mRNA_H-paniculata_contig35022.9326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35022.9326.1
Unique NamemRNA_H-paniculata_contig35022.9326.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.280e-14
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 PLNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNG-VENWLDNIPIYSQTFGEH 330
            PLN LT  + G +G++ S+ +++   ++F+ +D+   + Q  I   D+ K AFRDA    +++ RC FG+  +PA  S  +   L   +  G +E WLD+I I+S+T  EH
Sbjct:  872 PLNNLTVKNSGGIGNLASMHDRVRKSKWFTLLDLPQAYHQIPIKPSDRPKTAFRDARGRLYQFTRCSFGLTTIPAVFSALLGDTLRPTESKGGIERWLDDILIHSETLEEH 982          
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A158P5B0_TETUR (Reverse transcriptase domain-containing protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P5B0_TETUR)

HSP 1 Score: 76.3 bits (186), Expect = 1.040e-13
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
            LN LT  D+  L  I  + ++L G +YFS++DV   +   E+  E   K AF   H   +E+    FG+K  PA   R +  +LG+L  NG  N+LD+I IYS+TF EH  L+   F
Sbjct:  570 LNALTIDDKMPLPRINDVIDRLQGSKYFSTLDVKWGYWHIEMDPESIEKTAFV-THEGHYEWLVMPFGLKNAPATFQRILQRVLGSLLYNGAINYLDDIIIYSKTFSEHLQLLEKIF 685          
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A158P4Q1_TETUR (RNA-directed DNA polymerase n=1 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P4Q1_TETUR)

HSP 1 Score: 76.3 bits (186), Expect = 1.060e-13
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
            LN LT  D+  L  I  + ++L G +YFS++DV   +   E+  E   K AF   H   +E+    FG+K  PA   R +  +LG+L  NG  N+LD+I IYS+TF EH  L+   F
Sbjct:  197 LNALTIDDKMPLPRINDVIDRLQGSKYFSTLDVKWGYWHIEMDPESIEKTAFV-THEGHYEWLVMPFGLKNAPATFQRILQRVLGSLLYNGAINYLDDIIIYSKTFSEHLQLLEKIF 312          
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A158P4S6_TETUR (RNA-directed DNA polymerase n=2 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P4S6_TETUR)

HSP 1 Score: 76.3 bits (186), Expect = 1.080e-13
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
            LN LT  D+  L  I  + ++L G +YFS++DV   +   E+  E   K AF   H   +E+    FG+K  PA   R +  +LG+L  NG  N+LD+I IYS+TF EH  L+   F
Sbjct:  570 LNALTIDDKMPLPRINDVIDRLQGSKYFSTLDVKWGYWHIEMDPESIEKTAFV-THEGHYEWLVMPFGLKNAPATFQRILQRVLGSLLYNGAINYLDDIIIYSKTFSEHLQLLEKIF 685          
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A6H5J9L6_9HYME (Reverse transcriptase domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5J9L6_9HYME)

HSP 1 Score: 63.9 bits (154), Expect = 1.970e-9
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
            LN  T  D   L +I  I ++L G  YFS+ D+AS+F Q  + E+DK K AF   +   ++Y R   G+K  PA   R +  +L  L+   +  +LD+I +Y++   EH + +   F
Sbjct:   25 LNKKTIGDAYPLPNITDIMDQLGGASYFSTFDLASEFHQIPMKEDDKWKTAFSTLN-GHFQYKRMPMGLKNAPATFQRLMDKVLRGLQNIEMLVYLDDIIVYAKDLKEHDSKVRRLF 140          
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A8J6AXG2_9EUKA (Uncharacterized protein n=2 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6AXG2_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 2.120e-9
Identity = 37/117 (31.62%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
            LN +++  R  L +I+SI ++LNG +YF+++D+ S + Q  +      + AF   H   +E+ R  FG+K  P+   R +  +L  L G GVE +LD++ +++ T   H +L+   F
Sbjct:  502 LNSVSRDFRFPLQNIKSILSRLNGSKYFTTLDLRSGYHQFPLDAIAVPRTAFA-THNGLYEFVRVPFGLKNAPSYFQRGMMRILAPLLGRGVECYLDDVIVHASTIEGHNSLLHQVF 617          
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A158P5P0_TETUR (Uncharacterized protein n=2 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P5P0_TETUR)

HSP 1 Score: 61.6 bits (148), Expect = 1.350e-8
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSFR 357
            LN +T  D+  L +IQ   + L GM+YF+ +D+ S + Q  +   D+ K AF       +EY R  FG+   P+   R +SI+LG L  N    ++D++ I+S+   EH   +   FR
Sbjct:  457 LNEITVKDKFPLPNIQDYLDSLQGMKYFTLLDLRSGYHQMALDPSDQPKTAFVTPS-GLYEYTRLPFGLANGPSSFMRMMSIVLGGLIYNTCLIFIDDLLIFSKNEEEHLERLETIFR 573          
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A0C2MZH8_THEKT (Transposon Tf2-9 polyprotein n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2MZH8_THEKT)

HSP 1 Score: 61.6 bits (148), Expect = 1.390e-8
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFR-DAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEH 330
            LN +TK D   L  I  +F++LNG +YF+S+D+ S + Q  + E DK K AF        +E+N   FG+   P+   R +  +L  LK      +LD+I I+S+++ EH
Sbjct:   40 LNNVTKRDEYSLPSIDQLFDRLNGAKYFTSLDLYSGYWQCTLEENDKEKTAFSVGIGEGLYEFNVLPFGLCNAPSSFHRLMDSVLTPLKCCFA--YLDDILIFSKSWTEH 147          
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: UPI001F903E4E (Uncharacterized protein n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F903E4E)

HSP 1 Score: 61.6 bits (148), Expect = 1.430e-8
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEH 330
            LN +T TD+  +  I  I +KL G +YF+  D+A+ +    I  ED  K AF   H    E+    FG+K  PA   R I  ++   +   VEN+ D+I ++S  F +H
Sbjct:  575 LNDVTITDKQPIPIIDDIIDKLYGKKYFTKFDIANGYWHVPIAHEDIPKTAF-STHNQHLEWLVMPFGLKNAPATFQRAIRGVIMKHQLKNVENYFDDIIVFSDDFEQH 682          
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: UPI001FA23942 (Uncharacterized protein n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001FA23942)

HSP 1 Score: 61.6 bits (148), Expect = 1.460e-8
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEH 330
            LN +T TD+  +  I  I +KL G +YF+  D+A+ +    I  ED  K AF   H    E+    FG+K  PA   R I  ++   +   VEN+ D+I ++S  F +H
Sbjct:  550 LNDVTITDKQPIPIIDDIIDKLYGKKYFTKFDIANGYWHVPIAHEDIPKTAF-STHNQHLEWLVMPFGLKNAPATFQRAIRGVIMKHQLKNVENYFDDIIVFSDDFEQH 657          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHG6_9PHAE4.280e-1434.23Reverse transcriptase domain-containing protein n=... [more]
A0A158P5B0_TETUR1.040e-1338.46Reverse transcriptase domain-containing protein n=... [more]
A0A158P4Q1_TETUR1.060e-1338.46RNA-directed DNA polymerase n=1 Tax=Tetranychus ur... [more]
A0A158P4S6_TETUR1.080e-1338.46RNA-directed DNA polymerase n=2 Tax=Tetranychus ur... [more]
A0A6H5J9L6_9HYME1.970e-933.33Reverse transcriptase domain-containing protein n=... [more]
A0A8J6AXG2_9EUKA2.120e-931.62Uncharacterized protein n=2 Tax=Carpediemonas memb... [more]
A0A158P5P0_TETUR1.350e-833.05Uncharacterized protein n=2 Tax=Tetranychus urtica... [more]
A0A0C2MZH8_THEKT1.390e-835.45Transposon Tf2-9 polyprotein n=1 Tax=Thelohanellus... [more]
UPI001F903E4E1.430e-833.94Uncharacterized protein n=2 Tax=Dermatophagoides f... [more]
UPI001FA239421.460e-833.94Uncharacterized protein n=1 Tax=Dermatophagoides f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35022contigH-paniculata_contig35022:1807..2172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score72.4
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog7425.NV17643-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,3CWAK@33213,3SIRK@50557,41WI3@6656,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.5327165-CDS-H-paniculata_contig35022:1806..21721622930081.5327165-CDS-H-paniculata_contig35022:1806..2172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35022 1807..2172 -
1691481138.903174-CDS-H-paniculata_contig35022:1806..21721691481138.903174-CDS-H-paniculata_contig35022:1806..2172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35022 1807..2172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35022.9326.1prot_H-paniculata_contig35022.9326.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35022 1807..2172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35022.9326.1

>prot_H-paniculata_contig35022.9326.1 ID=prot_H-paniculata_contig35022.9326.1|Name=mRNA_H-paniculata_contig35022.9326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
PLNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHK
IAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNI
PIYSQTFGEHPALISNSFRTSS
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mRNA from alignment at H-paniculata_contig35022:1807..2172-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35022.9326.1 ID=mRNA_H-paniculata_contig35022.9326.1|Name=mRNA_H-paniculata_contig35022.9326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig35022:1807..2172- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTTAATATTTTAACGAAGACCGATAGAGGGGAGTTGGGTGACATTCA GAGTATTTTCAACAAACTGAACGGCATGCGATACTTCTCATCCATCGACG TCGCATCACAATTCTCCCAGACAGAAATCGTAGAGGAAGACAAGCACAAA ATCGCTTTTCGTGATGCCCACCGTAATCGATGGGAATACAACCGATGTGG GTTTGGTGTAAAGATTCTGCCTGCGCCACTCTCACGATACATTTCAATCA TGTTGGGCGCACTCAAAGGTAACGGTGTCGAAAATTGGCTAGACAACATA CCCATCTACAGCCAAACTTTCGGAGAGCATCCCGCACTCATCAGCAATTC TTTTCGCACTTCGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig35022:1807..2172-

>mRNA_H-paniculata_contig35022.9326.1 ID=mRNA_H-paniculata_contig35022.9326.1|Name=mRNA_H-paniculata_contig35022.9326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig35022:1807..2172- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTTAATATTTTAACGAAGACCGATAGAGGGGAGTTGGGTGACATTCA
GAGTATTTTCAACAAACTGAACGGCATGCGATACTTCTCATCCATCGACG
TCGCATCACAATTCTCCCAGACAGAAATCGTAGAGGAAGACAAGCACAAA
ATCGCTTTTCGTGATGCCCACCGTAATCGATGGGAATACAACCGATGTGG
GTTTGGTGTAAAGATTCTGCCTGCGCCACTCTCACGATACATTTCAATCA
TGTTGGGCGCACTCAAAGGTAACGGTGTCGAAAATTGGCTAGACAACATA
CCCATCTACAGCCAAACTTTCGGAGAGCATCCCGCACTCATCAGCAATTC
TTTTCGCACTTCGTCGCCGCTTAATATTTTAACGAAGACCGATAGAGGGG
AGTTGGGTGACATTCAGAGTATTTTCAACAAACTGAACGGCATGCGATAC
TTCTCATCCATCGACGTCGCATCACAATTCTCCCAGACAGAAATCGTAGA
GGAAGACAAGCACAAAATCGCTTTTCGTGATGCCCACCGTAATCGATGGG
AATACAACCGATGTGGGTTTGGTGTAAAGATTCTGCCTGCGCCACTCTCA
CGATACATTTCAATCATGTTGGGCGCACTCAAAGGTAACGGTGTCGAAAA
TTGGCTAGACAACATACCCATCTACAGCCAAACTTTCGGAGAGCATCCCG
CACTCATCAGCAATTCTTTTCGCACTTCGTCG
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