mRNA_H-paniculata_contig350.9318.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig350.9318.1
Unique NamemRNA_H-paniculata_contig350.9318.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig350.9318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig350contigH-paniculata_contig350:31270..37824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size571
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig350.9318.1prot_H-paniculata_contig350.9318.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig350 31332..37735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.2447605-UTR-H-paniculata_contig350:31269..313311622930080.2447605-UTR-H-paniculata_contig350:31269..31331Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig350 31270..31331 -
1691481138.452934-UTR-H-paniculata_contig350:31269..313311691481138.452934-UTR-H-paniculata_contig350:31269..31331Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig350 31270..31331 -
1622930080.320873-UTR-H-paniculata_contig350:37735..378241622930080.320873-UTR-H-paniculata_contig350:37735..37824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig350 37736..37824 -
1691481138.4988952-UTR-H-paniculata_contig350:37735..378241691481138.4988952-UTR-H-paniculata_contig350:37735..37824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig350 37736..37824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.2601056-CDS-H-paniculata_contig350:31331..313501622930080.2601056-CDS-H-paniculata_contig350:31331..31350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 31332..31350 -
1691481138.4614992-CDS-H-paniculata_contig350:31331..313501691481138.4614992-CDS-H-paniculata_contig350:31331..31350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 31332..31350 -
1622930080.274788-CDS-H-paniculata_contig350:32702..329641622930080.274788-CDS-H-paniculata_contig350:32702..32964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 32703..32964 -
1691481138.4692292-CDS-H-paniculata_contig350:32702..329641691481138.4692292-CDS-H-paniculata_contig350:32702..32964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 32703..32964 -
1622930080.2886431-CDS-H-paniculata_contig350:34415..344911622930080.2886431-CDS-H-paniculata_contig350:34415..34491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 34416..34491 -
1691481138.4769313-CDS-H-paniculata_contig350:34415..344911691481138.4769313-CDS-H-paniculata_contig350:34415..34491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 34416..34491 -
1622930080.30498-CDS-H-paniculata_contig350:37672..377351622930080.30498-CDS-H-paniculata_contig350:37672..37735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 37673..37735 -
1691481138.4843981-CDS-H-paniculata_contig350:37672..377351691481138.4843981-CDS-H-paniculata_contig350:37672..37735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig350 37673..37735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig350.9318.1

>prot_H-paniculata_contig350.9318.1 ID=prot_H-paniculata_contig350.9318.1|Name=mRNA_H-paniculata_contig350.9318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MLLEAGADENILNGAGFYPKEVVGTRRRIGEENPQEDTRIAHMLKHGYIY
KSNAWLWAVVVPRSASLGYSSRREKRGLYKDAFTTAAPSSGSPKRFSKRA
RAPFKVQLALFRHENSNVKRKLPLLAMVVCTMSKYASKS*
back to top

mRNA from alignment at H-paniculata_contig350:31270..37824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig350.9318.1 ID=mRNA_H-paniculata_contig350.9318.1|Name=mRNA_H-paniculata_contig350.9318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6555bp|location=Sequence derived from alignment at H-paniculata_contig350:31270..37824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATTGCCGGGTTCGAAGTTCATCGCCCGCACGGGCACCTCGCCAATC
CACTGCGCCGCCGCTTACGGTCGCCTGGGAGCCACTAGAATGTTGCTCGA
AGCTGGAGCAGACGAAAATATTTTGAATGGTGCTGGATTTTACCCAAAAG
AGGTAAGCTGCTGGACGCGCATGCGTATGGAATGAATGGTCTTGCTCGCG
GTAGTAGACAACAGCGTACTGACTGACTGCAGGAGGGTGCTCTATCATTC
CATCATTTCCGGAAAAATCTAGTTGCCGCGGTGGTGGTGTCTACACATAC
ATCTCTAGGGAGTATATAGTGAGGAGGTAATTCTCCAATAGGTCAAAGCC
TTCCTATTTTTGTGGCCACCACTGGTGACAGCCGTGGCTGCTACGGGAAA
ATTGGAGAGGTGAACAGCGTGGGGGGAGAGGAATATCATTTCAAGAGGGC
AAATCATCCAAGTGATCTCTCTTTTCCCTCAGGCTGACTAAATTTAATGA
CTCCCGGTGGCTGCGATTTGAGTGCTTAGAGCTCTAAGATATGTTAACCC
GATCCAACTTACTAGTTAGTGCCACACAGTAAAGAGAGAGGAAGAGAGTT
CCTGCCAATCTCCACGTCGACACATGGAGTATATGGCATATCTTTGGTCT
CGTGTTTCAAGACCGAGCTCCTATTTTATCATAGCTTGCGACCGGTTCTC
TCCGATTATTTGACATGGGTTCACGAAAAATGAATCGTGGCAACGCACAG
AATCCATCGTCATCATCATAATCGCTGTTGAAGATTTCAGCCGCACATGA
TTTGCCAATGTAGTTAGGGCCAGATGTATATGTGCTCTGCCCACCTCGAC
GATGTGTTTGGGTTTAATGTATGATTTCAATGTTGTGCCAACATGGCTTG
CTTTTATTGTAGTACGACTCGTAGAATACGTGAGTATGATATCAAGATCT
GGTCGATCTGAGCGCGATATCCGCGCGCGATATCCGAAACTAGCTGATTT
GTATGTATTGCAAAAACATGCTTGATTAGATTTTTCAAACCACACTCATC
ACTTGATTTCAGTGTGGTGGGAAAAAACGCTGGTTTTCAGTGTGCTTTCG
GGTAGCATAAACGATGAAGGTATCACCAGTGCCGGTAGTACGATGAGTGC
TGCTGATGGTACACATATCTCGTATGACATCCGTGACAAAATAATCATAG
TCCAATATACTACCATCGTTGTTGGTCTCCTTTGACTTACGACAATAAAA
CGGAGTACTGATAGGAGCAGAGCTACGACAACGCGGTTGTGAAGTCCATG
CTTTGTTCTTGACCCACGCACAGGAGGTCGCTGCGTTCGTAACGGGTACA
GACACCATATCCGTTGAAGGGATCTTCTACAGGAGGCCATTTTTTTGTCC
GACTCTTCCCATTTTTCCGTTTTCCTTAACTTGAAAATCGCGATAGTGAG
CTGAACAGATTGACGAAAGTGACCAAAGTGCACCCGATGAATAATGGCAA
CATGCTGTATAGTGTTTCCGCACATCTCTCTCAATTTTGAGCTCCCTATC
GTGATTGCCAATTTAGGAAAAGGAAAAAGGGATAAAATCAGACAAAAAAC
GGCTCCTTTAGAACGGGCATCAGATTCATTTTCAGAAGTTGCAATAAGGT
CAGACTTGGAAATGTTCTGGAACGATCTCAACCAGCTTGGCGTGTTAAGC
CTTCGGGAACGTCTGACCACGTAATCAGCTGTGGAGTGCTTCTGTATTAT
TTGGCCGTTACGGAAAAAGTCGATATTTGCCCCTTCTCATCCTACACTAA
ATCCAATACAGAAGTTGCCAAACGATAAAAAAGCTACCCCCCCCTTTGCA
CCCAAGTTTCACCAACCAGTTGTCCAGATCGAGGTAAGCATTCTGTCGAC
GTTTTGGTCGTTTTTACGACAAATCTGTATTTTGACCATTTCGAAGTTCG
GTATCTGAAGGGTATATATATTGTGGTTGTGTTGAATACCTTGTAAGAAA
GGGTATTCGGCACGAGTGTCTCTACAGGATGAGTAACGTTTTCACAGTGC
CGTCGACGATACGCGGGGCCTCCGACGACCACGGAATCACAAGGTGGTGA
GTTCGAAGACGGCCTGGAACAACGAAAAAGAGGACTTTGTGAATTTGACA
AATGCCGCAAACATGGTAAGGTCCCAGGAGCGAAACTTCTAACAGCTCGT
TTAAAATATGATGTGGAGGCGGGTCGCCCATACGCGAGGATAGGAGGAAG
TTGTGAACGATAAAGAGCGAAAGTCCTTACAGTGAAATCGGTCACCCCTC
GGAGGTCTCCTGCAAAAAGCAAGAAAAGGGTAATCGAGAGCTTGGTTATG
TGGAGAATATCGTACTACAGGAACGGGGGATTCCCGAAGGTGTCATTAGA
GGAACTCTTTTCACAGGATGAATATTTTCATTCCGATGAAACTCATTGTA
TTTGAACTCACTGGATAATGCTCAATCAGGCATGGCAAACACTACGATTG
TGTATGAGAGAGAACGGGACTATGAACCGGCAAAACAACGGCGCTAATCT
TGCAGGAATCGTCATCACTTGGCAGGCCACACATGTGGGATTTTGAATGA
AGGAGCAATTGTATATGCTAATCAAGTGTAAGAGGCTTTTTACCATGCCA
CAAATGGATGATGACCAAGTGGCGCATTAACGCTGAATTAACAATAGCCA
GCACCAACTAAAACGATCTGGCCATTTTAAGACATGGTGTTAAGTACGGC
CAACACTGTACTAAGACCAGTGCTGATTACTATGTGGTAGACGTTAATGC
TTTGCCTATTCACCAGCAATCACCAGTGTTCTGACGGCACGCACAGCCGT
CACCCGTCGCCGATCCTGAGCGAGGACTGGCGAACGTCACGGAGATCTCA
TGATTTCGGGAGGGCTCTGTGTGCTCTTCTTGGAAACCTTCGCATCTAAA
ACATGATCTTCGCATTAGTAGGCAAACATACACTACTACTACTACGTAAG
TAGTTTTTAGTGTGACAAAACATCAATCCCTATGTAAAATATCTCTTTTA
AGCTTTGTCATCGATGAACTCACCTAATTGTGAAGATTTTGGGAAGACTC
TCAATACAGACTGATCATATCGTAGCACCCGTAGCTTTAAGTAAAGTACC
AGCCCGACATGGGAGGGCAAATCTTGGGCACCCAATAGAGAAGGGCCTAT
GGTTTGAGTTTTCGTGTATGCGATGAGTCAATCTTGAAACAGACGCAGAA
CTCATTTGTCTCTCGCTTCTGCATCGTACCTTCTATGTATGCATGCGAAA
ATCGTTCTTGTCAACCATTGTTCAATGGGCCAGGTGGTTGGTACTAGGAG
GCGGATAGGAGAGGAAAACCCTCAGGAAGATACTCGTATCGCTCATATGC
TGAAACACGGTAAGGCTGACTGGCGACACTGATGATATTTACATAATGCA
TATTTGCTTGCATATGCATGTGCGCACGCATTTAGAACTGTCTGTTTTGT
CGTAACGTTTTTGGTTTTTGGCTCCATGTATGTTAATACATCACCTACCT
GTTTTGCATGATTTGTCCTCAAGCATGACGAATAGGGTTCGAGTTGGTGG
TATATACACACGTGGGGGTCAGCAATGTGTTCCAATTCAAATGAACATAT
TCCGTTGCCATGTTGGAGGAGCAGGTAGCGTACGTGATTCTTCGCTTTTC
CACCTCGTGGCCTTCAGATGGATCAGGCAGCGCACAGGCTGGGTCGATAT
GTGTTGTATTTGTTTTCCATGCCCCTTTTGTTTCTCTCCAAACTTTCGGG
CTACATGCCGTCACGCACATGCAATGACTTATTTGTCGCTTGAAAAACGA
CTAATTACGACCCCTTAATCCGGGTAGAAAACGAAGCCTCTCGTGTCACT
AGTTCTATCTATATATTACTCATTTAGATAGTATATAGGTATCATGTCCT
ACGTTGCAGTCGATCCCTTCTTCAGCTTGACCCCAATCAGGGATCGCCGT
CTCATCCGTCGTTTGAGACGACTAAGTAATCATGGGATGTGTGGGGTTTA
GAGGGCCCCGTATCGACGAATATGTAGCGTCGATTACGTTGGTATCACCC
CGATGCTTGATCTGGACCTGGTACATTCGTAAAGCGGGCGGGACGGCGGG
TCCGGAGAGCCGCGAGTTACATATGCCTTGGGAGATGCGATAGATGGATC
GCGTCACATCACTGTCTATGGGTTAAAACGTTGGCGTGTCTTGTTTCTAG
GTCTTCCATTGAGTTTCTGTGTGAAATGTCGTCACAGATTCAAACTTTGT
CCTCTGGGATCAATGTCTATATTTTCCCGCCTATTTCCTGCCCAAGTGTG
CGCACCGGGGTTTTGCTATTGTAGAGAACGAACGCACTGAATCAAAGTAC
CATCTTTATCGTGAACTTGCTCGTGGAAATATGGCATCATTATGGGGATT
AGGCAGAATTTATTCGGTAGAGCTAATTAGCTTGTACGTTCGTTGTGAGT
ACACTTGCGCTTTCGTTGGTAGGATTCCCTCTACGATCTCGTCATGGGCC
GTTCTAAACGACGAAGATTTTATCTGAGTGTTCCCATTTCCCCGTTTTCC
GAAAATCGCAAATCGCGGTAGCGAGCTCAAAATTGAGGGAAAGGTGCGGA
ATAACTGCACACCATGTTACCCTCATACGGCCTGATGCACTTTAGTCACA
GCCATCAACATGTTCAGCACGCTCTCGCGATTTCCGTTCTTCGGAAAAAC
GAAAATACGGAAAAAATCGGACGAAAAACGACCTCGTTTGTAACATGCCT
AATCCACTCTTGACGATTGTGTTCGCACCGTCCCCACTCCCAACTGGACG
AACGGCGCAGGCTATATCTATAAATCAAATGCTTGGTTATGGGCGGTGGT
TGTGCCCAGAAGCGCATCATTGGGTTATTCTTCTAGAAGGGAGAAACGCG
GGCTATATAAAGATGCTTTTACTACTGCTGCCCCGTCGAGCGGATCGCCC
AAGCGATTCTCCAAGAGAGCCAGAGCACCCTTCAAAGTTCAATTGGCTCT
ATTCCGCCATGAAAACTCGAATGTAAAGCGCAAGCTGCCTCTCCTAGCGA
TGGTGGTCTGTACGATGAGCAAGTGAGTGAAAGAGCCCGGGGGGGGAACA
ACTGGCTTGCTTCATGCCTGAGGTACCAGCAGTGCTCAATCATCCTTCTG
GGGCTGTAGGACGCCATGGATTGATTTTGCAGTATATTTGCAAAGTATAT
ATGCGATTTAGTATTTGATTCGAGTGCATCGTCACGAGATATGCTGGGGT
TATTTTGGCCGGCATGAGGTCGGTTCCAACTGGACTCAGTGTGGCTTTTA
GTGGATTGATTCTCTATGAAGTGGCGGTCTACGATGATTCTGTCCGGTAC
GGGATCACATGACCGAATAGGGTCAGGTAGCGCATATGCCGTTCAGTTGT
TGGGGCGTAGTTTCCGGAGCACAGGGCATGGTCACTGGTGTCCTTGTAAA
ACCCTCTCTACTCCAGCTTCTGCCGATATGTAGGTGCAACGCCTTCCAGA
AAGGCGGTATGAGTTCAAAGACTCGATATTTCTGTTGTAGTTGCCTTTGG
GCTATGCGTAGAAGGAGGCGCTCCACCCCGGTATGACCAAATTCAGTTGA
ATTGGTGTATATATAAAGCAGTGATCGTTGTGTGTAGCGTGCTCAACGTG
AGACACCTTGCCGCCGTAGAGGTTCACCTGGTGCAAAATCCTGCAAGGTG
GTATTTAGGGCACAGCTATTGGGAGCGCTCACCATAAATTCTTATGGATA
TATCAGTGTTCAGCTCGTAATCGTCATCGCGCAAGGGTCTACACGAATGA
ACAAGACGCGACATCAGCTCCAGATATGAGGTTAAGGACTCCAAGTGCAC
AAATGCTGCAACACACCTGTCAATACCTGGATATTGCGCGCATTCAGCTG
ATGGCAGTTCCCCAAGGGCACTCTGTGAACACCTCTCGTTAACTGTGAAT
CTGAACCGAGTCGACACTGCCTGGTTTCTCATTCATGTCGATAGTGGTAC
TTGTCAAGACTACAGTAGGAGATAAATGCAACGTCCGCCCGAGTGTTGTA
TCCGATGTTTGAAGAGGATTTTACTTGTTGGAGTCGGATCTGCGTTCACC
ACACTCGATGCTTCAATGGGAGATAATGTGTGGTTGTCAGGCGCCGTGAC
GTGCTCATTACTAACAGCACATCCGACTGCTAATTGCACACGAGTACGAC
GAGGTGTTTTCCAGCAATGGCCGCGCAAGGTATGAAGACGATCGTTTATC
GTAAATGATCATTCGTCGCTCCCTACTCGAACTACAAAAAGAGTGCTAAG
GTACCATGGATCCTGATGATATATTTTGGCGGGATGTGAGCAATTTTACA
ACATTCCCCCATGCCTCCCTTTCCATCTGTATCCGCTCTCCTGCCATTGA
ACACCCCTCGGGGTTGTTCGTTAGGTATGCTTCGAAGTCGTGAGCGTTGA
GGCGAGAAGTGCGATGTATAGACGACGCTGCGATCCGCCTCCTATTTGTG
ACGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig350:31270..37824-

>mRNA_H-paniculata_contig350.9318.1 ID=mRNA_H-paniculata_contig350.9318.1|Name=mRNA_H-paniculata_contig350.9318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig350:31270..37824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTCGAAGCTGGAGCAGACGAAAATATTTTGAATGGTGCTGGATT
TTACCCAAAAGAGATGTTGCTCGAAGCTGGAGCAGACGAAAATATTTTGA
ATGGTGCTGGATTTTACCCAAAAGAGGTGGTTGGTACTAGGAGGCGGATA
GGAGAGGAAAACCCTCAGGAAGATACTCGTATCGCTCATATGCTGAAACA
CGGTGGTTGGTACTAGGAGGCGGATAGGAGAGGAAAACCCTCAGGAAGAT
ACTCGTATCGCTCATATGCTGAAACACGGCTATATCTATAAATCAAATGC
TTGGTTATGGGCGGTGGTTGTGCCCAGAAGCGCATCATTGGGTTATTCTT
CTAGAAGGGAGAAACGCGGGCTATATAAAGATGCTTTTACTACTGCTGCC
CCGTCGAGCGGATCGCCCAAGCGATTCTCCAAGAGAGCCAGAGCACCCTT
CAAAGTTCAATTGGCTCTATTCCGCCATGAAAACTCGAATGTAAAGCGCA
AGCTGCCTCTCCTAGCGATGGTGGTCTGTACGATGAGCAAGCTATATCTA
TAAATCAAATGCTTGGTTATGGGCGGTGGTTGTGCCCAGAAGCGCATCAT
TGGGTTATTCTTCTAGAAGGGAGAAACGCGGGCTATATAAAGATGCTTTT
ACTACTGCTGCCCCGTCGAGCGGATCGCCCAAGCGATTCTCCAAGAGAGC
CAGAGCACCCTTCAAAGTTCAATTGGCTCTATTCCGCCATGAAAACTCGA
ATGTAAAGCGCAAGCTGCCTCTCCTAGCGATGGTGGTCTGTACGATGAGC
AAGTATGCTTCGAAGTCGTGAGTATGCTTCGAAGTCGTGA
back to top