691481138.9723277-UTR-H-paniculata_contig3503:14288..15431Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3503 14289..15431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.591088-CDS-H-paniculata_contig3503:8389..90461622930081.591088-CDS-H-paniculata_contig3503:8389..9046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 8390..9046 +
1691481138.9364617-CDS-H-paniculata_contig3503:8389..90461691481138.9364617-CDS-H-paniculata_contig3503:8389..9046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 8390..9046 +
1622930081.6077652-CDS-H-paniculata_contig3503:10582..107291622930081.6077652-CDS-H-paniculata_contig3503:10582..10729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 10583..10729 +
1691481138.9447865-CDS-H-paniculata_contig3503:10582..107291691481138.9447865-CDS-H-paniculata_contig3503:10582..10729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 10583..10729 +
1622930081.6247792-CDS-H-paniculata_contig3503:13162..135791622930081.6247792-CDS-H-paniculata_contig3503:13162..13579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 13163..13579 +
1691481138.9534144-CDS-H-paniculata_contig3503:13162..135791691481138.9534144-CDS-H-paniculata_contig3503:13162..13579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 13163..13579 +
1622930081.6367772-CDS-H-paniculata_contig3503:14213..142881622930081.6367772-CDS-H-paniculata_contig3503:14213..14288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 14214..14288 +
1691481138.962722-CDS-H-paniculata_contig3503:14213..142881691481138.962722-CDS-H-paniculata_contig3503:14213..14288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3503 14214..14288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3503.9327.1

>prot_H-paniculata_contig3503.9327.1 ID=prot_H-paniculata_contig3503.9327.1|Name=mRNA_H-paniculata_contig3503.9327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=432bp
MASILGLAGYGSDHSDEDDNEDVDRTSHNPDGSASSSIQNDHEEVVGGPI
AAGVSGTAELLEDSDSRLLADSNSLGGEDMINARTGAVRASSFDAPAPPS
RESRQFFMPLPSPLVRLDNGAMASPFIPFDPNDGEGIEEDEAGAEGEDED
VGDGDIINPEYRDPDPAGKRPDMLPPEATGQANPQVQAKIAKYLDTMAGD
FTKSIKGKKDFGNPAVLAQICHHCNVDDKGTNYPDDRMVHPSVYDTKDFH
DSLMAEFRRNAKKYEESQAQASQQQALQQQQAAAQAQAQAQAQAQAQAAQ
AAAIAAAGAAPHMRATTVPGSLRPAADALVQVCASTAPQNPPLAGTTRKR
GNKWGSAVPTVPSALPMMGRPLTLQMVAVEAAAAAAAGQVAINAHAQQRA
EAIAKLQMITNRLAAQDQGTKEQPTKKPRLS*
back to top

mRNA from alignment at H-paniculata_contig3503:8314..15431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3503.9327.1 ID=mRNA_H-paniculata_contig3503.9327.1|Name=mRNA_H-paniculata_contig3503.9327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7118bp|location=Sequence derived from alignment at H-paniculata_contig3503:8314..15431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGTGAAGATTAACGGGAGAAACATACGTCGTAAGCAGGAATCGACTG
GAAGTGCGCAGCATATCAAGAAAGGAATGGCGTCCATATTGGGCCTTGCG
GGCTATGGTTCAGATCATAGTGACGAAGATGACAACGAAGATGTCGACCG
CACGTCGCACAACCCAGACGGTAGTGCCAGCAGTAGCATTCAAAATGACC
ACGAGGAGGTGGTCGGGGGGCCAATCGCAGCAGGCGTCAGTGGAACAGCA
GAGCTGCTTGAGGACTCTGACAGTCGATTATTAGCAGACTCAAATTCGTT
AGGGGGAGAGGATATGATCAACGCTAGAACAGGGGCTGTGAGGGCGTCTT
CATTCGATGCTCCGGCGCCGCCTTCGAGGGAGTCGAGGCAGTTCTTCATG
CCGTTGCCATCGCCGCTGGTGCGACTCGACAACGGAGCGATGGCTAGCCC
CTTCATCCCGTTCGACCCAAATGATGGAGAAGGTATAGAGGAGGATGAGG
CGGGGGCAGAAGGGGAGGATGAAGATGTGGGAGATGGTGATATTATCAAC
CCCGAGTATAGAGATCCTGACCCTGCGGGCAAGCGGCCGGACATGCTGCC
GCCGGAGGCGACGGGGCAGGCGAATCCGCAGGTGCAGGCTAAAATCGCGA
AGTATTTGGACACTATGGCAGGCGACTTCACGAAGAGCATCAAGGGAAAG
AAGGACTTTGGAAACCCAGCGGTCCTTGCTCAGGTGGAGCCTTTCCTCAG
TGACTCATACCGCTTGGTTAGCTTTCTTTGAGAGTAGCATTGTCGGAGTT
ACTTTAGTCTAGCCAAGTTGCTGACTCTTGAAAGTTTCAGAGTTCATTTT
TTTTTTTTCTCAACACTCCATAAAAGAAATGTTGCTTGGCGGTATCTGGG
GCCGAGGAAGTAGAGGTCCAGCACAACTGCTGGTATACAGCGTAGAGGAT
CTTTGTAACTACCTCTTTCAAGAACCCCTTTTACTTACTATCCGTTTCAG
CACACAAACGGCTCGTGTGTATGGAATGAAAAGAGGAATTATAACCGCCA
ATTGTACGAAACGTGAGGTCATTTCCCAACGATTGCAGGTATCTTGCCAT
AATTCACAACTATGCGCATACAAAGCCACTATACGTACGGACACACCTCC
TCACTAGCGTCTATTTGCACGTGGAGTTGGGTGCCTACCGACAGGAGATA
AATCACAATTGGAATCAAAAACTTGTTTTTAGGTCGACCTCCTTTTGTTT
TCGTAGTGCAGACTACTTCGCGCCCTCTAGTGTTTAGTTCGCGCCTTAGC
ATAACCACTGTAGTCGCTCGCAGCACTGATGACCCCGGTTTGTCGGGGTG
GTGGTGATATACATCGCACGAGATGAATGCAAGTTCCTTTCTGACTTCTA
GCCTACTCTGCCGACAACCCGGGTCCAAAACGAAGCTCACCCAAGGACAA
TGGCTTCCCAGTTGTGAACAAGCTCAGGTTGAAAAACGTTGACGAAGGTT
GTACGTGCAGGTGTTTAGTGGTAGATTATACCTAGGCTTTGACAGCCCGA
GTGTCAGTGACGGGCCCCCTTTAAATTGTGGAAGGGCGTAAATTCCTAAG
CAAGTATAGGCGCATTGCTTGAATATAGCTCGTGCACGAGTCAATATTGC
GATGTGTTCCTGGTGCACAAGCTCAGACCCAGGCAATTTTCCACACATGC
AAGGACTAATTGAGACCCTTAACACTCATCGAAAACGGAGCTCCCTTTCT
CTGCGATCCTGTTTATATTTTACGCTTCAGACTGTGTGCATGCATCAATG
TGGTATGTTACAGCTGATCCCTTCTCCAGCTCGGCATCTCTCGGGAGTCA
GGATTTTGGTGTCAAGGGGGGTACCATCGCCTAATCAGTCGTTTCAGACG
ACTAAATAGTCGTTGTATATGTCCATCTTTTCAATATTATCAATGCCAAA
TTGGTAATGCTCAGTACATTAAGCCCTTACACAGTGAACAAAGATGCCAA
AAGTGAGATTTTGATTTTCCAAATCAATGCCTAGTTGTGTGTGCTTGCAT
GTAGTGTCTGCCGCGGTCCCTAATGGTGTGTCGAGAATTGCCAAATTTTG
CTGAAATACCCTATTAAAACACCACTCGCTCCGTCCGCCGGGATAAAGAT
ATTCGGTCTGTGCCATAGTTTGATGAGGGTATCACATTTCAACACCGCTT
CGTACAATGAAGTTTTTTGTCCTTATAGGTAAACAGCATATTACTCTGCT
TCTTTCTCTGCTCTCTCAGATCTGCCACCATTGCAACGTGGATGACAAGG
GCACCAACTACCCAGACGATCGCATGGTTCATCCTTCCGTTTACGACACC
AAGGATTTCCACGATTCCCTCATGGCCGAGTTCAGGAGGAACGCAAAAAA
GTATGAAGAATCCCAGGTTCGTTGATGGCGTGTACCCCCTGTGTTTTGTT
CTCGGGGTTATGTGTTTCAACTTTGGGGCCTCTTGCTTCTTTGTCATGTG
AAGTGAGTCTTATAATCGGCATGCCCTTGCCACTTGTGCTTAGCATGTTT
TCACTGTGCTGTATGCGAGAAATCGTGCAAGAAGCCATGCTACCGTCGCA
CTTTGGAGTCAAAAGGTATCCTTGACCTGCAAGTGAGGGACTTTGTCGCG
TCCTCATCTCGGGACGGGCTCAGTTTGTAGTCACCTGCCGTTGCCATCAA
AAGTGATGGTAAAAGCACCGAGTGCCAAGGCGCCCGTTTGTATTGATTGC
ATCAATGGGTTTGCCCAGGGGGCGGGAGGGTGGGGAATATATCAAAAGAA
AGTGAGGTCAACTGGGCGGTGAATTTACGGTGACACCCAACGCAAACTCA
TACAAATGACGTGTTTGCTGCCGGGGTAGAGTTAGCCGGGGCGTGATGGC
CACGGGGCGCGGAGAGTGAAAGGACGTTACTGAGTGGAAAACAAATTTTC
AGTTGCCATGTGCTGTAGATGTGAGCCGGGGTACAGCTCGGCTCTGGTTT
ATGGGTGTAATCTGGATGCAATCAACAATATTTTATGGTACAGGGATGCA
GGTAATGTCGCACCTTCCTCCCACAGAAGACTGCGATGTGCCACACGCGT
ATGCCCTATCAGTGCCTTTGAGTGATGTAGTGGCATACGTGAGCACCGTG
CGGAAGCGAGCGTTAAGGCTGGCGAAGAATCTCACAAATTGCTGCAGTTG
CGTTAGCTTGTTTGTTCTCCTCCTGGTCCTGCGTCTTGTCCCTCATGATT
GCCTCCTTTTCTCCCGCAACGAGTAGAGAATTTCACCTACTTTGTAGTTC
ACTCCAAGATTTCTGCCATGTACTCTAATGCATTCTCTGAAGGCAAGCGA
ACGATAAATGAAAACCTCTACTTATTTCAGTATGGCACTTCGTGCTACCC
CGTCATACCATCACAGTTGGCACAAGGACGTGAGAAACACTACTGTTTTT
TTTTGTTTAGAAACTCGGCTTCATTCCCGCCCAGATACGTTTTACAACGG
GAGGGGACTGCCAAACTTAAAAGCGCACACGCGCTGCTCCCAGCCGGTGT
TGGATTTGATCGGCTCACTTTGTGTAAATCTAAGTAGTGACCTATTTACC
ACAGCTAACCAATATAGAGTTCAAGTGTTTTAGCTACTGAAAACTTGGTA
CCCCGACAGTCTTGACATCTTGTTAATCTGTACTTGACGTTTGCTTGAGC
TCCCCTACTAGGGCGCTCAGAAAAACCGCGGTGCCAATTCCCCGTGACCG
TCCGGGATACTAACGTTTTGATAAGTACTATAAACATACAAACCATGGAG
ATTTCAATGTGTAACCGAGTAGCTGGTAACACAACGGCAATCGACTCTAT
GCCATCAAATCAGAGCGGATAAACACGATTTTCGGGAGAATCGGGTCAAA
GACCGTGGCGGCTATATCTTGATAATAGTATAGATATATGGCTTACAGGA
ATTATTTTGTCTAACATCACGGATAGATGCGCTTGCACTTCCACGGAAAG
GGTTTTGTCTCCCTTTTATGTGCATGTGTTCTATTGTAGGTACATATTTG
CGTATTAGGTACCTCGAAAGTCGTCGGGTCATCGTGACTACCCTGAAGCG
GGCATATACGGAGAATAACACCCAATCGAACGGGGGATGGTGATCGTGTT
CAAGGCAGGGCATGCATTGCTTGTATCCCCCGTTGGAAGATTTTTTTTGT
CATCCTCGCCCGAGTTAGGCGTTTTTTAAATTACAACCTCTCACGGTGGC
AAAGACAACGCCAGTAGCCTGTAACAGCCCTCAGTGATAGGTAACAACTC
CCCTCTGGGATGCGGGAGCATGTTTTCGGAGGGGATGGGGGTCATCGTCT
GATATGATAGGGTACAGATGTGATAGTGGTACCCTTCACGTGTTCGGGGG
CATCGTAGTCCGCCCGCAACTAGATAATAGGGTGGAAAACACCCTCCGGG
TCCCCCATCCCCTGTATCTTACTGTTTTGTACATTTTGGGCGAAACCCGA
TAATATCGACCCCTCATCCAAACTGCAGCTACGCTCATGTATCCATGTAC
TCCTACCTATCCTCAATTCAATTTGTGACTCTTCATGAGTTTTGGAATGT
ATTGAACCCCCCTTCCGAAAAAAAATATTGGCCTGTATCACTGTAGAAGT
ACCTTGTAGTACTGCGACATTACTGCATCTTTTGCTGATATTCGGTGCGT
TCTGAAGGTTTTGGAATAGATTGAGAACTCGGCTAGCTCCATGATTCGTA
GAACTGCCACGGTAGACACTCGTCCATACGACCGAATCACTTCGGTGTAT
TGCTCTCTTTATTCTTGCGCATCTTGCTATTTGGTATCTTTTCCTGCAGG
CGCAGGCGTCACAACAACAGGCGCTACAGCAGCAACAAGCAGCAGCGCAG
GCGCAAGCTCAGGCGCAAGCTCAGGCGCAAGCTCAGGCAGCTCAGGCGGC
CGCCATAGCAGCCGCAGGAGCAGCACCACACATGCGCGCTACTACCGTAC
CAGGCTCTCTCAGGCCGGCAGCCGACGCACTCGTGCAGGTTTGTGCATCT
ACCGCGCCACAAAACCCCCCTTTGGCGGGAACCACGCGCAAGCGAGGCAA
CAAGTGGGGCAGCGCCGTGCCGACGGTACCGAGCGCGTTGCCTATGATGG
GAAGGCCGTTGACATTACAGATGGTGGCAGTGGAGGCAGCGGCGGCAGCG
GCCGCGGGGCAAGTGGCAATTAATGCGCACGCACAGCAGCGGGCAGAAGC
GATTGCGAAGTTGCAGGTGCTTACAGGGCGGGGGGGTGTCGCTCTTTCGC
CGCGTTAAAAGGAAGACTATTGGCGCTTGCATATTAGTTGAGTACAAACG
ATGTTCGGAAGGTGGTATCCTCCTTTTCAAGAACCGAAAACGCACCGTGA
TGTGGTTGGGTGCCAATAAATTTGCGCTTTTCAACGTTGCGAAATTCTTA
CCCAGAGGCTGAGCATTGTTGCCACGGTATGGTGAGCGTAAAGCACGCGT
TGACTAAACGACGCCTAATTGCTGTTCGGAACAGTACCCTCCTTAAGTAG
CGCCCCATCCTATATTCTCAGGTATTTAGTTGGATTCTCGTTCGAGAGGG
TGCATTATTTTCCCCCTTGGTACAAAGCCCCTCCTTCCTCCCGCCCTGTT
TTCGGGTCCACATATATTTCATTTTATCACCAGTGTTCACTTTAGCCGTT
TAGGCTCGATATATGCAAGTCACATCGGTCATATGACCGACCCGAAACCT
AGTGTTTGAGTTTGTACTCGCGCATGGATCTTTCTTGTGTTCTACTCTCT
CCTCACGCAACAGTAACCAGTTTCTGTTCAACAGGCGGCGTCTCACGCGT
TGGTTCTCCCGTCTCCCGCCTCACGATGCCACTGGTGATTTGTCTCACAG
ATGATCACTAACAGACTGGCTGCGCAAGATCAAGGAACGAAGGAGCAACC
AACCAAGAAACCGAGGTTGTCGTGACACGTTTTATTTTCACGAGAAGGGT
TCGATTGTAAAAAGATTTTTGTTGCCCCCGCGTTGGAGGGTTGGAGGTTA
CAACATGCTCACGCTGGCAACATTAGAGGAGTGACACGGTTTTGATATTG
TAACATGTGTGCGGAGTGGTCCAGGTCCAATGTGGAATATAGTGTGAAAC
TTCCGTGTCATGGAGTCGGACATTTTGACGCGTATATGATGTGCATTGTT
TTCTCTTTGTAAAACAAAAGAGTTGAGTGAAAGTTGTTTGACATGTGCAT
CATTGTACACATTACTTGAAGATATGGTTGTAACTGACATTACTTCGCAT
ATGATTTTCTATTGGATGTTTACTATTTTCCTATGACAGATTCCGCCATT
AATCGGTATCTGTGATATGATCAGTGTTTTGTTTGGTGTACGTCATTTTT
CCTATTGTGTGATTCATCTTTTTCCCAGTTAAAATTATATATGAGCATAA
TATGTTAATTTTTCCTTGTACATTACTTATATTAATTCAATAGCAGCATG
CGCACATGAGTTGAGAATAACCCGATCAGATTCTTCAGGAGAGTGTCAGT
GAAGATAACATCTAACTATTCAAGGGTCAGTTTTTCTCTGCCTACAGGAG
TATATATGTACTGATGTCAACGCGGTATGTTGAATTGCTTCTGTAACAAA
GGAAGGGTACATGGTCATGATGTAGCTGTGTTGTGTTAGGTCGCCTTTTC
ACTTGACTAATATTTCAAATTCTCCAATAAATGCTAGACAGTTTTGGAAT
TTGATACATTCACTAGTTTCAGCAACAGACAAGATCCCAATACACAACTT
GATTCACCTCGCGTAGTTTACTTTCGTGCAATGATAAAATGCGCTCCTCC
AAAACAGAAATGCTCCATCGTCCTCAATTCAAGTGCCTAGTAAGCAGGTA
CAAGTGAATTCATGAGAGTTTCTTCGCATACCAGGCTACCTTATTTACCC
CTCAAATTGTGGTTGCGACGTCGTCAACTACCCCGCCGCTGCATTCGGCA
TATTGCACTAGCACTCCGTCACCCGCATCCCGATCTCACCCTAAAATCTA
AAACAAAAAATTGTAGACAGGAAGCTGTATACTTCATATCTTATAAATTT
ACTTCGCGGCAGGGTGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3503:8314..15431+

>mRNA_H-paniculata_contig3503.9327.1 ID=mRNA_H-paniculata_contig3503.9327.1|Name=mRNA_H-paniculata_contig3503.9327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2592bp|location=Sequence derived from alignment at H-paniculata_contig3503:8314..15431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTCCATATTGGGCCTTGCGGGCTATGGTTCAGATCATAGTGACGA
AGATGACAACGAAGATGTCGACCGCACGTCGCACAACCCAGACGGTAGTG
CCAGCAGTAGCATTCAAAATGACCACGAGGAGGTGGTCGGGGGGCCAATC
GCAGCAGGCGTCAGTGGAACAGCAGAGCTGCTTGAGGACTCTGACAGTCG
ATTATTAGCAGACTCAAATTCGTTAGGGGGAGAGGATATGATCAACGCTA
GAACAGGGGCTGTGAGGGCGTCTTCATTCGATGCTCCGGCGCCGCCTTCG
AGGGAGTCGAGGCAGTTCTTCATGCCGTTGCCATCGCCGCTGGTGCGACT
CGACAACGGAGCGATGGCTAGCCCCTTCATCCCGTTCGACCCAAATGATG
GAGAAGGTATAGAGGAGGATGAGGCGGGGGCAGAAGGGGAGGATGAAGAT
GTGGGAGATGGTGATATTATCAACCCCGAGTATAGAGATCCTGACCCTGC
GGGCAAGCGGCCGGACATGCTGCCGCCGGAGGCGACGGGGCAGGCGAATC
CGCAGGTGCAGGCTAAAATCGCGAAGTATTTGGACACTATGGCAGGCGAC
TTCACGAAGAGCATCAAGGGAAAGAAGGACTTTGGAAACCCAGCGGTCCT
TGCTCAGATGGCGTCCATATTGGGCCTTGCGGGCTATGGTTCAGATCATA
GTGACGAAGATGACAACGAAGATGTCGACCGCACGTCGCACAACCCAGAC
GGTAGTGCCAGCAGTAGCATTCAAAATGACCACGAGGAGGTGGTCGGGGG
GCCAATCGCAGCAGGCGTCAGTGGAACAGCAGAGCTGCTTGAGGACTCTG
ACAGTCGATTATTAGCAGACTCAAATTCGTTAGGGGGAGAGGATATGATC
AACGCTAGAACAGGGGCTGTGAGGGCGTCTTCATTCGATGCTCCGGCGCC
GCCTTCGAGGGAGTCGAGGCAGTTCTTCATGCCGTTGCCATCGCCGCTGG
TGCGACTCGACAACGGAGCGATGGCTAGCCCCTTCATCCCGTTCGACCCA
AATGATGGAGAAGGTATAGAGGAGGATGAGGCGGGGGCAGAAGGGGAGGA
TGAAGATGTGGGAGATGGTGATATTATCAACCCCGAGTATAGAGATCCTG
ACCCTGCGGGCAAGCGGCCGGACATGCTGCCGCCGGAGGCGACGGGGCAG
GCGAATCCGCAGGTGCAGGCTAAAATCGCGAAGTATTTGGACACTATGGC
AGGCGACTTCACGAAGAGCATCAAGGGAAAGAAGGACTTTGGAAACCCAG
CGGTCCTTGCTCAGATCTGCCACCATTGCAACGTGGATGACAAGGGCACC
AACTACCCAGACGATCGCATGGTTCATCCTTCCGTTTACGACACCAAGGA
TTTCCACGATTCCCTCATGGCCGAGTTCAGGAGGAACGCAAAAAAGTATG
AAGAATCCCAGATCTGCCACCATTGCAACGTGGATGACAAGGGCACCAAC
TACCCAGACGATCGCATGGTTCATCCTTCCGTTTACGACACCAAGGATTT
CCACGATTCCCTCATGGCCGAGTTCAGGAGGAACGCAAAAAAGTATGAAG
AATCCCAGGCGCAGGCGTCACAACAACAGGCGCTACAGCAGCAACAAGCA
GCAGCGCAGGCGCAAGCTCAGGCGCAAGCTCAGGCGCAAGCTCAGGCAGC
TCAGGCGGCCGCCATAGCAGCCGCAGGAGCAGCACCACACATGCGCGCTA
CTACCGTACCAGGCTCTCTCAGGCCGGCAGCCGACGCACTCGTGCAGGTT
TGTGCATCTACCGCGCCACAAAACCCCCCTTTGGCGGGAACCACGCGCAA
GCGAGGCAACAAGTGGGGCAGCGCCGTGCCGACGGTACCGAGCGCGTTGC
CTATGATGGGAAGGCCGTTGACATTACAGATGGTGGCAGTGGAGGCAGCG
GCGGCAGCGGCCGCGGGGCAAGTGGCAATTAATGCGCACGCACAGCAGCG
GGCAGAAGCGATTGCGAAGTTGCAGGCGCAGGCGTCACAACAACAGGCGC
TACAGCAGCAACAAGCAGCAGCGCAGGCGCAAGCTCAGGCGCAAGCTCAG
GCGCAAGCTCAGGCAGCTCAGGCGGCCGCCATAGCAGCCGCAGGAGCAGC
ACCACACATGCGCGCTACTACCGTACCAGGCTCTCTCAGGCCGGCAGCCG
ACGCACTCGTGCAGGTTTGTGCATCTACCGCGCCACAAAACCCCCCTTTG
GCGGGAACCACGCGCAAGCGAGGCAACAAGTGGGGCAGCGCCGTGCCGAC
GGTACCGAGCGCGTTGCCTATGATGGGAAGGCCGTTGACATTACAGATGG
TGGCAGTGGAGGCAGCGGCGGCAGCGGCCGCGGGGCAAGTGGCAATTAAT
GCGCACGCACAGCAGCGGGCAGAAGCGATTGCGAAGTTGCAGATGATCAC
TAACAGACTGGCTGCGCAAGATCAAGGAACGAAGGAGCAACCAACCAAGA
AACCGAGGTTGTCGTGAATGATCACTAACAGACTGGCTGCGCAAGATCAA
GGAACGAAGGAGCAACCAACCAAGAAACCGAGGTTGTCGTGA
back to top