mRNA_H-paniculata_contig35019.9323.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig35019.9323.1
Unique NamemRNA_H-paniculata_contig35019.9323.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig35019.9323.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.700e-30
Identity = 77/167 (46.11%), Postives = 103/167 (61.68%), Query Frame = 1 
Query:    1 LLQYKGMRAGRISQNAVNHLRYNADMVMLAHNDPVDGAGFTCNKRVLVDDPNGNNSGPVRAPLPLMCDIPVESAKTDIPPRCCLFLVNRYSNIGDTVISLGAESNQIMETALDRARKVEVFLGSSDGAREEVARRAETAFLAAYKEGKFQASSSPANEVLIRHGILP 501
            +L Y     GR    A NHL+ + DMV+L HN+   GA FTCNKRV VDDP G  S      + LM D+  E A TDI  R   FL+NRY++ GDTV SL AE + ++E AL+R+R+VEVF+ + +  +EEV +    +F  AYK GK++AS+S A E +I    LP
Sbjct:  428 MLNYSKRVGGRPPIRAENHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSD-ASPSMQLMTDVEYEGAATDIVMRPLHFLINRYTHAGDTVASLSAERHNVVEAALERSRRVEVFVANPNS-KEEVRKNLLASFSRAYKAGKWKASTSLAQERVISPSCLP 589
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BLAST of mRNA_H-paniculata_contig35019.9323.1 vs. uniprot
Match: A0A6H5JTW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW8_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.840e-21
Identity = 66/161 (40.99%), Postives = 85/161 (52.80%), Query Frame = 1 
Query:    4 LQYKGMRAGRISQNAVNHLRYNADMVMLAH-------NDPVDGAGFTCNKRVLVDDPNGNNSGPVRAPLPLMC-----DIPVESAKTDIPPRCCLFLVNRYSNIGDTVISLGAESNQIMETALDRARKVEVFLGSSDGAREEVARRAETAFLAAYKEGKFQ 450
            L Y    AGR +  A  HL+++ D VML H       N P DG  FT N++V  DD  GN++    A +   C     DI       D P +  +FLVNRYS  GDTV+  GAE N  +ETA+ R RKVE F+ S + A + V  R E AF  AY +G F+
Sbjct:   12 LVYSSTGAGRPASAANGHLKFSQDAVMLVHLTSFSSSNSPTDG--FTVNEKVTTDDLYGNSTA---ASVTSQCSSILTDIQHPGKGVDWPTKALMFLVNRYSRQGDTVLLFGAEHNTGVETAISRGRKVEAFVASPEAAAK-VEARTEIAFQTAYAQGIFK 166
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BLAST of mRNA_H-paniculata_contig35019.9323.1 vs. uniprot
Match: A0A6H5JEK0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK0_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.270e-19
Identity = 68/164 (41.46%), Postives = 87/164 (53.05%), Query Frame = 1 
Query:    4 LQYKGMRAGRISQNAVNHLRYNADMVMLAH-------NDPVDGAGFTCNKRVLVDDPNGNNSGPVRAPLPLMCDIPVESAKTDIP--------PRCCLFLVNRYSNIGDTVISLGAESNQIMETALDRARKVEVFLGSSDGAREEVARRAETAFLAAYKEGKFQ 450
            L Y   RAGR +  A  HL+++ D VML H       N P DG  FT N++V  DD  GN++    A +   C     S  TDI         P+  +FLVNRYS  GDTV+  GAE N  +ETA+ R RKVE F+ S + A  +V  R E AF  AY +G F+
Sbjct:  514 LVYSSPRAGRPASAANGHLKFSQDAVMLVHLTSFSSSNSPTDG--FTVNEKVTTDDLYGNSTA---ASVTSQCS----SILTDIQHPGKGVDWPKALMFLVNRYSRQGDTVLLFGAEHNTRVETAITRGRKVEAFVASPEAA-VKVEARTEIAFQTAYAQGIFK 667
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BLAST of mRNA_H-paniculata_contig35019.9323.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.090e-12
Identity = 55/158 (34.81%), Postives = 75/158 (47.47%), Query Frame = 1 
Query:   79 VMLAHNDPVDGAG--FTCNKRVLVDDPNGNNSGPV------------RAPLPLMCDIPVESAKTDIPPRCCLFLVNRYSNIGDTVISLGAESNQIMETALDRARKVEVFLGSSD--GAREEVARRAETAFLAAYKEGKFQASSSPANEVLIRHGILPD 504
            ++  HN   DG G  FTCN  V      G  S               R P PLM D+P +            F + R++  GDTV+S+ AES+ ++E AL+  RKVE FL +S+  GA   V  R E A+  A+++G F    S +    I HG LPD
Sbjct:  243 IVAHHNGCGDGGGMNFTCNDTVTPQSFTGRRSAGSSDGSTWSTASGRRIPSPLMGDVPRKGVTRGYHDNVVQFAIQRWTKAGDTVVSMHAESDGVVECALNLGRKVEAFLVASEHHGA---VTTRVEEAWEGAWRKGLFTDDGSASEITYISHGSLPD 397
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BLAST of mRNA_H-paniculata_contig35019.9323.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.950e-11
Identity = 54/158 (34.18%), Postives = 76/158 (48.10%), Query Frame = 1 
Query:   79 VMLAHNDPVDGAG--FTCNKRVLVDD-----PNGNNSGPV-------RAPLPLMCDIPVESAKTDIPPRCCLFLVNRYSNIGDTVISLGAESNQIMETALDRARKVEVFLGSSD--GAREEVARRAETAFLAAYKEGKFQASSSPANEVLIRHGILPD 504
            ++  HN   DG G  FTCN  V           G++ G         R P PLM D+P +            F + R++  GDTV+S+ AES+ ++E AL+  RKVE FL +S+  GA   V  R E A+  A+++G F      +    I HG LPD
Sbjct:  744 IVAHHNASGDGGGMNFTCNDTVTPQSFTGKLSAGSSDGSTWSTASGRRIPSPLMGDVPHKGVTRGYHDNVVQFAIQRWTKAGDTVVSMHAESDGVVEGALNLGRKVEAFLVASEHHGA---VTTRVEEAWEGAWRKGLFTDDGDASEITYISHGSLPD 898
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig35019.9323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE1.700e-3046.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTW8_9PHAE1.840e-2140.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEK0_9PHAE2.270e-1941.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FZ29_ECTSI2.090e-1234.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK41_9PHAE1.950e-1134.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig35019contigH-paniculata_contig35019:588..1828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size504
Cds size486
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig35019.9323.1prot_H-paniculata_contig35019.9323.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig35019 606..1828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.2186062-UTR-H-paniculata_contig35019:587..6051622930081.2186062-UTR-H-paniculata_contig35019:587..605Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35019 588..605 +
1691481138.7869987-UTR-H-paniculata_contig35019:587..6051691481138.7869987-UTR-H-paniculata_contig35019:587..605Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig35019 588..605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.23727-CDS-H-paniculata_contig35019:605..8531622930081.23727-CDS-H-paniculata_contig35019:605..853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35019 606..853 +
1691481138.7983057-CDS-H-paniculata_contig35019:605..8531691481138.7983057-CDS-H-paniculata_contig35019:605..853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35019 606..853 +
1622930081.2552853-CDS-H-paniculata_contig35019:1200..13841622930081.2552853-CDS-H-paniculata_contig35019:1200..1384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35019 1201..1384 +
1691481138.805941-CDS-H-paniculata_contig35019:1200..13841691481138.805941-CDS-H-paniculata_contig35019:1200..1384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35019 1201..1384 +
1622930081.2687528-CDS-H-paniculata_contig35019:1774..18281622930081.2687528-CDS-H-paniculata_contig35019:1774..1828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35019 1775..1828 +
1691481138.8145325-CDS-H-paniculata_contig35019:1774..18281691481138.8145325-CDS-H-paniculata_contig35019:1774..1828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig35019 1775..1828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig35019.9323.1

>prot_H-paniculata_contig35019.9323.1 ID=prot_H-paniculata_contig35019.9323.1|Name=mRNA_H-paniculata_contig35019.9323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MRAGRISQNAVNHLRYNADMVMLAHNDPVDGAGFTCNKRVLVDDPNGNNS
GPVRAPLPLMCDIPVESAKTDIPPRCCLFLVNRYSNIGDTVISLGAESNQ
IMETALDRARKVEVFLGSSDGAREEVARRAETAFLAAYKEGKFQASSSPA
NEVLIRHGILPD
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mRNA from alignment at H-paniculata_contig35019:588..1828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig35019.9323.1 ID=mRNA_H-paniculata_contig35019.9323.1|Name=mRNA_H-paniculata_contig35019.9323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1241bp|location=Sequence derived from alignment at H-paniculata_contig35019:588..1828+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCATATCGCAGAATGCTGT
CAATCATCTACGTTACAATGCAGACATGGTGATGTTGGCACACAACGACC
CGGTTGACGGGGCAGGCTTCACGTGCAACAAGCGTGTACTGGTGGATGAT
CCCAACGGCAACAACAGCGGTCCCGTCAGAGCACCCCTCCCATTGATGTG
CGACATACCTGTGGAGAGTGCCAAGACAGATATACCACCCAGGTGTTGCC
TGTTCCTCGTTAACAGGTGAAAATAGTTGTTACTACTTAAGCAGGGTTGT
GGTTCATGTTTGCACATTCCTCATTTGAAGGCTGCATGTTTTTCTCTCCT
ATGTGGTTGTTGTTATTGGAGCGTTCTACAACCATCACGAGCATAATAGT
AAGTAACTAGAGAACTGATGTTGGGGGTTCATTGTAACCATCTAAAATAA
GCCTTGTGTTGACACGCCGTACAGACACCACCACGAGATACCTGCTATAT
GACAACGAGGTGTACTGGTTAGGCCTTGGTCATGTACTTGGCAAAAATCC
CTTCTTTTTGCCAACTTATCGTCAGTACTACTGATAATGCCTTGTTCCTA
TTTGGTATGGCAGGTACTCCAACATAGGAGATACAGTCATATCGCTGGGC
GCTGAGAGTAATCAAATTATGGAGACGGCGCTTGATCGTGCGAGAAAGGT
TGAGGTCTTCCTGGGTTCTTCTGATGGTGCGCGAGAAGAGGTTGCAAGGC
GAGCAGAAACGGCGTTCTTGGCGGCTTACAAGGAGGGGAAATTCCAGGTC
AGTACAGAGTCTAAGATTGTCCAATGTTTGGGGTTGTGTTGTGTGCGACA
GTCATGGACATCTACAAATAAATGTGTTGCGCAAGCACTATCACTATCTG
CAGTACCAAACAGTTGAGCCAGTAATGAAAACTTTGTCAATGCCGATTGA
CAGAGATGCCTTCTTAGTAGTAGTGGCACCCGAAGAAAGCCACTTAAAGC
TTGGACAATAGAGCGTATTAATGAACGGAAGCCGAATTGTTGTTTAGTTG
ACATTGATGCGTGTTGACAAGCTGTTTTGTTCGCGCTGCCGTTTCTTGAT
GATGCAGACACTTTTTATTATGCTGTGTATAAATACGTACGTTGACTACT
ATGTATTATATTCCCCCATGCTCCCCTTGTCATACAGGCATCATCATCCC
CGGCCAATGAGGTTCTCATTCGCCATGGTATTCTACCGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig35019:588..1828+

>mRNA_H-paniculata_contig35019.9323.1 ID=mRNA_H-paniculata_contig35019.9323.1|Name=mRNA_H-paniculata_contig35019.9323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig35019:588..1828+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCCGGGCGCATATCGCAGAATGCTGTCAATCATCTACGTTACAA
TGCAGACATGGTGATGTTGGCACACAACGACCCGGTTGACGGGGCAGGCT
TCACGTGCAACAAGCGTGTACTGGTGGATGATCCCAACGGCAACAACAGC
GGTCCCGTCAGAGCACCCCTCCCATTGATGTGCGACATACCTGTGGAGAG
TGCCAAGACAGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGAT
GAGGGCCGGGCGCATATCGCAGAATGCTGTCAATCATCTACGTTACAATG
CAGACATGGTGATGTTGGCACACAACGACCCGGTTGACGGGGCAGGCTTC
ACGTGCAACAAGCGTGTACTGGTGGATGATCCCAACGGCAACAACAGCGG
TCCCGTCAGAGCACCCCTCCCATTGATGTGCGACATACCTGTGGAGAGTG
CCAAGACAGATATACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGGTAC
TCCAACATAGGAGATACAGTCATATCGCTGGGCGCTGAGAGTAATCAAAT
TATGGAGACGGCGCTTGATCGTGCGAGAAAGGTTGAGGTCTTCCTGGGTT
CTTCTGATGGTGCGCGAGAAGAGGTTGCAAGGCGAGCAGAAACGGCGTTC
TTGGCGGCTTACAAGGAGGGGAAATTCCAGGTACTCCAACATAGGAGATA
CAGTCATATCGCTGGGCGCTGAGAGTAATCAAATTATGGAGACGGCGCTT
GATCGTGCGAGAAAGGTTGAGGTCTTCCTGGGTTCTTCTGATGGTGCGCG
AGAAGAGGTTGCAAGGCGAGCAGAAACGGCGTTCTTGGCGGCTTACAAGG
AGGGGAAATTCCAGGCATCATCATCCCCGGCCAATGAGGTTCTCATTCGC
CATGGTATTCTACCGGATGCATCATCATCCCCGGCCAATGAGGTTCTCAT
TCGCCATGGTATTCTACCGGAT
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