mRNA_H-paniculata_contig350.9319.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig350.9319.1
Unique NamemRNA_H-paniculata_contig350.9319.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: A0A6J1WBU8_9SAUR (ankyrin repeat and SOCS box protein 10 n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1WBU8_9SAUR)

HSP 1 Score: 67.4 bits (163), Expect = 4.640e-10
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   43 KLLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAA-----AAGVGSKCGDMVRELIAAGARVDTVEDKTRNSPLHVASDLGNNDVVERLLRGGA 378
            +LLLR+GA V+    + G T LH AARLG     +  L+ GAD+E R+ +G TPLLAA     +A       ++ +EL+ AGARV+   D+    PLH A    N  VV  LL  GA
Sbjct:    3 RLLLRHGAPVNCASEEEGDTPLHVAARLGLPEHLRLFLSHGADLEARNAEGETPLLAACALPHSAQAAEPYYEVCKELVEAGARVNAA-DRDLQRPLHQACKQANPRVVALLLAHGA 118          
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: UPI000D6A0F60 (ankyrin repeat and SOCS box protein 10-like n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A0F60)

HSP 1 Score: 62.8 bits (151), Expect = 3.370e-8
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   22 KGHVNIVK----LLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAA-----AAGVGSKCGDMVRELIAAGARVDTVEDKTRNSPLHVASDLGNNDVVERLLRGGADL 384
            +G ++I K    LLL +GA+V+ V  +   T LH AARLG V   +  L+ GAD+E ++ +G TPL+AA     +A       D+ R+L+ AGA         R  PLH A    N+ VV  LL  GA++
Sbjct:   96 EGRLSITKRCARLLLSHGAVVNCVSEEEEDTPLHVAARLGLVEHVRLFLSYGADLEAKNAEGQTPLIAACTLAHSAQAADDYYDVCRQLVQAGAXXXXXX-XXRQRPLHQACKSANHRVVALLLARGANV 224          
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: A0A8J1UFM0_OWEFU (Ofus.G14921 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UFM0_OWEFU)

HSP 1 Score: 62.4 bits (150), Expect = 5.780e-8
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 PLIRAVLKGHVNIVKLLL-RNGAMVDAVYPKTGG--TALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAAAAGVGSKCGDMVRELIAAGARVDTVEDKTRNSPLHVASDLGNNDVVERLLRGGADLAGKNAVG 405
            P+++AV KG +  +K L+ +    VD+ Y   G   + +H+A   G     KYLL+ GAD  KRD  G T L  AA   G     ++ +L+  GA +D +      +PL+VA   G  ++VE LL  GAD+  KN  G
Sbjct:   45 PILKAVQKGDLEKLKTLIEKENINVDSDYFLEGNWISPIHQAVICGHPNILKYLLSKGADPNKRDSSGTTALHHAAK-YGFDMEPVITDLLTHGAEIDAIGMHEGVTPLYVAYQGGYKEIVELLLSKGADINSKNGNG 181          
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: A0A2U1L9Z0_ARTAN (Ankyrin repeat family protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1L9Z0_ARTAN)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-6
Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = 1
Query:   25 GHVNIVKLLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAAAAGVGSKCGDMVRELIAAGARVDTVEDKTRNSPLHVASDLGNNDVVERLLRGGAD 381
            GH+ +++LLL  G  VD       GT L  AA   Q    K LL   AD       G TPLL+  A     C ++   LI AGA V+        +PLHVA+D+GN +++ RL++  AD
Sbjct:  133 GHIELMELLLSVGVDVDVDSQSDSGTPLVWAAGHAQQEAVKLLLKHKADPNIETDDGVTPLLSTVAAGSLPCLEL---LIEAGANVNITAGGA--TPLHVAADIGNTELITRLIKAKAD 246          
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: UPI001C718436 (ankyrin-3-like n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C718436)

HSP 1 Score: 57.8 bits (138), Expect = 2.240e-6
Identity = 46/135 (34.07%), Postives = 63/135 (46.67%), Query Frame = 1
Query:    1 PLIRAVLKGHVNIVKLLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAAAAGVGSKCGDMVRELIAAGARVDTVEDKTRNSPLHVASDLGNNDVVERLLRGGADLAGKNAVG 405
            PL  A  KGH+ IVK+LLRNGA   A     G    H A+R G+    ++  + G D  + D  G T L  AA    +   D+V  L+  GA +   +  T   P+H AS  G   VV+  L  G  +   N +G
Sbjct:   82 PLHYAAEKGHLEIVKILLRNGANASAETYYMGSKYCHIASRFGRRNILEFFFSEGGDANETDKNGWTLLHCAAL---NNDVDIVEYLVNNGANIHAKDINTGTKPIHTASKNGCEKVVDYFLLKGVGVDTINKLG 213          
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: W3X919_PESFW (Sec5 domain-containing protein n=1 Tax=Pestalotiopsis fici (strain W106-1 / CGMCC3.15140) TaxID=1229662 RepID=W3X919_PESFW)

HSP 1 Score: 57.8 bits (138), Expect = 2.480e-6
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   28 HVNIVKLLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAAAAGVGSKCGDMVRELIAAGARVDT------VEDKT-RNSPLHVASDLGNNDVVERLLRGGADL 384
            HV ++  LL  GA +       G T LH+AAR+G + G ++LL +  ++E R+  G TPL+ A   + +   ++V+ L+  G+ V+       V D T   SPL  A ++GN D++++LL  GA +
Sbjct:  265 HVGVLNHLLGRGADLHIQLLTDGDTLLHDAARMGNLKGVRFLLDNQLNIESRNKLGKTPLMRA---ISANQVEVVKLLLDRGSDVNARGELVKVSDFTVSTSPLTEAIEIGNLDILQQLLAKGATI 387          
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: UPI001C71B740 (uncharacterized protein LOC107454385 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C71B740)

HSP 1 Score: 57.4 bits (137), Expect = 3.390e-6
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 1
Query:    1 PLIRAVLKGHVNIVKLLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAAAAGVGSKCGDMVRELIAAGARVDTVEDKTRNSPLHVASDLGNNDVVERLLRGGA 378
            PL  A  KGH+ IVK+L+RNGA   A     G    H A+R G+    ++  + G D  + D  G T L  AA    +   D+V  L+  GA +   +  T   P+H+AS+ G   VV+  L  GA
Sbjct: 1278 PLHYAAEKGHLEIVKILIRNGANASAGGGGIGSKYCHFASRFGRRNILEFFFSEGGDANETDEIGWTLLHYAAV---NNDVDIVEYLVDNGANIHAEQFATGMKPMHIASEYGCEKVVDYFLLKGA 1400          
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: A0A2K0UCP2_GIBNY (Uncharacterized protein n=1 Tax=Gibberella nygamai TaxID=42673 RepID=A0A2K0UCP2_GIBNY)

HSP 1 Score: 57.0 bits (136), Expect = 4.550e-6
Identity = 49/127 (38.58%), Postives = 63/127 (49.61%), Query Frame = 1
Query:    1 PLIRAVLKGHVNIVKLLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAAAAGVGSKCGDMVRE-----LIAAGARVDTVEDKTRNSPLHVASDLGNNDVVERLL 366
            PL  AV  G     +LLL+  A  DA   + G T LH A  +        LL  GAD  ++DG+G TPLLAA  G   +  D VRE     L+ AGAR D       N+PLH A   GN +++  +L
Sbjct: 1346 PLALAVELGQYKTAELLLQRKAAPDADLGEMG-TVLHLAVEMKGRDMVDLLLREGADPNRKDGKGRTPLLAALDGEIIEH-DPVREAIVEGLLNAGARPDEGNTDNTNAPLHAALQSGNPNIISTIL 1470          
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: A0A1I8JKX1_9PLAT (ANK_REP_REGION domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8JKX1_9PLAT)

HSP 1 Score: 56.6 bits (135), Expect = 5.610e-6
Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    4 LIRAVLKGHVNIVKLLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAAAAGVGSKCGDMVRELIAAGARVDTVEDKTRNSPLHVASDLGNNDVVERLLRGG 375
            LI AV +G++     +LRN         ++G TAL  A + G V    +L+ +GA V+++D +G TPL  AA+   S+C  ++ EL AA A  +       NSP+H+A++ G+++V+  LL GG
Sbjct:    6 LIEAVKRGNLKDTCQILRNQRCGIDCADESGKTALQWATKYGHVTIVWHLIKAGAQVDRQDLKGWTPLHEAASFGRSQCACLLMELGAA-ANPNLRTAGEGNSPVHLAAEKGHSEVLRWLLSGG 128          
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Match: A0A1I8IM83_9PLAT (ANK_REP_REGION domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IM83_9PLAT)

HSP 1 Score: 56.6 bits (135), Expect = 5.660e-6
Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    4 LIRAVLKGHVNIVKLLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKYLLTSGADVEKRDGQGHTPLLAAAAGVGSKCGDMVRELIAAGARVDTVEDKTRNSPLHVASDLGNNDVVERLLRGG 375
            LI AV +G++     +LRN         ++G TAL  A + G V    +L+ +GA V+++D +G TPL  AA+   S+C  ++ EL AA A  +       NSP+H+A++ G+++V+  LL GG
Sbjct:   10 LIEAVKRGNLKDTCQILRNQRCGIDCADESGKTALQWATKYGHVTIVWHLIKAGAQVDRQDLKGWTPLHEAASFGRSQCACLLMELGAA-ANPNLRTAGEGNSPVHLAAEKGHSEVLRWLLSGG 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig350.9319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J1WBU8_9SAUR4.640e-1041.88ankyrin repeat and SOCS box protein 10 n=1 Tax=Not... [more]
UPI000D6A0F603.370e-837.69ankyrin repeat and SOCS box protein 10-like n=1 Ta... [more]
A0A8J1UFM0_OWEFU5.780e-835.51Ofus.G14921 protein n=1 Tax=Owenia fusiformis TaxI... [more]
A0A2U1L9Z0_ARTAN1.070e-636.97Ankyrin repeat family protein n=2 Tax=Artemisia an... [more]
UPI001C7184362.240e-634.07ankyrin-3-like n=1 Tax=Parasteatoda tepidariorum T... [more]
W3X919_PESFW2.480e-633.33Sec5 domain-containing protein n=1 Tax=Pestalotiop... [more]
UPI001C71B7403.390e-634.92uncharacterized protein LOC107454385 n=1 Tax=Paras... [more]
A0A2K0UCP2_GIBNY4.550e-638.58Uncharacterized protein n=1 Tax=Gibberella nygamai... [more]
A0A1I8JKX1_9PLAT5.610e-635.48ANK_REP_REGION domain-containing protein n=1 Tax=M... [more]
A0A1I8IM83_9PLAT5.660e-635.48ANK_REP_REGION domain-containing protein n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig350contigH-paniculata_contig350:38015..38602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score62.8
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog482537.XP_008564189.1
Preferred nameASB10
KEGG koko:K10332
Hectar predicted targeting categorymitochondrion
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031625,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.Ankyrin repeat and SOCS box
EggNOG OGs35A5U@314146,38GZ5@33154,3BK6Z@33208,3CUYM@33213,3JBTQ@40674,480JD@7711,48VWX@7742,COG0666@1,KOG0504@2759
COG Functional cat.S
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.7923207-CDS-H-paniculata_contig350:38014..386021622930080.7923207-CDS-H-paniculata_contig350:38014..38602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 38015..38602 -
1691481138.6527436-CDS-H-paniculata_contig350:38014..386021691481138.6527436-CDS-H-paniculata_contig350:38014..38602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 38015..38602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig350.9319.1prot_H-paniculata_contig350.9319.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig350 38015..38602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig350.9319.1

>prot_H-paniculata_contig350.9319.1 ID=prot_H-paniculata_contig350.9319.1|Name=mRNA_H-paniculata_contig350.9319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
PLIRAVLKGHVNIVKLLLRNGAMVDAVYPKTGGTALHEAARLGQVLGAKY
LLTSGADVEKRDGQGHTPLLAAAAGVGSKCGDMVRELIAAGARVDTVEDK
TRNSPLHVASDLGNNDVVERLLRGGADLAGKNAVGQIPLHLAAGKGHQEV
VSQLLRAGAEPNVQDRIGRTPLYIAAVHGKASVIGELARAGADMAA
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mRNA from alignment at H-paniculata_contig350:38015..38602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig350.9319.1 ID=mRNA_H-paniculata_contig350.9319.1|Name=mRNA_H-paniculata_contig350.9319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at H-paniculata_contig350:38015..38602- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTGATACGCGCAGTGCTGAAAGGACACGTGAACATAGTCAAACTACT CCTCAGGAACGGTGCTATGGTGGACGCCGTGTACCCAAAAACGGGAGGGA CGGCCCTGCACGAGGCAGCCAGGCTCGGCCAAGTCCTTGGCGCAAAATAT CTGCTGACTTCGGGTGCAGATGTTGAAAAGCGGGATGGACAGGGTCATAC CCCGTTGCTGGCCGCCGCAGCCGGGGTCGGATCCAAGTGTGGGGACATGG TGAGAGAGCTAATCGCCGCGGGTGCGCGTGTAGACACTGTAGAGGACAAG ACACGAAACAGTCCTCTACACGTCGCGTCTGATCTCGGAAACAACGACGT CGTGGAGCGCCTTCTGAGGGGAGGAGCAGATCTGGCGGGGAAAAATGCGG TCGGCCAAATCCCGCTCCACCTTGCCGCCGGCAAGGGCCACCAAGAGGTC GTCAGTCAGCTACTGCGAGCCGGGGCGGAACCCAACGTGCAAGATAGAAT CGGACGCACACCATTGTACATCGCTGCCGTCCACGGCAAAGCGAGCGTTA TCGGAGAATTGGCGCGGGCAGGGGCAGACATGGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig350:38015..38602-

>mRNA_H-paniculata_contig350.9319.1 ID=mRNA_H-paniculata_contig350.9319.1|Name=mRNA_H-paniculata_contig350.9319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig350:38015..38602- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTGATACGCGCAGTGCTGAAAGGACACGTGAACATAGTCAAACTACT
CCTCAGGAACGGTGCTATGGTGGACGCCGTGTACCCAAAAACGGGAGGGA
CGGCCCTGCACGAGGCAGCCAGGCTCGGCCAAGTCCTTGGCGCAAAATAT
CTGCTGACTTCGGGTGCAGATGTTGAAAAGCGGGATGGACAGGGTCATAC
CCCGTTGCTGGCCGCCGCAGCCGGGGTCGGATCCAAGTGTGGGGACATGG
TGAGAGAGCTAATCGCCGCGGGTGCGCGTGTAGACACTGTAGAGGACAAG
ACACGAAACAGTCCTCTACACGTCGCGTCTGATCTCGGAAACAACGACGT
CGTGGAGCGCCTTCTGAGGGGAGGAGCAGATCTGGCGGGGAAAAATGCGG
TCGGCCAAATCCCGCTCCACCTTGCCGCCGGCAAGGGCCACCAAGAGGTC
GTCAGTCAGCTACTGCGAGCCGGGGCGGAACCCAACGTGCAAGATAGAAT
CGGACGCACACCATTGTACATCGCTGCCGTCCACGGCAAAGCGAGCGTTA
TCGGAGAATTGGCGCGGGCAGGGGCAGACATGGCGGCGCCTCTGATACGC
GCAGTGCTGAAAGGACACGTGAACATAGTCAAACTACTCCTCAGGAACGG
TGCTATGGTGGACGCCGTGTACCCAAAAACGGGAGGGACGGCCCTGCACG
AGGCAGCCAGGCTCGGCCAAGTCCTTGGCGCAAAATATCTGCTGACTTCG
GGTGCAGATGTTGAAAAGCGGGATGGACAGGGTCATACCCCGTTGCTGGC
CGCCGCAGCCGGGGTCGGATCCAAGTGTGGGGACATGGTGAGAGAGCTAA
TCGCCGCGGGTGCGCGTGTAGACACTGTAGAGGACAAGACACGAAACAGT
CCTCTACACGTCGCGTCTGATCTCGGAAACAACGACGTCGTGGAGCGCCT
TCTGAGGGGAGGAGCAGATCTGGCGGGGAAAAATGCGGTCGGCCAAATCC
CGCTCCACCTTGCCGCCGGCAAGGGCCACCAAGAGGTCGTCAGTCAGCTA
CTGCGAGCCGGGGCGGAACCCAACGTGCAAGATAGAATCGGACGCACACC
ATTGTACATCGCTGCCGTCCACGGCAAAGCGAGCGTTATCGGAGAATTGG
CGCGGGCAGGGGCAGACATGGCGGCG
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