mRNA_H-paniculata_contig3502.9325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3502.9325.1
Unique NamemRNA_H-paniculata_contig3502.9325.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3502.9325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3502contigH-paniculata_contig3502:15383..16204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.3316836-CDS-H-paniculata_contig3502:15382..155391622930081.3316836-CDS-H-paniculata_contig3502:15382..15539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3502 15383..15539 +
1691481138.8237746-CDS-H-paniculata_contig3502:15382..155391691481138.8237746-CDS-H-paniculata_contig3502:15382..15539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3502 15383..15539 +
1622930081.3495042-CDS-H-paniculata_contig3502:16132..162031622930081.3495042-CDS-H-paniculata_contig3502:16132..16203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3502 16133..16203 +
1691481138.833048-CDS-H-paniculata_contig3502:16132..162031691481138.833048-CDS-H-paniculata_contig3502:16132..16203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3502 16133..16203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3502.9325.1prot_H-paniculata_contig3502.9325.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3502 15383..16203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3502.9325.1

>prot_H-paniculata_contig3502.9325.1 ID=prot_H-paniculata_contig3502.9325.1|Name=mRNA_H-paniculata_contig3502.9325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
VLSTASRDLAFSTRASHRLKDSFGVKMAWVIKKGSGSGNGERKDISRASE
SPDIHAKGATSQAMRRNTWREFGVNE
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mRNA from alignment at H-paniculata_contig3502:15383..16204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3502.9325.1 ID=mRNA_H-paniculata_contig3502.9325.1|Name=mRNA_H-paniculata_contig3502.9325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=822bp|location=Sequence derived from alignment at H-paniculata_contig3502:15383..16204+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTGTCAACAGCGTCTCGAGACTTGGCATTCAGCACCAGAGCATCGCA
CCGACTAAAGGATAGCTTCGGAGTTAAGATGGCTTGGGTGATAAAGAAGG
GGAGTGGCAGTGGTAACGGGGAGAGGAAGGACATCAGTCGAGCATCTGAG
TCCCCCGGTACGTTTCGATCTCTCTCCAGACAGCGAGCTGTAGCCGAAAT
GTGCTTAGTGTCGAGGGAGGCACGCATGGTACTGCTCTGCCTGTGGAGAG
GCAGGGTACTGCCCCAAAATAGCCGCAATGGCGGTACCAAACGGAACTTA
TGATATACGTAGGGCGCCCACTGGCTCCTTCTTATGTTCTGTTGCCAACT
TGTTATTTATATCACCCAGACTGCTTCTGCGTGATACTCTGCACGCAAAA
TACAACAGACGGTATTTTCTAGAGTGGTATTTAGTTGTACAGGCTACACG
TTAAAAAAAGTAGTCTAGCCGCAACCGCATAATGAGGGGTGGATGCGGAA
TGGATATGACGGGGAACACCTGATCCCACGGCCCTCGATCGCGACTGTAG
TACATAACCTTGATAAAGCGCATGATTCACAACCTACGCCTCTTCTTGAA
GTTGAGTTAAGTTGTTGCCAGCCATGCCGATTGCTGCTGTATTCATTACT
TTGGCCGTTGTATCGGTTCACAGTTAGATCTATTGACAATGTCTGCTGAC
CTGATTGCCTGTATTATTGACTAGTGTAATGTGTTGTCTGGGTCACGCAG
ATATACACGCAAAAGGTGCGACGTCGCAAGCGATGAGACGCAACACATGG
CGCGAGTTCGGGGTCAATGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3502:15383..16204+

>mRNA_H-paniculata_contig3502.9325.1 ID=mRNA_H-paniculata_contig3502.9325.1|Name=mRNA_H-paniculata_contig3502.9325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig3502:15383..16204+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTGTCAACAGCGTCTCGAGACTTGGCATTCAGCACCAGAGCATCGCA
CCGACTAAAGGATAGCTTCGGAGTTAAGATGGCTTGGGTGATAAAGAAGG
GGAGTGGCAGTGGTAACGGGGAGAGGAAGGACATCAGTCGAGCATCTGAG
TCCCCCGGTGTTGTCAACAGCGTCTCGAGACTTGGCATTCAGCACCAGAG
CATCGCACCGACTAAAGGATAGCTTCGGAGTTAAGATGGCTTGGGTGATA
AAGAAGGGGAGTGGCAGTGGTAACGGGGAGAGGAAGGACATCAGTCGAGC
ATCTGAGTCCCCCGATATACACGCAAAAGGTGCGACGTCGCAAGCGATGA
GACGCAACACATGGCGCGAGTTCGGGGTCAATGAGATATACACGCAAAAG
GTGCGACGTCGCAAGCGATGAGACGCAACACATGGCGCGAGTTCGGGGTC
AATGAG
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