mRNA_H-paniculata_contig35022.9326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 4.280e-14 Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 1 PLNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNG-VENWLDNIPIYSQTFGEH 330
PLN LT + G +G++ S+ +++ ++F+ +D+ + Q I D+ K AFRDA +++ RC FG+ +PA S + L + G +E WLD+I I+S+T EH
Sbjct: 872 PLNNLTVKNSGGIGNLASMHDRVRKSKWFTLLDLPQAYHQIPIKPSDRPKTAFRDARGRLYQFTRCSFGLTTIPAVFSALLGDTLRPTESKGGIERWLDDILIHSETLEEH 982
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A158P5B0_TETUR (Reverse transcriptase domain-containing protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P5B0_TETUR) HSP 1 Score: 76.3 bits (186), Expect = 1.040e-13 Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
LN LT D+ L I + ++L G +YFS++DV + E+ E K AF H +E+ FG+K PA R + +LG+L NG N+LD+I IYS+TF EH L+ F
Sbjct: 570 LNALTIDDKMPLPRINDVIDRLQGSKYFSTLDVKWGYWHIEMDPESIEKTAFV-THEGHYEWLVMPFGLKNAPATFQRILQRVLGSLLYNGAINYLDDIIIYSKTFSEHLQLLEKIF 685
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A158P4Q1_TETUR (RNA-directed DNA polymerase n=1 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P4Q1_TETUR) HSP 1 Score: 76.3 bits (186), Expect = 1.060e-13 Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
LN LT D+ L I + ++L G +YFS++DV + E+ E K AF H +E+ FG+K PA R + +LG+L NG N+LD+I IYS+TF EH L+ F
Sbjct: 197 LNALTIDDKMPLPRINDVIDRLQGSKYFSTLDVKWGYWHIEMDPESIEKTAFV-THEGHYEWLVMPFGLKNAPATFQRILQRVLGSLLYNGAINYLDDIIIYSKTFSEHLQLLEKIF 312
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A158P4S6_TETUR (RNA-directed DNA polymerase n=2 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P4S6_TETUR) HSP 1 Score: 76.3 bits (186), Expect = 1.080e-13 Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 1
Query: 4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
LN LT D+ L I + ++L G +YFS++DV + E+ E K AF H +E+ FG+K PA R + +LG+L NG N+LD+I IYS+TF EH L+ F
Sbjct: 570 LNALTIDDKMPLPRINDVIDRLQGSKYFSTLDVKWGYWHIEMDPESIEKTAFV-THEGHYEWLVMPFGLKNAPATFQRILQRVLGSLLYNGAINYLDDIIIYSKTFSEHLQLLEKIF 685
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A6H5J9L6_9HYME (Reverse transcriptase domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5J9L6_9HYME) HSP 1 Score: 63.9 bits (154), Expect = 1.970e-9 Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 1
Query: 4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
LN T D L +I I ++L G YFS+ D+AS+F Q + E+DK K AF + ++Y R G+K PA R + +L L+ + +LD+I +Y++ EH + + F
Sbjct: 25 LNKKTIGDAYPLPNITDIMDQLGGASYFSTFDLASEFHQIPMKEDDKWKTAFSTLN-GHFQYKRMPMGLKNAPATFQRLMDKVLRGLQNIEMLVYLDDIIVYAKDLKEHDSKVRRLF 140
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A8J6AXG2_9EUKA (Uncharacterized protein n=2 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6AXG2_9EUKA) HSP 1 Score: 63.9 bits (154), Expect = 2.120e-9 Identity = 37/117 (31.62%), Postives = 66/117 (56.41%), Query Frame = 1
Query: 4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSF 354
LN +++ R L +I+SI ++LNG +YF+++D+ S + Q + + AF H +E+ R FG+K P+ R + +L L G GVE +LD++ +++ T H +L+ F
Sbjct: 502 LNSVSRDFRFPLQNIKSILSRLNGSKYFTTLDLRSGYHQFPLDAIAVPRTAFA-THNGLYEFVRVPFGLKNAPSYFQRGMMRILAPLLGRGVECYLDDVIVHASTIEGHNSLLHQVF 617
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A158P5P0_TETUR (Uncharacterized protein n=2 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P5P0_TETUR) HSP 1 Score: 61.6 bits (148), Expect = 1.350e-8 Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 1
Query: 4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEHPALISNSFR 357
LN +T D+ L +IQ + L GM+YF+ +D+ S + Q + D+ K AF +EY R FG+ P+ R +SI+LG L N ++D++ I+S+ EH + FR
Sbjct: 457 LNEITVKDKFPLPNIQDYLDSLQGMKYFTLLDLRSGYHQMALDPSDQPKTAFVTPS-GLYEYTRLPFGLANGPSSFMRMMSIVLGGLIYNTCLIFIDDLLIFSKNEEEHLERLETIFR 573
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: A0A0C2MZH8_THEKT (Transposon Tf2-9 polyprotein n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2MZH8_THEKT) HSP 1 Score: 61.6 bits (148), Expect = 1.390e-8 Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFR-DAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEH 330
LN +TK D L I +F++LNG +YF+S+D+ S + Q + E DK K AF +E+N FG+ P+ R + +L LK +LD+I I+S+++ EH
Sbjct: 40 LNNVTKRDEYSLPSIDQLFDRLNGAKYFTSLDLYSGYWQCTLEENDKEKTAFSVGIGEGLYEFNVLPFGLCNAPSSFHRLMDSVLTPLKCCFA--YLDDILIFSKSWTEH 147
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: UPI001F903E4E (Uncharacterized protein n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F903E4E) HSP 1 Score: 61.6 bits (148), Expect = 1.430e-8 Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 1
Query: 4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEH 330
LN +T TD+ + I I +KL G +YF+ D+A+ + I ED K AF H E+ FG+K PA R I ++ + VEN+ D+I ++S F +H
Sbjct: 575 LNDVTITDKQPIPIIDDIIDKLYGKKYFTKFDIANGYWHVPIAHEDIPKTAF-STHNQHLEWLVMPFGLKNAPATFQRAIRGVIMKHQLKNVENYFDDIIVFSDDFEQH 682
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Match: UPI001FA23942 (Uncharacterized protein n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001FA23942) HSP 1 Score: 61.6 bits (148), Expect = 1.460e-8 Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 1
Query: 4 LNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKIAFRDAHRNRWEYNRCGFGVKILPAPLSRYISIMLGALKGNGVENWLDNIPIYSQTFGEH 330
LN +T TD+ + I I +KL G +YF+ D+A+ + I ED K AF H E+ FG+K PA R I ++ + VEN+ D+I ++S F +H
Sbjct: 550 LNDVTITDKQPIPIIDDIIDKLYGKKYFTKFDIANGYWHVPIAHEDIPKTAF-STHNQHLEWLVMPFGLKNAPATFQRAIRGVIMKHQLKNVENYFDDIIVFSDDFEQH 657 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35022.9326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig35022.9326.1 >prot_H-paniculata_contig35022.9326.1 ID=prot_H-paniculata_contig35022.9326.1|Name=mRNA_H-paniculata_contig35022.9326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp PLNILTKTDRGELGDIQSIFNKLNGMRYFSSIDVASQFSQTEIVEEDKHKback to top mRNA from alignment at H-paniculata_contig35022:1807..2172- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig35022.9326.1 ID=mRNA_H-paniculata_contig35022.9326.1|Name=mRNA_H-paniculata_contig35022.9326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig35022:1807..2172- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig35022:1807..2172- >mRNA_H-paniculata_contig35022.9326.1 ID=mRNA_H-paniculata_contig35022.9326.1|Name=mRNA_H-paniculata_contig35022.9326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig35022:1807..2172- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |